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Title: Recent Advances in Understanding the Role of Genomic and Epigenomic Factors in Noncommunicable Diseases

Journal Article · · BioMed Research International
DOI:https://doi.org/10.1155/2019/1649873· OSTI ID:1560578

The NGS based whole genome and exome sequencing endeavors have identified a plethora of mutations in the coding regions of the human genome that are held responsible as the causative factors for various human noncommunicable diseases including cancer. These mutations encompass various nonsynonymous nucleotide substitutions causing missense, nonsense, and frameshift changes in the protein-coding genes. For these types of mutations it is easier to establish a causal link between these mutations and disease phenotypes as they tend to change the amino acids in the proteins resulting in their loss-of-function (of tumor suppressor genes) or gain-of-function (of oncogenes) which might be directly responsible for the disease such as cancer. Apart from these disease-causing mutations, vast majority (more than 80%) of single-nucleotide polymorphisms were distributed throughout the human genome, mostly in the noncoding regions such as introns and intergenic regions. Large body of evidence suggested that variants in the noncoding regions can be considered as genetic predisposition to many noncommunicable diseases including cancer.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1560578
Journal Information:
BioMed Research International, Vol. 2019; ISSN 2314-6133
Publisher:
HindawiCopyright Statement
Country of Publication:
United States
Language:
English

References (6)

A systematic review of cancer GWAS and candidate gene meta-analyses reveals limited overlap but similar effect sizes journal July 2013
Finding the missing heritability of complex diseases journal October 2009
Risk SNP-Mediated Promoter-Enhancer Switching Drives Prostate Cancer through lncRNA PCAT19 journal July 2018
Non-coding genetic variants in human disease: Figure 1. journal July 2015
Genome-wide association studies of cancer: current insights and future perspectives journal October 2017
Current challenges in understanding the role of enhancers in disease journal December 2022

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