Bead-Tracking Toolbox for MATLAB

Software · Mon May 20 00:00:00 EDT 2019

DOI:https://doi.org/10.11578/dc.20201125.6· OSTI ID:1546760 · Code ID:48760

Rose, Derek C. ^[1]; Eicholtz, Matthew R. ^[2]

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1. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
2. Florida Southern College, Lakeland, FL (United States)

A collection of MATLAB scripts forming a toolbox for video (frame by frame) detection and tracking of beads imaged with fluorescence microscope for estimating bead flow and location tracks. Scripts accept tiff image stacks of video frames and provide bead locations and tracked positions over frames in stack. Various utility functions are also provided to assist in data I/O. A custom solution for specific data source - specifically, the software works well for noisy/out of focus florescence microscopy images.

• Project Type: Open Source, Publicly Available Repository
• Site Accession Number: 8083
• Software Type: Scientific
• License(s): BSD 3-clause "New" or "Revised" License
• Programming Language(s): MATLAB/2018a
• Research Organization: Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
• Sponsoring Organization: USDOE

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  Primary Award/Contract Number:

  AC05-00OR22725
• DOE Contract Number: AC05-00OR22725
• Code ID: 48760
• OSTI ID: 1546760
• Country of Origin: United States