Temporal Dynamics of the Human Vaginal Microbiota
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journal
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May 2012 |
Comparative Genomics of Gardnerella vaginalis Strains Reveals Substantial Differences in Metabolic and Virulence Potential
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August 2010 |
An updated evolutionary classification of CRISPR–Cas systems
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September 2015 |
UCHIME improves sensitivity and speed of chimera detection
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June 2011 |
Intervening Sequences of Regularly Spaced Prokaryotic Repeats Derive from Foreign Genetic Elements
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February 2005 |
Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy
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August 2012 |
Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women
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August 2017 |
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
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April 2012 |
UniProt: the universal protein knowledgebase
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November 2016 |
Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis
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January 2014 |
Gardnerella vaginalis Subgroups Defined by cpn60 Sequencing and Sialidase Activity in Isolates from Canada, Belgium and Kenya
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January 2016 |
Ecological Role of Lactobacilli in the Gastrointestinal Tract: Implications for Fundamental and Biomedical Research
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June 2008 |
Role of Gardnerella vaginalis in the Pathogenesis of Bacterial Vaginosis: A Conceptual Model
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February 2014 |
Changes in vaginal community state types reflect major shifts in the microbiome
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January 2017 |
KAAS: an automatic genome annotation and pathway reconstruction server
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May 2007 |
Homeostasis and Inflammation in the Intestine
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March 2010 |
The composition and stability of the vaginal microbiota of normal pregnant women is different from that of non-pregnant women
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February 2014 |
Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems
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February 2016 |
Fast and accurate short read alignment with Burrows-Wheeler transform
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May 2009 |
The vaginal microbiome during pregnancy and the postpartum period in a European population
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March 2015 |
KEGG: Kyoto Encyclopedia of Genes and Genomes
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January 2000 |
At the crossroads of vaginal health and disease, the genome sequence of Lactobacillus iners AB-1
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November 2010 |
The Application of Ecological Theory Toward an Understanding of the Human Microbiome
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June 2012 |
Community-wide analysis of microbial genome sequence signatures
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January 2009 |
Lactobacillus rhamnosus L60, a potential probiotic isolated from the human vagina
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January 2008 |
Diverse CRISPRs Evolving in Human Microbiomes
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June 2012 |
Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time
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December 2010 |
EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
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May 2011 |
Genomes of Gardnerella Strains Reveal an Abundance of Prophages within the Bladder Microbiome
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November 2016 |
Early pregnancy vaginal microbiome trends and preterm birth
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September 2017 |
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
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March 1997 |
Association between Bacterial Vaginosis and Preterm Delivery of a Low-Birth-Weight Infant
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December 1995 |
Prodigal: prokaryotic gene recognition and translation initiation site identification
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March 2010 |
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
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February 2010 |
Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women
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May 2007 |
DECIPHER, a Search-Based Approach to Chimera Identification for 16S rRNA Sequences
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November 2011 |
Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems
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November 2015 |
The vaginal microbiota, host defence and reproductive physiology: Vaginal microbiota in defence and physiology
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May 2016 |
Search and clustering orders of magnitude faster than BLAST
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August 2010 |
Virus Population Dynamics and Acquired Virus Resistance in Natural Microbial Communities
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May 2008 |
kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome: Table 1
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April 2015 |
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
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February 2012 |
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
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April 2013 |
Vaginal microbiome in early pregnancy and subsequent risk of spontaneous preterm birth: a case-control study
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June 2018 |
Diversity of the Vaginal Microbiome Correlates With Preterm Birth
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May 2013 |
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
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June 2010 |
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
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April 2012 |
Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome
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June 2012 |
Vaginal microbiome of reproductive-age women
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June 2010 |
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
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November 2007 |
Unusual biology across a group comprising more than 15% of domain Bacteria
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June 2015 |
Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates
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January 2017 |
Vaginal Microbiome: Rethinking Health and Disease
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October 2012 |
Understanding vaginal microbiome complexity from an ecological perspective
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October 2012 |
Role of the gut microbiota in defining human health
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April 2010 |
CRISPR/Cas, the Immune System of Bacteria and Archaea
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journal
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January 2010 |
Fast gapped-read alignment with Bowtie 2
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March 2012 |
A new view of the tree of life
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April 2016 |
Enterobactin: An archetype for microbial iron transport
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March 2003 |
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
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November 2014 |
The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk
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January 2017 |
The CRISPR System: Small RNA-Guided Defense in Bacteria and Archaea
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January 2010 |
Gardnerella vaginalis comprises three distinct genotypes of which only two produce sialidase
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May 2011 |
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
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April 2004 |
MUSCLE: multiple sequence alignment with high accuracy and high throughput
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March 2004 |
bioDBnet: the biological database network
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January 2009 |
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
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April 2009 |
Temporal and spatial variation of the human microbiota during pregnancy
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August 2015 |
A microbial perspective of human developmental biology
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July 2016 |
Metagenomic reconstructions of bacterial CRISPR loci constrain population histories
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September 2015 |
Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions
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April 2013 |
The human microbiome: at the interface of health and disease
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March 2012 |
Crass: identification and reconstruction of CRISPR from unassembled metagenomic data
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March 2013 |
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
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December 2014 |
Human oral viruses are personal, persistent and gender-consistent
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March 2014 |
Association between living environment and human oral viral ecology
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April 2013 |
Microbial Changes during Pregnancy, Birth, and Infancy
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July 2016 |
The association between vaginal microbiota and female infertility: a systematic review and meta-analysis
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July 2020 |
Coriander Genomics Database: a genomic, transcriptomic, and metabolic database for coriander
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April 2020 |
Microbial community structure and functional properties in permanently and seasonally flooded areas in Poyang Lake
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March 2020 |
The Sequence Alignment/Map format and SAMtools
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June 2009 |
UniProt: the Universal Protein knowledgebase
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January 2004 |
Fine-scale population structure and evidence for local adaptation in Australian giant black tiger shrimp (Penaeus monodon) using SNP analysis
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September 2020 |
Datura genome reveals duplications of psychoactive alkaloid biosynthetic genes and high mutation rate following tissue culture
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March 2021 |
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
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May 2015 |
Comparative genomic analyses of 17 clinical isolates of Gardnerella vaginalis provide evidence of multiple genetically isolated clades consistent with subspeciation into genovars.
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text
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January 2012 |
BLAST+: architecture and applications
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journal
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January 2009 |
"Association between Bacterial Vaginosis and Preterm Delivery of a Low- birth-weight Infant."
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January 1996 |
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
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journal
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March 1997 |
Comparative genomic analyses of 17 clinical isolates of Gardnerella vaginalis provide evidence of multiple genetically isolated clades consistent with subspeciation into genovars.
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text
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January 2012 |
UniProt: the universal protein knowledgebase
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journal
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February 2018 |