Metals and Methanotrophy

Semrau, Jeremy D.; DiSpirito, Alan A.; Gu, Wenyu; Yoon, Sukhwan; Cann, Isaac

doi:10.1128/aem.02289-17

Title: Metals and Methanotrophy

Journal Article · Fri Jan 05 00:00:00 EST 2018 · Applied and Environmental Microbiology

DOI:https://doi.org/10.1128/aem.02289-17· OSTI ID:1503609

Semrau, Jeremy D. ^[1]; DiSpirito, Alan A. ^[2]; Gu, Wenyu ^[1]; Yoon, Sukhwan ^[3]; Cann, Isaac ^[4]

Univ. of Michigan, Ann Arbor, MI (United States)
Iowa State Univ., Ames, IA (United States)
Korea Advanced Inst. Science and Technology (KAIST), Daejeon (South Korea)
Univ. of Illinois, Urbana-Champaign, IL (United States)

ABSTRACTAerobic methanotrophs have long been known to play a critical role in the global carbon cycle, being capable of converting methane to biomass and carbon dioxide. Interestingly, these microbes exhibit great sensitivity to copper and rare-earth elements, with the expression of key genes involved in the central pathway of methane oxidation controlled by the availability of these metals. That is, these microbes have a “copper switch” that controls the expression of alternative methane monooxygenases and a “rare-earth element switch” that controls the expression of alternative methanol dehydrogenases. Further, it has been recently shown that some methanotrophs can detoxify inorganic mercury and demethylate methylmercury; this finding is remarkable, as the canonical organomercurial lyase does not exist in these methanotrophs, indicating that a novel mechanism is involved in methylmercury demethylation. Here, we review recent findings on methanotrophic interactions with metals, with a particular focus on these metal switches and the mechanisms used by methanotrophs to bind and sequester metals.

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Research Organization:: Univ. of Michigan, Ann Arbor, MI (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF)

Grant/Contract Number:: SC0018059

OSTI ID:: 1503609

Alternate ID(s):: OSTI ID: 1691494

Journal Information:: Applied and Environmental Microbiology, Vol. 84, Issue 6; ISSN 0099-2240

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 89 works

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References (168)

A methanotroph-based biorefinery: Potential scenarios for generating multiple products from a single fermentation Strong, P. J.; Kalyuzhnaya, M.; Silverman, J. Bioresource Technology, Vol. 215 https://doi.org/10.1016/j.biortech.2016.04.099	journal	September 2016
Fenton-like copper redox chemistry revisited: Hydrogen peroxide and superoxide mediation of copper-catalyzed oxidant production Pham, A. Ninh; Xing, Guowei; Miller, Christopher J. Journal of Catalysis, Vol. 301 https://doi.org/10.1016/j.jcat.2013.01.025	journal	May 2013
One millimetre makes the difference: high-resolution analysis of methane-oxidizing bacteria and their specific activity at the oxic–anoxic interface in a flooded paddy soil Reim, Andreas; Lüke, Claudia; Krause, Sascha The ISME Journal, Vol. 6, Issue 11 https://doi.org/10.1038/ismej.2012.57	journal	June 2012
Methanotrophs and copper Semrau, Jeremy D.; DiSpirito, Alan A.; Yoon, Sukhwan FEMS Microbiology Reviews, Vol. 34, Issue 4 https://doi.org/10.1111/j.1574-6976.2010.00212.x	journal	July 2010
The Biochemistry of Methane Oxidation Hakemian, Amanda S.; Rosenzweig, Amy C. Annual Review of Biochemistry, Vol. 76, Issue 1 https://doi.org/10.1146/annurev.biochem.76.061505.175355	journal	June 2007
An Oxidized Tryptophan Facilitates Copper Binding in Methylococcus capsulatus -secreted Protein MopE Helland, Ronny; Fjellbirkeland, Anne; Karlsen, Odd Andre Journal of Biological Chemistry, Vol. 283, Issue 20 https://doi.org/10.1074/jbc.M800340200	journal	March 2008
Mixed Pollutant Degradation by Methylosinus trichosporium OB3b Expressing either Soluble or Particulate Methane Monooxygenase: Can the Tortoise Beat the Hare? Lee, S. -W.; Keeney, D. R.; Lim, D. -H. Applied and Environmental Microbiology, Vol. 72, Issue 12 https://doi.org/10.1128/AEM.01604-06	journal	September 2006
The soluble methane mono-oxygenase of Methylococcus capsulatus (Bath). Its ability to oxygenate n-alkanes, n-alkenes, ethers, and alicyclic, aromatic and heterocyclic compounds Colby, J.; Stirling, D. I.; Dalton, H. Biochemical Journal, Vol. 165, Issue 2 https://doi.org/10.1042/bj1650395	journal	August 1977
The Metal Centers of Particulate Methane Monooxygenase from Methylosinus trichosporium OB3b ^† ^‡ Hakemian, Amanda S.; Kondapalli, Kalyan C.; Telser, Joshua Biochemistry, Vol. 47, Issue 26 https://doi.org/10.1021/bi800598h	journal	July 2008
Mutagenesis of the "Leucine Gate" To Explore the Basis of Catalytic Versatility in Soluble Methane Monooxygenase Borodina, E.; Nichol, T.; Dumont, M. G. Applied and Environmental Microbiology, Vol. 73, Issue 20 https://doi.org/10.1128/AEM.00823-07	journal	August 2007
Measurement and modeling of multiple substrate oxidation by methanotrophs at 20°C Yoon, Sukhwan; Semrau, Jeremy D. FEMS Microbiology Letters, Vol. 287, Issue 2, p. 156-162 https://doi.org/10.1111/j.1574-6968.2008.01314.x	journal	October 2008
Enrichment, Isolation and Some Properties of Methane-utilizing Bacteria Whittenbury, R.; Phillips, K. C.; Wilkinson, J. F. Journal of General Microbiology, Vol. 61, Issue 2 https://doi.org/10.1099/00221287-61-2-205	journal	May 1970
The structure and mechanism of methanol dehydrogenase Anthony, Christopher; Williams, Paul Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1647, Issue 1-2 https://doi.org/10.1016/S1570-9639(03)00042-6	journal	April 2003
Biochemistry of the Soluble Methane Monooxygenase Lipscomb, J. D. Annual Review of Microbiology, Vol. 48, Issue 1 https://doi.org/10.1146/annurev.mi.48.100194.002103	journal	October 1994
Quantitative Transcriptomics Reveals the Growth- and Nutrient-Dependent Response of a Streamlined Marine Methylotroph to Methanol and Naturally Occurring Dissolved Organic Matter Gifford, Scott M.; Becker, Jamie W.; Sosa, Oscar A. mBio, Vol. 7, Issue 6 https://doi.org/10.1128/mBio.01279-16	journal	November 2016
Isolation, sequencing, and mutagenesis of the gene encoding cytochrome c553i of Paracoccus denitrificans and characterization of the mutant strain. Ras, J.; Reijnders, W. N.; Van Spanning, R. J. Journal of Bacteriology, Vol. 173, Issue 21 https://doi.org/10.1128/jb.173.21.6971-6979.1991	journal	November 1991
Autotrophic Methanotrophy in Verrucomicrobia: Methylacidiphilum fumariolicumSolV Uses the Calvin-Benson-Bassham Cycle for Carbon Dioxide Fixation Khadem, A. F.; Pol, A.; Wieczorek, A. Journal of Bacteriology, Vol. 193, Issue 17 https://doi.org/10.1128/JB.00407-11	journal	July 2011
Acetylene as a suicide substrate and active site probe for methane monooxygenase from Methylococcus capsulatus (Bath) Prior, S. D.; Dalton, H. FEMS Microbiology Letters, Vol. 29, Issue 1-2 https://doi.org/10.1111/j.1574-6968.1985.tb00843.x	journal	August 1985
Copper-Binding Properties and Structures of Methanobactins from Methylosinus trichosporium OB3b El Ghazouani, Abdelnasser; Baslé, Arnaud; Firbank, Susan J. Inorganic Chemistry, Vol. 50, Issue 4 https://doi.org/10.1021/ic101965j	journal	February 2011
Spectral, Kinetic, and Thermodynamic Properties of Cu(I) and Cu(II) Binding by Methanobactin from Methylosinus trichosporium OB3b ^† Choi, Dong W.; Zea, Corbin J.; Do, Young S. Biochemistry, Vol. 45, Issue 5 https://doi.org/10.1021/bi051815t	journal	February 2006
Characterization of a Novel Methanol Dehydrogenase in Representatives of Burkholderiales: Implications for Environmental Detection of Methylotrophy and Evidence for Convergent Evolution Kalyuzhnaya, M. G.; Hristova, K. R.; Lidstrom, M. E. Journal of Bacteriology, Vol. 190, Issue 11 https://doi.org/10.1128/JB.00180-08	journal	April 2008
Genome mining for methanobactins Kenney, Grace E.; Rosenzweig, Amy C. BMC Biology, Vol. 11, Issue 1 https://doi.org/10.1186/1741-7007-11-17	journal	February 2013
Methanobactin, a Copper-Acquisition Compound from Methane-Oxidizing Bacteria Kim, H. J. Science, Vol. 305, Issue 5690 https://doi.org/10.1126/science.1098322	journal	September 2004
Chemical Plausibility of Cu(III) with Biological Ligation in pMMO Citek, Cooper; Gary, J. Brannon; Wasinger, Erik C. Journal of the American Chemical Society, Vol. 137, Issue 22 https://doi.org/10.1021/jacs.5b02157	journal	May 2015
The Phyre2 web portal for protein modeling, prediction and analysis Kelley, Lawrence A.; Mezulis, Stefans; Yates, Christopher M. Nature Protocols, Vol. 10, Issue 6 https://doi.org/10.1038/nprot.2015.053	journal	May 2015
Expression of the PitA phosphate/metal transporter of Escherichia coli is responsive to zinc and inorganic phosphate levels Jackson, Rachel J.; Binet, Marie R. B.; Lee, Lucy J. FEMS Microbiology Letters, Vol. 289, Issue 2 https://doi.org/10.1111/j.1574-6968.2008.01386.x	journal	December 2008
The role of copper in the pMMO of Methylococcus capsulatus Bath: A structural vs. catalytic function Semrau, Jeremy D.; Zolandz, Dorothy; Lindstrom, Mary E. Journal of Inorganic Biochemistry, Vol. 58, Issue 4 https://doi.org/10.1016/0162-0134(94)00056-G	journal	June 1995
Nucleotide metabolism and its control in lactic acid bacteria Kilstrup, Mogens; Hammer, Karin; Ruhdal Jensen, Peter FEMS Microbiology Reviews, Vol. 29, Issue 3 https://doi.org/10.1016/j.fmrre.2005.04.006	journal	August 2005
Modularity of methylotrophy, revisited: Modularity of methylotrophy, revisited Chistoserdova, Ludmila Environmental Microbiology, Vol. 13, Issue 10 https://doi.org/10.1111/j.1462-2920.2011.02464.x	journal	March 2011
Methanotrophs and methylobacteria are found in woody plant tissues within the winter period Doronina, N. V.; Ivanova, E. G.; Suzina, N. E. Microbiology, Vol. 73, Issue 6 https://doi.org/10.1007/s11021-005-0012-0	journal	November 2004
Draft Genome Sequence of Methyloferula stellata AR4, an Obligate Methanotroph Possessing Only a Soluble Methane Monooxygenase Dedysh, Svetlana N.; Naumoff, Daniil G.; Vorobev, Alexey V. Genome Announcements, Vol. 3, Issue 2 https://doi.org/10.1128/genomeA.01555-14	journal	March 2015
Growth of methanotrophs in methane and oxygen counter gradients Amaral, John A.; Knowles, Roger FEMS Microbiology Letters, Vol. 126, Issue 3 https://doi.org/10.1111/j.1574-6968.1995.tb07421.x	journal	March 1995
A Catalytic Role of XoxF1 as La3+-Dependent Methanol Dehydrogenase in Methylobacterium extorquens Strain AM1 Nakagawa, Tomoyuki; Mitsui, Ryoji; Tani, Akio PLoS ONE, Vol. 7, Issue 11 https://doi.org/10.1371/journal.pone.0050480	journal	November 2012
Molecular structure of La3+-induced methanol dehydrogenase-like protein in Methylobacterium radiotolerans Hibi, Yoshihisa; Asai, Kentaro; Arafuka, Hiroshi Journal of Bioscience and Bioengineering, Vol. 111, Issue 5 https://doi.org/10.1016/j.jbiosc.2010.12.017	journal	May 2011
Culturable Facultative Methylotrophic Bacteria from the Cactus <i>Neobuxbaumia macrocephala</i> Possess the Locus <i>xoxF</i> and Consume Methanol in the Presence of Ce<sup>3+</sup> and Ca<sup>2+</sup> del Rocío Bustillos-Cristales, María; Corona-Gutierrez, Ivan; Castañeda-Lucio, Miguel Microbes and environments, Vol. 32, Issue 3 https://doi.org/10.1264/jsme2.ME17070	journal	January 2017
Investigation of XoxF methanol dehydrogenases reveals new methylotrophic bacteria in pelagic marine and freshwater ecosystems Ramachandran, Arthi; Walsh, David A. FEMS Microbiology Ecology, Vol. 91, Issue 10 https://doi.org/10.1093/femsec/fiv105	journal	August 2015
Aquatic plant surface as a niche for methanotrophs Yoshida, Naoko; Iguchi, Hiroyuki; Yurimoto, Hiroya Frontiers in Microbiology, Vol. 5 https://doi.org/10.3389/fmicb.2014.00030	journal	January 2014
Purification and Physical−Chemical Properties of Methanobactin: A Chalkophore from Methylosinus trichosporium OB3b ^† Kim, Hyung J.; Galeva, Nadezhda; Larive, Cynthia K. Biochemistry, Vol. 44, Issue 13 https://doi.org/10.1021/bi047367r	journal	April 2005
Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker Knief, Claudia Frontiers in Microbiology, Vol. 6 https://doi.org/10.3389/fmicb.2015.01346	journal	December 2015
The small genome of an abundant coastal ocean methylotroph Giovannoni, Stephen J.; Hayakawa, Darin H.; Tripp, H. James Environmental Microbiology, Vol. 10, Issue 7 https://doi.org/10.1111/j.1462-2920.2008.01598.x	journal	July 2008
Spectral and copper binding properties of methanobactin from the facultative methanotroph Methylocystis strain SB2 Bandow, Nathan; Gilles, Valerie S.; Freesmeier, Brittani Journal of Inorganic Biochemistry, Vol. 110 https://doi.org/10.1016/j.jinorgbio.2012.02.002	journal	May 2012
Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia Dunfield, Peter F.; Yuryev, Anton; Senin, Pavel Nature, Vol. 450, Issue 7171 https://doi.org/10.1038/nature06411	journal	November 2007
Rare earth metals are essential for methanotrophic life in volcanic mudpots: Rare earth metals essential for methanotrophic life Pol, Arjan; Barends, Thomas R. M.; Dietl, Andreas Environmental Microbiology, Vol. 16, Issue 1 https://doi.org/10.1111/1462-2920.12249	journal	September 2013
Sulfur oxidizers dominate carbon fixation at a biogeochemical hot spot in the dark ocean Mattes, Timothy E.; Nunn, Brook L.; Marshall, Katharine T. The ISME Journal, Vol. 7, Issue 12 https://doi.org/10.1038/ismej.2013.113	journal	July 2013
Genome Characteristics of Two Novel Type I Methanotrophs Enriched from North Sea Sediments Containing Exclusively a Lanthanide-Dependent XoxF5-Type Methanol Dehydrogenase Vekeman, Bram; Speth, Daan; Wille, Jasper Microbial Ecology, Vol. 72, Issue 3 https://doi.org/10.1007/s00248-016-0808-7	journal	July 2016
Psychrophilic methanotroph from tundra soil Omelchenko, Marina V.; Vasilyeva, Leana V.; Zavarzin, G. A. Current Microbiology, Vol. 27, Issue 5 https://doi.org/10.1007/BF01575988	journal	November 1993
Siderophore−Manganese(III) Interactions II. Manganite Dissolution Promoted by Desferrioxamine B Duckworth, Owen W.; Sposito, Garrison Environmental Science & Technology, Vol. 39, Issue 16 https://doi.org/10.1021/es050276c	journal	August 2005
Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph: Metagenomics, metaproteomics and methylotrophy Grob, Carolina; Taubert, Martin; Howat, Alexandra M. Environmental Microbiology, Vol. 17, Issue 10 https://doi.org/10.1111/1462-2920.12935	journal	July 2015
Bacterial cytosolic proteins with a high capacity for Cu(I) that protect against copper toxicity Vita, Nicolas; Landolfi, Gianpiero; Baslé, Arnaud Scientific Reports, Vol. 6, Issue 1 https://doi.org/10.1038/srep39065	journal	December 2016
A TonB-Dependent Transporter Is Responsible for Methanobactin Uptake by Methylosinus trichosporium OB3b Gu, Wenyu; Farhan Ul Haque, Muhammad; Baral, Bipin S. Applied and Environmental Microbiology, Vol. 82, Issue 6 https://doi.org/10.1128/AEM.03884-15	journal	January 2016
The structure and function of the PQQ-containing quinoprotein dehydrogenases Anthony, Christopher; Ghosh, Minakshi Progress in Biophysics and Molecular Biology, Vol. 69, Issue 1 https://doi.org/10.1016/S0079-6107(97)00020-5	journal	January 1998
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes Pruesse, Elmar; Peplies, Jörg; Glöckner, Frank Oliver Bioinformatics, Vol. 28, Issue 14 https://doi.org/10.1093/bioinformatics/bts252	journal	May 2012
Characterization of Methanobactin from Methylosinus sp. LW4 Kenney, Grace E.; Goering, Anthony W.; Ross, Matthew O. Journal of the American Chemical Society, Vol. 138, Issue 35 https://doi.org/10.1021/jacs.6b06821	journal	August 2016
An Aminotransferase is Responsible for the Deamination of the N-terminal Leucine and Required for Formation of Oxazolone Ring A in Methanobactin of Methylosinus trichosporium OB3b Gu, Wenyu; Baral, Bipin S.; DiSpirito, Alan A. Applied and Environmental Microbiology https://doi.org/10.1128/AEM.02619-16	journal	October 2016
Evidence for a Tryptophan Tryptophylquinone Aminosemiquinone Intermediate in the Physiologic Reaction between Methylamine Dehydrogenase and Amicyanin ^† Bishop, G. Reid; Brooks, Harold B.; Davidson, Victor L. Biochemistry, Vol. 35, Issue 27 https://doi.org/10.1021/bi960404x	journal	January 1996
The iron-sulfur clusters of dehydratases are primary intracellular targets of copper toxicity Macomber, L.; Imlay, J. A. Proceedings of the National Academy of Sciences, Vol. 106, Issue 20 https://doi.org/10.1073/pnas.0812808106	journal	May 2009
Membrane-associated methane monooxygenase from Methylococcus capsulatus (Bath). Zahn, J. A.; DiSpirito, A. A. Journal of Bacteriology, Vol. 178, Issue 4 https://doi.org/10.1128/jb.178.4.1018-1029.1996	journal	February 1996
Lanthanide-binding peptides and the enzymes that Might Have Been Lim, S.; Franklin, S. J. Cellular and Molecular Life Sciences, Vol. 61, Issue 17 https://doi.org/10.1007/s00018-004-4156-2	journal	August 2004
Mercury binding by methanobactin from Methylocystis strain SB2 Baral, Bipin S.; Bandow, Nathan L.; Vorobev, Alexy Journal of Inorganic Biochemistry, Vol. 141 https://doi.org/10.1016/j.jinorgbio.2014.09.004	journal	December 2014
Light rare earth element depletion during Deepwater Horizon blowout methanotrophy Shiller, A. M.; Chan, E. W.; Joung, D. J. Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/s41598-017-11060-z	journal	September 2017
Methane as a Resource: Can the Methanotrophs Add Value? Strong, P. J.; Xie, S.; Clarke, W. P. Environmental Science & Technology, Vol. 49, Issue 7 https://doi.org/10.1021/es504242n	journal	March 2015
Draft Genome Sequence of Methylocapsa palsarum NE2 ^T , an Obligate Methanotroph from Subarctic Soil Miroshnikov, Kirill K.; Didriksen, Alena; Naumoff, Daniil G. Genome Announcements, Vol. 5, Issue 24 https://doi.org/10.1128/genomeA.00504-17	journal	June 2017
Variations in methanobactin structure influences copper utilization by methane-oxidizing bacteria El Ghazouani, A.; Basle, A.; Gray, J. Proceedings of the National Academy of Sciences, Vol. 109, Issue 22 https://doi.org/10.1073/pnas.1112921109	journal	May 2012
Lanthanide-dependent cross-feeding of methane-derived carbon is linked by microbial community interactions Krause, Sascha M. B.; Johnson, Timothy; Samadhi Karunaratne, Yasodara Proceedings of the National Academy of Sciences, Vol. 114, Issue 2 https://doi.org/10.1073/pnas.1619871114	journal	December 2016
Nitrite-driven anaerobic methane oxidation by oxygenic bacteria Ettwig, Katharina F.; Butler, Margaret K.; Le Paslier, Denis Nature, Vol. 464, Issue 7288 https://doi.org/10.1038/nature08883	journal	March 2010
The Membrane-Associated Methane Monooxygenase (pMMO) and pMMO-NADH:Quinone Oxidoreductase Complex from Methylococcus capsulatus Bath Choi, Dong-W.; Kunz, Ryan C.; Boyd, Eric S. Journal of Bacteriology, Vol. 185, Issue 19 https://doi.org/10.1128/JB.185.19.5755-5764.2003	journal	September 2003
Methanotrophy below pH 1 by a new Verrucomicrobia species Pol, Arjan; Heijmans, Klaas; Harhangi, Harry R. Nature, Vol. 450, Issue 7171 https://doi.org/10.1038/nature06222	journal	November 2007
XoxF encoding an alternative methanol dehydrogenase is widespread in coastal marine environments Taubert, Martin; Grob, Carolina; Howat, Alexandra M. Environmental Microbiology, Vol. 17, Issue 10 https://doi.org/10.1111/1462-2920.12896	journal	June 2015
The genomic landscape of the verrucomicrobial methanotroph Methylacidiphilum fumariolicum SolV Anvar, Seyed; Frank, Jeroen; Pol, Arjan BMC Genomics, Vol. 15, Issue 1 https://doi.org/10.1186/1471-2164-15-914	journal	January 2014
Genomic Insights into Methanotrophy: The Complete Genome Sequence of Methylococcus capsulatus (Bath) Ward, Naomi; Larsen, Øivind; Sakwa, James PLoS Biology, Vol. 2, Issue 10 https://doi.org/10.1371/journal.pbio.0020303	journal	September 2004
Methane oxidation at 55 C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum Islam, T.; Jensen, S.; Reigstad, L. J. Proceedings of the National Academy of Sciences, Vol. 105, Issue 1, p. 300-304 https://doi.org/10.1073/pnas.0704162105	journal	January 2008
MxaY regulates the lanthanide-mediated methanol dehydrogenase switch in Methylomicrobium buryatense Chu, Frances; Beck, David A. C.; Lidstrom, Mary E. PeerJ, Vol. 4 https://doi.org/10.7717/peerj.2435	journal	January 2016
Structure and Spectroscopy of Copper−Dioxygen Complexes Mirica, Liviu M.; Ottenwaelder, Xavier; Stack, T. Daniel P. Chemical Reviews, Vol. 104, Issue 2 https://doi.org/10.1021/cr020632z	journal	February 2004
Alkane Oxidation: Methane Monooxygenases, Related Enzymes, and Their Biomimetics Wang, Vincent C. -C.; Maji, Suman; Chen, Peter P. -Y. Chemical Reviews, Vol. 117, Issue 13 https://doi.org/10.1021/acs.chemrev.6b00624	journal	February 2017
The Particulate Methane Monooxygenase from Methylococcus capsulatus (Bath) Is a Novel Copper-containing Three-subunit Enzyme : ISOLATION AND CHARACTERIZATION Nguyen, Hiep-Hoa T.; Elliott, Sean J.; Yip, John Hon-Kay Journal of Biological Chemistry, Vol. 273, Issue 14 https://doi.org/10.1074/jbc.273.14.7957	journal	April 1998
Identification of proteins involved in formaldehyde metabolism by Rhodobacter sphaeroides Wilson, S. M.; Gleisten, M. P.; Donohue, T. J. Microbiology, Vol. 154, Issue 1 https://doi.org/10.1099/mic.0.2007/011346-0	journal	January 2008
Conversion of Methane to Methanol at the Mononuclear and Dinuclear Copper Sites of Particulate Methane Monooxygenase (pMMO): A DFT and QM/MM Study Yoshizawa, Kazunari; Shiota, Yoshihito Journal of the American Chemical Society, Vol. 128, Issue 30 https://doi.org/10.1021/ja061604r	journal	August 2006
The more, the merrier: heterotroph richness stimulates methanotrophic activity Ho, Adrian; de Roy, Karen; Thas, Olivier The ISME Journal, Vol. 8, Issue 9 https://doi.org/10.1038/ismej.2014.74	journal	May 2014
The role of organic acids in mineral weathering Drever, J. I.; Stillings, L. L. Colloids and Surfaces A: Physicochemical and Engineering Aspects, Vol. 120, Issue 1-3 https://doi.org/10.1016/S0927-7757(96)03720-X	journal	February 1997
Detoxification of Mercury by Methanobactin from Methylosinus trichosporium OB3b Vorobev, Alexey; Jagadevan, Sheeja; Baral, Bipin S. Applied and Environmental Microbiology, Vol. 79, Issue 19 https://doi.org/10.1128/AEM.01673-13	journal	July 2013
The Methylococcus capsulatus (Bath) Secreted Protein, MopE*, Binds Both Reduced and Oxidized Copper Ve, Thomas; Mathisen, Karina; Helland, Ronny PLoS ONE, Vol. 7, Issue 8 https://doi.org/10.1371/journal.pone.0043146	journal	August 2012
A new cofactor in a prokaryotic enzyme: tryptophan tryptophylquinone as the redox prosthetic group in methylamine dehydrogenase McIntire, W.; Wemmer, D.; Chistoserdov, A. Science, Vol. 252, Issue 5007 https://doi.org/10.1126/science.2028257	journal	May 1991
Siderophores: Structure and Function of Microbial Iron Transport Compounds Neilands, J. B. Journal of Biological Chemistry, Vol. 270, Issue 45 https://doi.org/10.1074/jbc.270.45.26723	journal	November 1995
Metabolic engineering in methanotrophic bacteria Kalyuzhnaya, Marina G.; Puri, Aaron W.; Lidstrom, Mary E. Metabolic Engineering, Vol. 29 https://doi.org/10.1016/j.ymben.2015.03.010	journal	May 2015
Autotrophic Carbon Dioxide Fixation via the Calvin-Benson-Bassham Cycle by the Denitrifying Methanotroph “Candidatus Methylomirabilis oxyfera” Rasigraf, Olivia; Kool, Dorien M.; Jetten, Mike S. M. Applied and Environmental Microbiology, Vol. 80, Issue 8 https://doi.org/10.1128/AEM.04199-13	journal	February 2014
Possible Peroxo State of the Dicopper Site of Particulate Methane Monooxygenase from Combined Quantum Mechanics and Molecular Mechanics Calculations Itoyama, Shuhei; Doitomi, Kazuki; Kamachi, Takashi Inorganic Chemistry, Vol. 55, Issue 6 https://doi.org/10.1021/acs.inorgchem.5b02603	journal	February 2016
XoxF Acts as the Predominant Methanol Dehydrogenase in the Type I Methanotroph Methylomicrobium buryatense Chu, Frances; Lidstrom, Mary E. Journal of Bacteriology, Vol. 198, Issue 8 https://doi.org/10.1128/JB.00959-15	journal	February 2016
X-ray Absorption and EPR Studies on the Copper Ions Associated with the Particulate Methane Monooxygenase from Methylococcus capsulatus (Bath). Cu(I) Ions and Their Implications Nguyen, Hiep-Hoa T.; Nakagawa, Kent H.; Hedman, Britt Journal of the American Chemical Society, Vol. 118, Issue 50 https://doi.org/10.1021/ja961778g	journal	January 1996
Lanthanide Chemistry: From Coordination in Chemical Complexes Shaping Our Technology to Coordination in Enzymes Shaping Bacterial Metabolism Martinez-Gomez, Norma Cecilia; Vu, Huong N.; Skovran, Elizabeth Inorganic Chemistry, Vol. 55, Issue 20 https://doi.org/10.1021/acs.inorgchem.6b00919	journal	September 2016
Quantum mechanical calculations suggest that lytic polysaccharide monooxygenases use a copper-oxyl, oxygen-rebound mechanism Kim, S.; Stahlberg, J.; Sandgren, M. Proceedings of the National Academy of Sciences, Vol. 111, Issue 1 https://doi.org/10.1073/pnas.1316609111	journal	December 2013
A four-helix bundle stores copper for methane oxidation Vita, Nicolas; Platsaki, Semeli; Baslé, Arnaud Nature, Vol. 525, Issue 7567 https://doi.org/10.1038/nature14854	journal	August 2015
An assay for screening microbial cultures for chalkophore production Yoon, Sukhwan; Kraemer, Stephan M.; DiSpirito, Alan A. Environmental Microbiology Reports, Vol. 2, Issue 2 https://doi.org/10.1111/j.1758-2229.2009.00125.x	journal	April 2010
Environmental proteomics of microbial plankton in a highly productive coastal upwelling system Sowell, Sarah M.; Abraham, Paul E.; Shah, Manesh The ISME Journal, Vol. 5, Issue 5 https://doi.org/10.1038/ismej.2010.168	journal	November 2010
Mechanistic studies of a protonolytic organomercurial cleaving enzyme: bacterial organomercurial lyase Begley, Tadhg P.; Walts, Alan E.; Walsh, Christopher T. Biochemistry, Vol. 25, Issue 22 https://doi.org/10.1021/bi00370a064	journal	November 1986
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria Delmotte, N.; Knief, C.; Chaffron, S. Proceedings of the National Academy of Sciences, Vol. 106, Issue 38 https://doi.org/10.1073/pnas.0905240106	journal	September 2009
Molecular and mutational analysis of a DNA region separating two methylotrophy gene clusters in Methylobacterium extorquens AM1 Chistoserdova, L.; Lidstrom, M. E. Microbiology, Vol. 143, Issue 5 https://doi.org/10.1099/00221287-143-5-1729	journal	May 1997
Comprehensive proteomics of Methylobacterium extorquens AM1 metabolism under single carbon and nonmethylotrophic conditions Bosch, Gundula; Skovran, Elizabeth; Xia, Qiangwei PROTEOMICS, Vol. 8, Issue 17 https://doi.org/10.1002/pmic.200800152	journal	September 2008
Development of the Tricopper Cluster as a Catalyst for the Efficient Conversion of Methane into MeOH Chen, Peter P. -Y.; Nagababu, Penumaka; Yu, Steve S. -F. ChemCatChem, Vol. 6, Issue 2 https://doi.org/10.1002/cctc.201300473	journal	September 2013
Methanobactin and MmoD work in concert to act as the ‘copper-switch’ in methanotrophs: Copper-switch in methanotrophy Semrau, Jeremy D.; Jagadevan, Sheeja; DiSpirito, Alan A. Environmental Microbiology https://doi.org/10.1111/1462-2920.12150	journal	May 2013
Outer membrane proteins of Methylococcus capsulatus (Bath) Fjellbirkeland, A.; Kleivdal, Hans; Joergensen, Carsten Archives of Microbiology, Vol. 168, Issue 2 https://doi.org/10.1007/s002030050478	journal	August 1997
Mössbauer Studies of the Membrane-Associated Methane Monooxygenase from Methylococcus capsulatus Bath: Evidence for a Diiron Center Martinho, Marlène; Choi, Dong W.; DiSpirito, Alan A. Journal of the American Chemical Society, Vol. 129, Issue 51 https://doi.org/10.1021/ja077682b	journal	December 2007
Identification of a Copper-Responsive Two-Component System on the Chromosome of Escherichia coli K-12 Munson, G. P.; Lam, D. L.; Outten, F. W. Journal of Bacteriology, Vol. 182, Issue 20 https://doi.org/10.1128/JB.182.20.5864-5871.2000	journal	October 2000
Environmental Geochemistry of Cerium: Applications and Toxicology of Cerium Oxide Nanoparticles Dahle, Jessica; Arai, Yuji International Journal of Environmental Research and Public Health, Vol. 12, Issue 2 https://doi.org/10.3390/ijerph120201253	journal	January 2015
Cell biology and molecular basis of denitrification. Zumft, W. G. Microbiology and molecular biology reviews : MMBR, Vol. 61, Issue 4 https://doi.org/10.1128/.61.4.533-616.1997	journal	January 1997
Methanobactin and the Link between Copper and Bacterial Methane Oxidation DiSpirito, Alan A.; Semrau, Jeremy D.; Murrell, J. Colin Microbiology and Molecular Biology Reviews, Vol. 80, Issue 2 https://doi.org/10.1128/MMBR.00058-15	journal	March 2016
Microbial solubilization and immobilization of toxic metals: key biogeochemical processes for treatment of contamination White, C.; Sayer, J. A.; Gadd, G. M. FEMS Microbiology Reviews, Vol. 20, Issue 3-4 https://doi.org/10.1111/j.1574-6976.1997.tb00333.x	journal	July 1997
Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components Quinlan, R. J.; Sweeney, M. D.; Lo Leggio, L. Proceedings of the National Academy of Sciences, Vol. 108, Issue 37, p. 15079-15084 https://doi.org/10.1073/pnas.1105776108	journal	August 2011
TIGRFAMs and Genome Properties in 2013 Haft, Daniel H.; Selengut, Jeremy D.; Richter, Roland A. Nucleic Acids Research, Vol. 41, Issue D1 https://doi.org/10.1093/nar/gks1234	journal	November 2012
Stress resistance and C1 metabolism involved in plant colonization of a methanotroph Methylosinus sp. B4S Iguchi, Hiroyuki; Sato, Izuru; Yurimoto, Hiroya Archives of Microbiology, Vol. 195, Issue 10-11 https://doi.org/10.1007/s00203-013-0922-6	journal	September 2013
Microbes and metals Ehrlich, H. L. Applied Microbiology and Biotechnology, Vol. 48, Issue 6 https://doi.org/10.1007/s002530051116	journal	December 1997
Cerium Regulates Expression of Alternative Methanol Dehydrogenases in Methylosinus trichosporium OB3b Farhan Ul Haque, Muhammad; Kalidass, Bhagyalakshmi; Bandow, Nathan Applied and Environmental Microbiology, Vol. 81, Issue 21 https://doi.org/10.1128/AEM.02542-15	journal	August 2015
Electroporation-Based Genetic Manipulation in Type I Methanotrophs Yan, Xin; Chu, Frances; Puri, Aaron W. Applied and Environmental Microbiology, Vol. 82, Issue 7 https://doi.org/10.1128/AEM.03724-15	journal	January 2016
NMR, Mass Spectrometry and Chemical Evidence Reveal a Different Chemical Structure for Methanobactin That Contains Oxazolone Rings Behling, Lee A.; Hartsel, Scott C.; Lewis, David E. Journal of the American Chemical Society, Vol. 130, Issue 38 https://doi.org/10.1021/ja804747d	journal	September 2008
Isolation of Methanobactin from the Spent Media of Methane-Oxidizing Bacteria Bandow, Nathan L.; Gallagher, Warren H.; Behling, Lee Methods in Methane Metabolism, Part B: Methanotrophy https://doi.org/10.1016/B978-0-12-386905-0.00017-6	book	January 2011
Marker Exchange Mutagenesis of mxaF , Encoding the Large Subunit of the Mxa Methanol Dehydrogenase, in Methylosinus trichosporium OB3b Farhan Ul Haque, Muhammad; Gu, Wenyu; DiSpirito, Alan A. Applied and Environmental Microbiology, Vol. 82, Issue 5 https://doi.org/10.1128/AEM.03615-15	journal	December 2015
Methylosphaera hansonii gen. nov., sp. nov., a psychrophilic, group I methanotroph from Antarctic marine-salinity, meromictic lakes Bowman, J. P.; McCammon, S. A.; Skerrat, J. H. Microbiology, Vol. 143, Issue 4 https://doi.org/10.1099/00221287-143-4-1451	journal	April 1997
Contributions of Five Secondary Metal Uptake Systems to Metal Homeostasis of Cupriavidus metallidurans CH34 Kirsten, A.; Herzberg, M.; Voigt, A. Journal of Bacteriology, Vol. 193, Issue 18 https://doi.org/10.1128/JB.05293-11	journal	July 2011
Rare earth elements in soil and plant systems - A review Tyler, Germund Plant and Soil, Vol. 267, Issue 1-2 https://doi.org/10.1007/s11104-005-4888-2	journal	December 2004
Highly efficient methane biocatalysis revealed in a methanotrophic bacterium Kalyuzhnaya, M. G.; Yang, S.; Rozova, O. N. Nature Communications, Vol. 4, Issue 1 https://doi.org/10.1038/ncomms3785	journal	December 2013
The relationship between protein structure and function: a comprehensive survey with application to the yeast genome Hegyi, Hedi; Gerstein, Mark Journal of Molecular Biology, Vol. 288, Issue 1 https://doi.org/10.1006/jmbi.1999.2661	journal	April 1999
Transcriptomic profiling of Methylococcus capsulatus (Bath) during growth with two different methane monooxygenases Larsen, Øivind; Karlsen, Odd A. MicrobiologyOpen, Vol. 5, Issue 2 https://doi.org/10.1002/mbo3.324	journal	December 2015
Oxidation of methane by a biological dicopper centre Balasubramanian, Ramakrishnan; Smith, Stephen M.; Rawat, Swati Nature, Vol. 465, Issue 7294 https://doi.org/10.1038/nature08992	journal	April 2010
Characterization of Fluorescent and Nonfluorescent Peptide Siderophores Produced by Pseudomonas syringae Strains and Their Potential Use in Strain Identification Bultreys, A.; Gheysen, I.; Maraite, H. Applied and Environmental Microbiology, Vol. 67, Issue 4 https://doi.org/10.1128/AEM.67.4.1718-1727.2001	journal	April 2001
PQQ-dependent methanol dehydrogenases: rare-earth elements make a difference Keltjens, Jan T.; Pol, Arjan; Reimann, Joachim Applied Microbiology and Biotechnology, Vol. 98, Issue 14 https://doi.org/10.1007/s00253-014-5766-8	journal	May 2014
The Surface-Associated and Secreted MopE Protein of Methylococcus capsulatus (Bath) Responds to Changes in the Concentration of Copper in the Growth Medium Karlsen, O. A.; Berven, F. S.; Stafford, G. P. Applied and Environmental Microbiology, Vol. 69, Issue 4 https://doi.org/10.1128/AEM.69.4.2386-2388.2003	journal	April 2003
Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia : Perspectives on methanotrophic Op den Camp, Huub J. M.; Islam, Tajul; Stott, Matthew B. Environmental Microbiology Reports, Vol. 1, Issue 5 https://doi.org/10.1111/j.1758-2229.2009.00022.x	journal	March 2009
The TIM-barrel fold: a versatile framework for efficient enzymes Wierenga, R. K. FEBS Letters, Vol. 492, Issue 3 https://doi.org/10.1016/S0014-5793(01)02236-0	journal	March 2001
Methylmercury uptake and degradation by methanotrophs Lu, Xia; Gu, Wenyu; Zhao, Linduo Science Advances, Vol. 3, Issue 5 https://doi.org/10.1126/sciadv.1700041	journal	May 2017
Ore Leaching by Bacteria Lundgren, D. G.; Silver, M. Annual Review of Microbiology, Vol. 34, Issue 1 https://doi.org/10.1146/annurev.mi.34.100180.001403	journal	October 1980
Expanding the Verrucomicrobial Methanotrophic World: Description of Three Novel Species of Methylacidimicrobium gen. nov. van Teeseling, Muriel C. F.; Pol, Arjan; Harhangi, Harry R. Applied and Environmental Microbiology, Vol. 80, Issue 21 https://doi.org/10.1128/AEM.01838-14	journal	August 2014
Nitrate leaching in an Andisol treated with different types of fertilizers Maeda, Morihiro; Zhao, Bingzi; Ozaki, Yasuo Environmental Pollution, Vol. 121, Issue 3 https://doi.org/10.1016/S0269-7491(02)00233-6	journal	March 2003
Copper and cerium-regulated gene expression in Methylosinus trichosporium OB3b Gu, Wenyu; Semrau, Jeremy D. Applied Microbiology and Biotechnology, Vol. 101, Issue 23-24 https://doi.org/10.1007/s00253-017-8572-2	journal	October 2017
Molecular structure and gene analysis of Ce3+-induced methanol dehydrogenase of Bradyrhizobium sp. MAFF211645 Fitriyanto, Nanung Agus; Fushimi, Mako; Matsunaga, Mika Journal of Bioscience and Bioengineering, Vol. 111, Issue 6 https://doi.org/10.1016/j.jbiosc.2011.01.015	journal	June 2011
A Comparison of Methanobactins from Methylosinus trichosporium OB3b and Methylocystis Strain SB2 Predicts Methanobactins Are Synthesized from Diverse Peptide Precursors Modified To Create a Common Core for Binding and Reducing Copper Ions Krentz, Benjamin D.; Mulheron, Heidi J.; Semrau, Jeremy D. Biochemistry, Vol. 49, Issue 47 https://doi.org/10.1021/bi1014375	journal	November 2010
Taxonomic Characterization of New Alkaliphilic and Alkalitolerant Methanotrophs from Soda Lakes of the Southeastern Transbaikal Region and description of Methylomicrobium buryatense sp.nov. Kaluzhnaya, Marina; Khmelenina, Valentina; Eshinimaev, Bulat Systematic and Applied Microbiology, Vol. 24, Issue 2 https://doi.org/10.1078/0723-2020-00028	journal	January 2001
The membrane-associated form of methane mono-oxygenase from Methylococcus capsulatus (Bath) is a copper/iron protein Basu, Piku; Katterle, Bettina; Andersson, K. Kristoffer Biochemical Journal, Vol. 369, Issue 2 https://doi.org/10.1042/bj20020823	journal	January 2003
Structural and Mechanistic Insights into Methane Oxidation by Particulate Methane Monooxygenase Balasubramanian, Ramakrishnan; Rosenzweig, Amy C. Accounts of Chemical Research, Vol. 40, Issue 7 https://doi.org/10.1021/ar700004s	journal	July 2007
MauG: a di-heme enzyme required for methylamine dehydrogenase maturation Wilmot, Carrie M.; Yukl, Erik T. Dalton Trans., Vol. 42, Issue 9 https://doi.org/10.1039/C2DT32059B	journal	January 2013
Uptake and effect of rare earth elements on gene expression in Methylosinus trichosporium OB3b Gu, Wenyu; Farhan Ul Haque, Muhammad; DiSpirito, Alan A. FEMS Microbiology Letters, Vol. 363, Issue 13 https://doi.org/10.1093/femsle/fnw129	journal	May 2016
Mechanisms of siderophore sorption to smectite and siderophore-enhanced release of structural Fe3+ Haack, Elizabeth A.; Johnston, Cliff T.; Maurice, Patricia A. Geochimica et Cosmochimica Acta, Vol. 72, Issue 14 https://doi.org/10.1016/j.gca.2008.03.027	journal	July 2008
Stimulation of Methanotrophic Growth in Cocultures by Cobalamin Excreted by Rhizobia Iguchi, Hiroyuki; Yurimoto, Hiroya; Sakai, Yasuyoshi Applied and Environmental Microbiology, Vol. 77, Issue 24 https://doi.org/10.1128/AEM.05834-11	journal	October 2011
Evidence for the transport of zinc(II) ions via the Pit inorganic phosphate transport system in Escherichia coli Beard, Steven J.; Hashim, Rohani; Wu, Guanghui FEMS Microbiology Letters, Vol. 184, Issue 2 https://doi.org/10.1111/j.1574-6968.2000.tb09019.x	journal	March 2000
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets Kumar, Sudhir; Stecher, Glen; Tamura, Koichiro Molecular Biology and Evolution, Vol. 33, Issue 7 https://doi.org/10.1093/molbev/msw054	journal	March 2016
The quinoprotein dehydrogenases for methanol and glucose Anthony, Christopher Archives of Biochemistry and Biophysics, Vol. 428, Issue 1 https://doi.org/10.1016/j.abb.2004.03.038	journal	August 2004
Copper stress underlies the fundamental change in intracellular location of methane mono-oxygenase in methane-oxidizing organisms: Studies in batch and continuous cultures Stanley, S. H.; Prior, S. D.; Leak, D. J. Biotechnology Letters, Vol. 5, Issue 7 https://doi.org/10.1007/BF00132233	journal	July 1983
Crystal structure of a membrane-bound metalloenzyme that catalyses the biological oxidation of methane Lieberman, Raquel L.; Rosenzweig, Amy C. Nature, Vol. 434, Issue 7030 https://doi.org/10.1038/nature03311	journal	January 2005
Distribution of Methanotrophs in the Phyllosphere Iguchi, Hiroyuki; Sato, Izuru; Sakakibara, Maiko Bioscience, Biotechnology, and Biochemistry, Vol. 76, Issue 8 https://doi.org/10.1271/bbb.120281	journal	August 2012
Copper complexation of methanobactin isolated from Methylosinus trichosporium OB3b: pH-dependent speciation and modeling Pesch, Marie-Laure; Christl, Iso; Hoffmann, Martin Journal of Inorganic Biochemistry, Vol. 116 https://doi.org/10.1016/j.jinorgbio.2012.07.008	journal	November 2012
The structure of bacterial quinoprotein dehydrogenases Anthony, C. International Journal of Biochemistry, Vol. 24, Issue 1 https://doi.org/10.1016/0020-711X(92)90226-Q	journal	January 1992
Lanthanide-Dependent Regulation of Methanol Oxidation Systems in Methylobacterium extorquens AM1 and Their Contribution to Methanol Growth Vu, Huong N.; Subuyuj, Gabriel A.; Vijayakumar, Srividhya Journal of Bacteriology, Vol. 198, Issue 8 https://doi.org/10.1128/JB.00937-15	journal	February 2016
Pseudomonas stutzeri N2O reductase contains CuA-type sites. Scott, R. A.; Zumft, W. G.; Coyle, C. L. Proceedings of the National Academy of Sciences, Vol. 86, Issue 11 https://doi.org/10.1073/pnas.86.11.4082	journal	June 1989
Mutagenesis of the hydrocarbon monooxygenase indicates a metal centre in subunit-C, and not subunit-B, is essential for copper-containing membrane monooxygenase activity Liew, E. F.; Tong, D.; Coleman, N. V. Microbiology, Vol. 160, Issue Pt_6 https://doi.org/10.1099/mic.0.078584-0	journal	March 2014
Functional investigation of methanol dehydrogenase-like protein XoxF in Methylobacterium extorquens AM1 Schmidt, S.; Christen, P.; Kiefer, P. Microbiology, Vol. 156, Issue 8 https://doi.org/10.1099/mic.0.038570-0	journal	May 2010
Methanobactin from Methylosinus trichosporium OB3b inhibits N2O reduction in denitrifiers Chang, Jin; Gu, Wenyu; Park, Doyoung The ISME Journal, Vol. 12, Issue 8 https://doi.org/10.1038/s41396-017-0022-8	journal	January 2018
Extractive Metallurgy of Rare Earths Krishnamurthy, Nagaiyar; Gupta, Chiranjib Kumar https://doi.org/10.1201/b19055	book	December 2015
Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia Hou, Shaobin; Makarova, Kira S.; Saw, Jimmy HW Biology Direct, Vol. 3, Issue 1 https://doi.org/10.1186/1745-6150-3-26	journal	January 2008
The nature of the copper ions in the membranes containing the particulate methane monooxygenase from Methylococcus capsulatus (Bath). Nguyen, H. H.; Shiemke, A. K.; Jacobs, S. J. Journal of Biological Chemistry, Vol. 269, Issue 21 https://doi.org/10.1016/S0021-9258(17)36565-1	journal	May 1994
Phenotypic characterization of copper-resistant mutants of Methylosinus trichosporium OB3b. Fitch, M. W.; Graham, D. W.; Arnold, R. G. Applied and Environmental Microbiology, Vol. 59, Issue 9 https://doi.org/10.1128/aem.59.9.2771-2776.1993	journal	January 1993
Methylosinus trichosporium OB3b Mutants Having Constitutive Expression of Soluble Methane Monooxygenase in the Presence of High Levels of Copper Phelps, Patricia A.; Agarwal, Sandeep K.; Speitel, Gerald E. Applied and Environmental Microbiology, Vol. 58, Issue 11 https://doi.org/10.1128/aem.58.11.3701-3708.1992	journal	January 1992
Cell biology and molecular basis of denitrification Zumft, W. G. Microbiology and Molecular Biology Reviews, Vol. 61, Issue 4 https://doi.org/10.1128/mmbr.61.4.533-616.1997	journal	December 1997
Fission-Product and Cerium Uptake by Bacteria, Yeasts, and Molds1 Johnson, G. T.; Kyker, G. C. Journal of Bacteriology, Vol. 81, Issue 5 https://doi.org/10.1128/jb.81.5.733-740.1961	journal	January 1961
Nucleotide metabolism and its control in lactic acid bacteria Kilstrup, M.; Hammer, K.; Ruhdaljensen, P. FEMS Microbiology Reviews, Vol. 29, Issue 3 https://doi.org/10.1016/j.femsre.2005.04.006	journal	August 2005
Microbes and Metals Frankland, G. C. Nature, Vol. 51, Issue 1330 https://doi.org/10.1038/051611a0	journal	April 1895
An SHR–SCR module specifies legume cortical cell fate to enable nodulation Dong, Wentao; Zhu, Yayun; Chang, Huizhong Nature, Vol. 589, Issue 7843 https://doi.org/10.1038/s41586-020-3016-z	journal	December 2020
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria Delmotte, N.; Knief, C.; Chaffron, S. National Academy of Sciences https://doi.org/10.5167/uzh-27245	text	January 2009
Quantitative Transcriptomics Reveals the Growth- and Nutrient-Dependent Response of a Streamlined Marine Methylotroph to Methanol and Naturally Occurring Dissolved Organic Matter W., Becker, Jamie; A., Sosa, Oscar; J., Repeta, Daniel The University of North Carolina at Chapel Hill University Libraries https://doi.org/10.17615/vkqn-y892	text	January 2016
Structure and Spectroscopy of Copper—Dioxygen Complexes Mirica, Liviu M.; Ottenwaelder, Xavier; Stack, T. Daniel P. ChemInform, Vol. 35, Issue 19 https://doi.org/10.1002/chin.200419297	journal	May 2004
Structural and Mechanistic Insights into Methane Oxidation by Particulate Methane Monooxygenase Balasubramanian, Ramakrishnan; Rosenzweig, Amy C. ChemInform, Vol. 38, Issue 41 https://doi.org/10.1002/chin.200741274	journal	October 2007

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
36 MATERIALS SCIENCE
methanotrophy
methanobactin
copper
mercury
rare-earth elements
54 ENVIRONMENTAL SCIENCES
methanotropy
methanobactin
metals
methane