Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle

Anantharaman, Karthik; Hausmann, Bela; Jungbluth, Sean P.; Kantor, Rose S.; Lavy, Adi; Warren, Lesley A.; Rappé, Michael S.; Pester, Michael; Loy, Alexander; Thomas, Brian C.; Banfield, Jillian F.

doi:10.1038/s41396-018-0078-0

Title: Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle

Journal Article · Wed Feb 21 00:00:00 EST 2018 · The ISME Journal

DOI:https://doi.org/10.1038/s41396-018-0078-0· OSTI ID:1478346

Anantharaman, Karthik ^[1];

^[2]; Jungbluth, Sean P. ^[3]; Kantor, Rose S. ^[4]; Lavy, Adi ^[5]; Warren, Lesley A. ^[6]; Rappé, Michael S. ^[7]; Pester, Michael ^[8];

^[2]; Thomas, Brian C. ^[5];

^[9]

Univ. of California, Berkeley, CA (United States). Dept. of Earth and Planetary Science, Berkeley, CA (United States); Univ. of Wisconsin, Madison, WI (United States). Dept. of Bacteriology
Univ. of Vienna (Austria). Division of Microbial Ecology, Department of Microbiology and Ecosystem Science, Research Network Chemistry meets Microbiology
Univ. of Southern California, Los Angeles, CA (United States). Center for Dark Energy Biosphere Investigations; USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
Univ. of California, Berkeley, CA (United States). Dept. of Plant and Microbial Biology
Univ. of California, Berkeley, CA (United States). Dept. of Earth and Planetary Science, Berkeley, CA (United States)
Univ. of Toronto, ON (Canada). Dept. of Civil Engineering
Univ. of Hawaii, Manoa, Kaneohe, HI (United States). Hawaii Inst. of Marine Biology
Leibniz Inst. DSMZ, Braunschweig (Germany). Dept. of Microorganisms, and German Collection of Microorganisms and Cell Cultures
Univ. of California, Berkeley, CA (United States). Dept. of Earth and Planetary Science, Berkeley, CA (United States), and Dept. of Environmental Science, Policy, and Management; Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Earth and Environmental Sciences

A critical step in the biogeochemical cycle of sulfur on Earth is microbial sulfate reduction, yet organisms from relatively few lineages have been implicated in this process. Previous studies using functional marker genes have detected abundant, novel dissimilatory sulfite reductases (DsrAB) that could confer the capacity for microbial sulfite/sulfate reduction but were not affiliated with known organisms. Thus, the identity of a significant fraction of sulfate/sulfite-reducing microbes has remained elusive. Here we report the discovery of the capacity for sulfate/sulfite reduction in the genomes of organisms from 13 bacterial and archaeal phyla, thereby more than doubling the number of microbial phyla associated with this process. Eight of the 13 newly identified groups are candidate phyla that lack isolated representatives, a finding only possible given genomes from metagenomes. Organisms from Verrucomicrobia and two candidate phyla, Candidatus Rokubacteria and Candidatus Hydrothermarchaeota, contain some of the earliest evolved dsrAB genes. The capacity for sulfite reduction has been laterally transferred in multiple events within some phyla, and a key gene potentially capable of modulating sulfur metabolism in associated cells has been acquired by putatively symbiotic bacteria. We conclude that current functional predictions based on phylogeny significantly underestimate the extent of sulfate/sulfite reduction across Earth's ecosystems. Understanding the prevalence of this capacity is integral to interpreting the carbon cycle because sulfate reduction is often coupled to turnover of buried organic carbon. Our findings expand the diversity of microbial groups associated with sulfur transformations in the environment and motivate revision of biogeochemical process models based on microbial community composition.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1478346

Journal Information:: The ISME Journal, Vol. 12, Issue 7; ISSN 1751-7362

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 203 works

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References (75)

Sulfur Oxidation Genes in Diverse Deep-Sea Viruses Anantharaman, K.; Duhaime, M. B.; Breier, J. A. Science, Vol. 344, Issue 6185 https://doi.org/10.1126/science.1252229	journal	May 2014
Domain Evolution and Functional Diversification of Sulfite Reductases Dhillon, Ashita; Goswami, Sulip; Riley, Monica Astrobiology, Vol. 5, Issue 1 https://doi.org/10.1089/ast.2005.5.18	journal	February 2005
The CIPRES science gateway: a community resource for phylogenetic analyses Miller, Mark A.; Pfeiffer, Wayne; Schwartz, Terri Proceedings of the 2011 TeraGrid Conference on Extreme Digital Discovery - TG '11 https://doi.org/10.1145/2016741.2016785	conference	January 2011
The “bacterial heterodisulfide” DsrC is a key protein in dissimilatory sulfur metabolism Venceslau, S. S.; Stockdreher, Y.; Dahl, C. Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1837, Issue 7 https://doi.org/10.1016/j.bbabio.2014.03.007	journal	July 2014
Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum Anantharaman, Karthik; Brown, Christopher T.; Burstein, David PeerJ, Vol. 4 https://doi.org/10.7717/peerj.1607	journal	January 2016
Syntrophism Among Prokaryotes Schink, Bernhard; Stams, Alfons J. M. The Prokaryotes https://doi.org/10.1007/978-3-642-30123-0_59	book	January 2013
Corrosion by the Sulphate-reducing Bacteria King, R. A.; Miller, J. D. A. Nature, Vol. 233, Issue 5320 https://doi.org/10.1038/233491a0	journal	October 1971
Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes Loy, Alexander; Duller, Stephan; Baranyi, Christian Environmental Microbiology, Vol. 11, Issue 2 https://doi.org/10.1111/j.1462-2920.2008.01760.x	journal	February 2009
The I-TASSER Suite: protein structure and function prediction Yang, Jianyi; Yan, Renxiang; Roy, Ambrish Nature Methods, Vol. 12, Issue 1 https://doi.org/10.1038/nmeth.3213	journal	December 2014
Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids Jungbluth, Sean P.; Amend, Jan P.; Rappé, Michael S. Scientific Data, Vol. 4, Issue 1 https://doi.org/10.1038/sdata.2017.37	journal	March 2017
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies Stamatakis, Alexandros Bioinformatics, Vol. 30, Issue 9 https://doi.org/10.1093/bioinformatics/btu033	journal	January 2014
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes Pruesse, Elmar; Peplies, Jörg; Glöckner, Frank Oliver Bioinformatics, Vol. 28, Issue 14 https://doi.org/10.1093/bioinformatics/bts252	journal	May 2012
Occurrence, Classification, and Biological Function of Hydrogenases: An Overview Vignais, Paulette M.; Billoud, Bernard Chemical Reviews, Vol. 107, Issue 10, p. 4206-4272 https://doi.org/10.1021/cr050196r	journal	October 2007
The TIGRFAMs database of protein families Haft, D. H. Nucleic Acids Research, Vol. 31, Issue 1 https://doi.org/10.1093/nar/gkg128	journal	January 2003
The Archean Sulfur Cycle and the Early History of Atmospheric Oxygen Canfield, D. E. Science, Vol. 288, Issue 5466 https://doi.org/10.1126/science.288.5466.658	journal	April 2000
A Multicomponent Protein Complex Mediates Environmental Stress Signaling in Bacillus subtilis Kim, Tae-Jong; Gaidenko, Tatiana A.; Price, Chester W. Journal of Molecular Biology, Vol. 341, Issue 1 https://doi.org/10.1016/j.jmb.2004.05.043	journal	July 2004
Ocean biogeochemistry modeled with emergent trait-based genomics Coles, V. J.; Stukel, M. R.; Brooks, M. T. Science, Vol. 358, Issue 6367 https://doi.org/10.1126/science.aan5712	journal	November 2017
Unusual biology across a group comprising more than 15% of domain Bacteria Brown, Christopher T.; Hug, Laura A.; Thomas, Brian C. Nature, Vol. 523, Issue 7559 https://doi.org/10.1038/nature14486	journal	June 2015
The carbohydrate-active enzymes database (CAZy) in 2013 Lombard, Vincent; Golaconda Ramulu, Hemalatha; Drula, Elodie Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1178	journal	November 2013
Noisy: Identification of problematic columns in multiple sequence alignments Dress, Andreas WM; Flamm, Christoph; Fritzsch, Guido Algorithms for Molecular Biology, Vol. 3, Issue 1 https://doi.org/10.1186/1748-7188-3-7	journal	January 2008
The octahaem SirA catalyses dissimilatory sulfite reduction in Shewanella oneidensis MR-1 : Dissimilatory sulfite reduction by the octahaem SirA Shirodkar, Sheetal; Reed, Samantha; Romine, Margie Environmental Microbiology, Vol. 13, Issue 1 https://doi.org/10.1111/j.1462-2920.2010.02313.x	journal	August 2010
A new view of the tree of life Hug, Laura A.; Baker, Brett J.; Anantharaman, Karthik Nature Microbiology, Vol. 1, Issue 5 https://doi.org/10.1038/nmicrobiol.2016.48	journal	April 2016
Cytoplasmic Sulfurtransferases in the Purple Sulfur Bacterium Allochromatium vinosum: Evidence for Sulfur Transfer from DsrEFH to DsrC Stockdreher, Yvonne; Venceslau, Sofia S.; Josten, Michaele PLoS ONE, Vol. 7, Issue 7 https://doi.org/10.1371/journal.pone.0040785	journal	July 2012
The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough Heidelberg, John F.; Seshadri, Rekha; Haveman, Shelley A. Nature Biotechnology, Vol. 22, Issue 5 https://doi.org/10.1038/nbt959	journal	April 2004
Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages: N- and C-cycling organisms in the subsurface Hug, Laura A.; Thomas, Brian C.; Sharon, Itai Environmental Microbiology, Vol. 18, Issue 1 https://doi.org/10.1111/1462-2920.12930	journal	July 2015
Revisiting the dissimilatory sulfate reduction pathway: Revisiting the dissimilatory sulfate reduction pathway Bradley, A. S.; Leavitt, W. D.; Johnston, D. T. Geobiology, Vol. 9, Issue 5 https://doi.org/10.1111/j.1472-4669.2011.00292.x	journal	August 2011
Dissimilatory ATP sulfurylase from the hyperthermophilic sulfate reducer Archaeoglobus fulgidus belongs to the group of homo-oligomeric ATP sulfurylases Sperling, Detlef; Kappler, Ulrike; Wynen, Astrid FEMS Microbiology Letters, Vol. 162, Issue 2 https://doi.org/10.1111/j.1574-6968.1998.tb13007.x	journal	May 1998
Regulation of Dissimilatory Sulfur Oxidation in the Purple Sulfur Bacterium Allochromatium Vinosum Grimm, Frauke; Franz, Bettina; Dahl, Christiane Frontiers in Microbiology, Vol. 2 https://doi.org/10.3389/fmicb.2011.00051	journal	January 2011
MUSCLE: multiple sequence alignment with high accuracy and high throughput Edgar, R. C. Nucleic Acids Research, Vol. 32, Issue 5, p. 1792-1797 https://doi.org/10.1093/nar/gkh340	journal	March 2004
Pfam: the protein families database Finn, Robert D.; Bateman, Alex; Clements, Jody Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1223	journal	November 2013
UniProt: a hub for protein information Consortium, UniPot Nucleic Acids Research, Vol. 43, Issue D1, p. D204-D212 https://doi.org/10.1093/nar/gku989	journal	October 2014
Mineralization of organic matter in the sea bed—the role of sulphate reduction Jørgensen, Bo Barker Nature, Vol. 296, Issue 5858 https://doi.org/10.1038/296643a0	journal	April 1982
A Genomic Perspective on Protein Families Tatusov, R. L. Science, Vol. 278, Issue 5338 https://doi.org/10.1126/science.278.5338.631	journal	October 1997
Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases Müller, Albert Leopold; Kjeldsen, Kasper Urup; Rattei, Thomas The ISME Journal, Vol. 9, Issue 5 https://doi.org/10.1038/ismej.2014.208	journal	October 2014
Multiple Lateral Transfers of Dissimilatory Sulfite Reductase Genes between Major Lineages of Sulfate-Reducing Prokaryotes Klein, M.; Friedrich, M.; Roger, A. J. Journal of Bacteriology, Vol. 183, Issue 20 https://doi.org/10.1128/JB.183.20.6028-6035.2001	journal	October 2001
Characterization of anaerobic sulfite reduction by Salmonella typhimurium and purification of the anaerobically induced sulfite reductase. Hallenbeck, P. C.; Clark, M. A.; Barrett, E. L. Journal of Bacteriology, Vol. 171, Issue 6 https://doi.org/10.1128/jb.171.6.3008-3015.1989	journal	June 1989
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data Kearse, M.; Moir, R.; Wilson, A. Bioinformatics, Vol. 28, Issue 12 https://doi.org/10.1093/bioinformatics/bts199	journal	April 2012
Proterozoic Ocean Chemistry and Evolution: A Bioinorganic Bridge? Anbar, A. D. Science, Vol. 297, Issue 5584 https://doi.org/10.1126/science.1069651	journal	August 2002
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating Lartillot, Nicolas; Lepage, Thomas; Blanquart, Samuel Bioinformatics, Vol. 25, Issue 17 https://doi.org/10.1093/bioinformatics/btp368	journal	June 2009
Isotopic evidence for microbial sulphate reduction in the early Archaean era Shen, Yanan; Buick, Roger; Canfield, Donald E. Nature, Vol. 410, Issue 6824 https://doi.org/10.1038/35065071	journal	March 2001
Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO ₂ concentrations : Genomic resolution of a high-CO Probst, Alexander J.; Castelle, Cindy J.; Singh, Andrea Environmental Microbiology, Vol. 19, Issue 2 https://doi.org/10.1111/1462-2920.13362	journal	July 2016
Disguised as a Sulfate Reducer: Growth of the Deltaproteobacterium Desulfurivibrio alkaliphilus by Sulfide Oxidation with Nitrate Thorup, Casper; Schramm, Andreas; Findlay, Alyssa J. mBio, Vol. 8, Issue 4 https://doi.org/10.1128/mBio.00671-17	journal	July 2017
Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments Hernsdorf, Alex W.; Amano, Yuki; Miyakawa, Kazuya The ISME Journal, Vol. 11, Issue 8 https://doi.org/10.1038/ismej.2017.39	journal	March 2017
The life sulfuric: microbial ecology of sulfur cycling in marine sediments: Microbial sulfur cycling in marine sediments Wasmund, Kenneth; Mußmann, Marc; Loy, Alexander Environmental Microbiology Reports, Vol. 9, Issue 4 https://doi.org/10.1111/1758-2229.12538	journal	May 2017
The octahaem MccA is a haem c–copper sulfite reductase Hermann, Bianca; Kern, Melanie; La Pietra, Luigi Nature, Vol. 520, Issue 7549 https://doi.org/10.1038/nature14109	journal	February 2015
Sulfur Isotope Effects of Dissimilatory Sulfite Reductase Leavitt, William D.; Bradley, Alexander S.; Santos, André A. Frontiers in Microbiology, Vol. 6 https://doi.org/10.3389/fmicb.2015.01392	journal	December 2015
Crystal Structure of Dissimilatory Sulfite Reductase D (DsrD) Protein—Possible Interaction with B- and Z-DNA by Its Winged-Helix Motif Mizuno, Nobuhiro; Voordouw, Gerrit; Miki, Kunio Structure, Vol. 11, Issue 9 https://doi.org/10.1016/S0969-2126(03)00156-4	journal	September 2003
Importance of the DsrMKJOP complex for sulfur oxidation in Allochromatium vinosum and phylogenetic analysis of related complexes in other prokaryotes Sander, Johannes; Engels-Schwarzlose, Sabine; Dahl, Christiane Archives of Microbiology, Vol. 186, Issue 5 https://doi.org/10.1007/s00203-006-0156-y	journal	August 2006
Search and clustering orders of magnitude faster than BLAST Edgar, Robert C. Bioinformatics, Vol. 26, Issue 19, p. 2460-2461 https://doi.org/10.1093/bioinformatics/btq461	journal	August 2010
Commensal Bacteria, Redox Stress, and Colorectal Cancer: Mechanisms and Models Huycke, Mark M.; Gaskins, H. Rex Experimental Biology and Medicine, Vol. 229, Issue 7 https://doi.org/10.1177/153537020422900702	journal	July 2004
Accelerated Profile HMM Searches Eddy, Sean R. PLoS Computational Biology, Vol. 7, Issue 10 https://doi.org/10.1371/journal.pcbi.1002195	journal	October 2011
Phylogeny of the alpha and beta subunits of the dissimilatory adenosine-5'-phosphosulfate (APS) reductase from sulfate-reducing prokaryotes - origin and evolution of the dissimilatory sulfate-reduction pathway Meyer, B.; Kuever, J. Microbiology, Vol. 153, Issue 7 https://doi.org/10.1099/mic.0.2006/003152-0	journal	July 2007
Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms Hausmann, Bela; Knorr, Klaus-Holger; Schreck, Katharina The ISME Journal, Vol. 10, Issue 10 https://doi.org/10.1038/ismej.2016.42	journal	March 2016
Evolutionary timing of the origins of mesophilic sulphate reduction and oxygenic photosynthesis: a phylogenomic dating approach Blank, Carrine E. Geobiology, Vol. 2, Issue 1 https://doi.org/10.1111/j.1472-4677.2004.00020.x	journal	January 2004
Structural Insights into Inhibition of Bacillus anthracis Sporulation by a Novel Class of Non-heme Globin Sensor Domains Stranzl, Gudrun R.; Santelli, Eugenio; Bankston, Laurie A. Journal of Biological Chemistry, Vol. 286, Issue 10 https://doi.org/10.1074/jbc.M110.207126	journal	January 2011
Sulfur globule oxidation in green sulfur bacteria is dependent on the dissimilatory sulfite reductase system Holkenbrink, C.; Barbas, S. O.; Mellerup, A. Microbiology, Vol. 157, Issue 4 https://doi.org/10.1099/mic.0.044669-0	journal	January 2011
Identification and characterization of a bacterial hydrosulphide ion channel Czyzewski, Bryan K.; Wang, Da-Neng Nature, Vol. 483, Issue 7390 https://doi.org/10.1038/nature10881	journal	March 2012
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system Anantharaman, Karthik; Brown, Christopher T.; Hug, Laura A. Nature Communications, Vol. 7, Issue 1 https://doi.org/10.1038/ncomms13219	journal	October 2016
Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center Anantharaman, Karthik; Breier, John A.; Dick, Gregory J. The ISME Journal, Vol. 10, Issue 1 https://doi.org/10.1038/ismej.2015.81	journal	June 2015
Global rates of marine sulfate reduction and implications for sub-sea-floor metabolic activities Bowles, M. W.; Mogollon, J. M.; Kasten, S. Science, Vol. 344, Issue 6186 https://doi.org/10.1126/science.1249213	journal	May 2014
Microbiological disproportionation of inorganic sulfur compounds Finster, Kai Journal of Sulfur Chemistry, Vol. 29, Issue 3-4 https://doi.org/10.1080/17415990802105770	journal	August 2008
Sulfate-reducing microorganisms in wetlands – fameless actors in carbon cycling and climate change Pester, Michael Frontiers in Microbiology, Vol. 3 https://doi.org/10.3389/fmicb.2012.00072	journal	January 2012
Characterization of 16S rRNA genes from oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria. Voordouw, G.; Armstrong, S. M.; Reimer, M. F. Applied and environmental microbiology, Vol. 62, Issue 5 https://doi.org/10.1128/AEM.62.5.1623-1629.1996	journal	January 1996
Phylogeny of Dissimilatory Sulfite Reductases Supports an Early Origin of Sulfate Respiration Wagner, Michael; Roger, Andrew J.; Flax, Jodi L. Journal of Bacteriology, Vol. 180, Issue 11 https://doi.org/10.1128/JB.180.11.2975-2982.1998	journal	June 1998
The CIPRES science gateway: enabling high-impact science for phylogenetics researchers with limited resources Miller, Mark A.; Pfeiffer, Wayne; Schwartz, Terri Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment on Bridging from the eXtreme to the campus and beyond - XSEDE '12 https://doi.org/10.1145/2335755.2335836	conference	January 2012
Occurrence, Classification, and Biological Function of Hydrogenases: An Overview Vignais, Paulette M.; Billoud, Bernard ChemInform, Vol. 38, Issue 50 https://doi.org/10.1002/chin.200750259	journal	December 2007
Syntrophism among Prokaryotes Schink, Bernhard; Stams, Alfons J. M. The Prokaryotes https://doi.org/10.1007/0-387-30742-7_11	book	January 2006
Fine-scale population structure and evidence for local adaptation in Australian giant black tiger shrimp (Penaeus monodon) using SNP analysis Vu, Nga T. T.; Zenger, Kyall R.; Guppy, Jarrod L. BMC Genomics, Vol. 21, Issue 1 https://doi.org/10.1186/s12864-020-07084-x	journal	September 2020
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies Stamatakis, A. Karlsruhe https://doi.org/10.5445/ir/1000045818	text	January 2014
A novel membrane-bound respiratory complex from Desulfovibrio desulfuricans ATCC 27774 Pires, Ricardo H.; Lourenço, Alexandra I.; Morais, Francisco Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1605, Issue 1-3 https://doi.org/10.1016/s0005-2728(03)00065-3	journal	August 2003
Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes Mikan, Molly P.; Harvey, H. Rodger; Timmins-Schiffman, Emma The ISME Journal, Vol. 14, Issue 1 https://doi.org/10.1038/s41396-019-0503-z	journal	September 2019
Mating pair stabilization mediates bacterial conjugation species specificity Low, Wen Wen; Wong, Joshua L. C.; Beltran, Leticia C. Nature Microbiology, Vol. 7, Issue 7 https://doi.org/10.1038/s41564-022-01146-4	journal	June 2022
New Family of Regulators in the Environmental Signaling Pathway Which Activates the General Stress Transcription Factor B of Bacillus subtilis Akbar, S.; Gaidenko, T. A.; Kang, C. M. Journal of Bacteriology, Vol. 183, Issue 4 https://doi.org/10.1128/jb.183.4.1329-1338.2001	journal	February 2001
Clustered Genes Related to Sulfate Respiration in Uncultured Prokaryotes Support the Theory of Their Concomitant Horizontal Transfer Mussmann, M.; Richter, M.; Lombardot, T. Journal of Bacteriology, Vol. 187, Issue 20 https://doi.org/10.1128/jb.187.20.7126-7137.2005	journal	September 2005
A Comparative Genomic Analysis of Energy Metabolism in Sulfate Reducing Bacteria and Archaea Pereira, Inês A. Cardoso; Ramos, Ana Raquel; Grein, Fabian Frontiers in Microbiology, Vol. 2 https://doi.org/10.3389/fmicb.2011.00069	journal	January 2011

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Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake Vavourakis, Charlotte D.; Mehrshad, Maliheh; Balkema, Cherel BMC Biology, Vol. 17, Issue 1 https://doi.org/10.1186/s12915-019-0688-7	journal	August 2019
Metagenomic analysis of gut microbiome and resistome of diarrheal fecal samples from Kolkata, India, reveals the core and variable microbiota including signatures of microbial dark matter De, Rituparna; Mukhopadhyay, Asish Kumar; Dutta, Shanta Gut Pathogens, Vol. 12, Issue 1 https://doi.org/10.1186/s13099-020-00371-8	journal	July 2020
Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems Dalcin Martins, Paula; Danczak, Robert E.; Roux, Simon Microbiome, Vol. 6, Issue 1 https://doi.org/10.1186/s40168-018-0522-4	journal	August 2018
Unraveling the diversity of sedimentary sulfate-reducing prokaryotes (SRP) across Tibetan saline lakes using epicPCR Qin, Huayu; Wang, Shang; Feng, Kai Microbiome, Vol. 7, Issue 1 https://doi.org/10.1186/s40168-019-0688-4	journal	May 2019
Microbial succession during the transition from active to inactive stages of deep-sea hydrothermal vent sulfide chimneys Hou, Jialin; Sievert, Stefan M.; Wang, Yinzhao Microbiome, Vol. 8, Issue 1 https://doi.org/10.1186/s40168-020-00851-8	journal	June 2020
Uncovering the Uncultivated Majority in Antarctic Soils: Toward a Synergistic Approach Lambrechts, Sam; Willems, Anne; Tahon, Guillaume Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.00242	journal	February 2019
The Active Sulfate-Reducing Microbial Community in Littoral Sediment of Oligotrophic Lake Constance Wörner, Susanne; Pester, Michael Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.00247	journal	February 2019
The Biogeochemical Sulfur Cycle of Marine Sediments Jørgensen, Bo Barker; Findlay, Alyssa J.; Pellerin, André Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.00849	journal	April 2019
Shotgun Metagenomics Reveals the Benthic Microbial Community Response to Plastic and Bioplastic in a Coastal Marine Environment Pinnell, Lee J.; Turner, Jeffrey W. Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.01252	journal	June 2019
Dietary Factors in Sulfur Metabolism and Pathogenesis of Ulcerative Colitis Teigen, Levi M.; Geng, Zhuo; Sadowsky, Michael J. Nutrients, Vol. 11, Issue 4 https://doi.org/10.3390/nu11040931	journal	April 2019
Accurate and complete genomes from metagenomes Chen, Lin-Xing; Anantharaman, Karthik; Shaiber, Alon Genome Research, Vol. 30, Issue 3 https://doi.org/10.1101/gr.258640.119	journal	March 2020
Glacial Runoff Promotes Deep Burial of Sulfur Cycling-Associated Microorganisms in Marine Sediments Pelikan, Claus; Jaussi, Marion; Wasmund, Kenneth Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.02558	journal	November 2019
Highlight: Contribution of Ultra-Small Microbes to Global Carbon Cycles McGrath, Casey Genome Biology and Evolution, Vol. 11, Issue 5 https://doi.org/10.1093/gbe/evz089	journal	May 2019
Shotgun metagenomic sequencing from Manao-Pee cave, Thailand, reveals insight into the microbial community structure and its metabolic potential Wiseschart, Apirak; Mhuantong, Wuttichai; Tangphatsornruang, Sithichoke BMC Microbiology, Vol. 19, Issue 1 https://doi.org/10.1186/s12866-019-1521-8	journal	June 2019
Capability for arsenic mobilization in groundwater is distributed across broad phylogenetic lineages Danczak, Robert E.; Johnston, Michael D.; Kenah, Chris PLOS ONE, Vol. 14, Issue 9 https://doi.org/10.1371/journal.pone.0221694	journal	September 2019
Formation of Large Native Sulfur Deposits Does Not Require Molecular Oxygen L., Labrado, Amanda; Benjamin, Brunner,; M., Bernasconi, Stefano ETH Zurich https://doi.org/10.3929/ethz-b-000323373	text	January 2019

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