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June 1998 |
Micrometer-scale physical structure and microbial composition of soil macroaggregates
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October 2013 |
Separation power of the 95 substrates of the BIOLOG system determined in various soils
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March 1997 |
Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?
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February 2016 |
Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes: Deterministic assembly of hyporheic microbiomes
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March 2017 |
Sleuthing out bacterial identities
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May 1989 |
Effect of Sphingobium yanoikuyae B1 inoculation on bacterial community dynamics and polycyclic aromatic hydrocarbon degradation in aged and freshly PAH-contaminated soils
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November 2006 |
The Application of the Biolog EcoPlate Approach in Ecotoxicological Evaluation of Dairy Sewage Sludge
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August 2014 |
Effects of dissimilatory sulfate reduction on FeIII (hydr)oxide reduction and microbial community development
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March 2014 |
Chitin and corncobs as electron donor sources for the reductive dechlorination of tetrachloroethene
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June 2006 |
Impact of Organic Carbon Electron Donors on Microbial Community Development under Iron- and Sulfate-Reducing Conditions
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January 2016 |
Engineering microbial consortia for controllable outputs
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March 2016 |
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
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June 2010 |
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
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March 2010 |
UniFrac: an effective distance metric for microbial community comparison
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September 2010 |
Functional microbial diversity explains groundwater chemistry in a pristine aquifer
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January 2013 |
Conceptual Synthesis in Community Ecology
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June 2010 |
In vitro suppression of fungi caused by combinations of apparently non-antagonistic soil bacteria: Suppression of fungi by non-antagonistic soil bacteria
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January 2007 |
Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages
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July 2014 |
Culturing captures members of the soil rare biosphere: Rare biosphere of soil
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July 2012 |
Disentangling the importance of ecological niches from stochastic processes across scales
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August 2011 |
Plant-phytopathogen interactions: bacterial responses to environmental and plant stimuli: Molecular dialog between phytopathogens and plants
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January 2017 |
CO2-induced shift in microbial activity affects carbon trapping and water quality in anoxic bioreactors
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December 2013 |
Syntrophic exchange in synthetic microbial communities
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April 2014 |
Dispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology
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June 2015 |
Multivariate analyses in microbial ecology: Multivariate analyses in microbial ecology
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November 2007 |
The causes of Pseudomonas diversity
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October 2000 |
The short-term effects of salinization on anaerobic nutrient cycling and microbial community structure in sediment from a freshwater wetland
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June 2006 |
A new view of the tree of life
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April 2016 |
Quantifying community assembly processes and identifying features that impose them
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June 2013 |
Taxonomic characterization of Ochrobactrum sp. isolates from soil samples and wheat roots, and description of Ochrobactrum tritici sp. nov. and Ochrobactrum grignonense sp. nov
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November 2000 |
QIIME allows analysis of high-throughput community sequencing data
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April 2010 |
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
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October 2013 |
Metabolic specialization and the assembly of microbial communities
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May 2012 |
Proposal of Burkholderia gen. nov. and Transfer of Seven Species of the Genus Pseudomonas Homology Group II to the New Genus, with the Type Species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov.
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December 1992 |
Sphingobium amiense sp. nov., a novel nonylphenol-degrading bacterium isolated from a river sediment
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November 2003 |
Solute Concentrations Influence Microbial Methanogenesis in Coal-bearing Strata of the Cherokee Basin, USA
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November 2015 |
Spatial scale drives patterns in soil bacterial diversity: Spatial scale drives soil diversity
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March 2016 |
Community structure follows simple assembly rules in microbial microcosms
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March 2017 |
A direct test of nitrogen and phosphorus limitation to net primary productivity in a lowland tropical wet forest
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July 2013 |
Nitrous oxide production kinetics during nitrate reduction in river sediments
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March 2010 |
Diversity and occurrence of Burkholderia spp. in the natural environment
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July 2008 |
The Use of Carbon Substrate Utilization Patterns in Environmental and Ecological Microbiology
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March 1998 |
Deciphering microbial community robustness through synthetic ecology and molecular systems synecology
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June 2015 |
Pseudomonas, the dominant polycyclic aromatic hydrocarbon-degrading bacteria isolated from Antarctic soils and the role of large plasmids in horizontal gene transfer
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March 2006 |
Opening the black box of soil microbial diversity
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October 1999 |
LESSONS LEARNED FROM THE GENOME ANALYSIS OF RALSTONIA SOLANACEARUM
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September 2004 |
PyNAST: a flexible tool for aligning sequences to a template alignment
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November 2009 |
Kaistia adipata gen. nov., sp. nov., a novel .ALPHA.-proteobacterium
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January 2004 |
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
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December 2011 |
Rapid succession of uncultured marine bacterial and archaeal populations in a denitrifying continuous culture: Rapid succession in a denitrifying chemostat
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August 2014 |
Stochastic and deterministic assembly processes in subsurface microbial communities
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March 2012 |
Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp
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October 1999 |
Spatial and temporal changes in microbial community structure associated with recharge-influenced chemical gradients in a contaminated aquifer
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May 2004 |
Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale
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June 2009 |
The Aerobic Pseudomonads a Taxonomic Study
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May 1966 |
Phenotype MicroArrays for High-Throughput Phenotypic Testing and Assay of Gene Function
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July 2001 |
Alternative Pathways of Carbohydrate Utilization in Pseudomonads
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October 1984 |
Pyrosequencing enumerates and contrasts soil microbial diversity
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July 2007 |
Stream microbial diversity in response to environmental changes: review and synthesis of existing research
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May 2015 |
Examining the global distribution of dominant archaeal populations in soil
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November 2010 |
Differences in soluble organic carbon chemistry in pore waters sampled from different pore size domains
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April 2017 |
Aquifer environment selects for microbial species cohorts in sediment and groundwater
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February 2015 |
Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes
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March 2006 |
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
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April 2013 |
Synthetic cooperation in engineered yeast populations
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January 2007 |
Mutualistic interaction between dichloromethane- and chloromethane-degrading bacteria in an anaerobic mixed culture: Mutualistic degradation of chlorinated methanes
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October 2017 |
Abundant carbon substrates drive extremely high sulfate reduction rates and methane fluxes in Prairie Pothole Wetlands
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February 2017 |
Tackling soil diversity with the assembly of large, complex metagenomes
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March 2014 |
Biodegradation of aged diesel in diverse soil matrixes: impact of environmental conditions and bioavailability on microbial remediation capacity
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December 2012 |
Evaluation of cell activity and of methods for the cultivation of bacteria from a natural lake community
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March 1999 |
Defined spatial structure stabilizes a synthetic multispecies bacterial community
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November 2008 |
Small-sample estimation of negative binomial dispersion, with applications to SAGE data
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July 2007 |
Evolutionary Dynamics of Ralstonia solanacearum
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December 2006 |
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
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November 2009 |
Functional Diversity of the Microbial Community in Healthy Subjects and Periodontitis Patients Based on Sole Carbon Source Utilization
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March 2014 |
Differentiation between sediment and hypolimnion methanogen communities in humic lakes: Distinct hypolimnion methanogen communities
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December 2013 |
Redox microniches in groundwater: A model study on the geometric and kinetic conditions required for concomitant Fe oxide reduction, sulfate reduction, and methanogenesis: REDOX MICRONICHES IN GROUNDWATER
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December 2007 |
Genus-wide acid tolerance accounts for the biogeographical distribution of soil Burkholderia populations : Preference of
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August 2013 |
Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
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August 2009 |
Transfer of Two Burkholderia and An Alcaligenes Species to Ralstonia Gen. Nov. : Proposal of Ralstonia pickettii (Ralston, Palleroni and Doudoroff 1973) Comb. Nov., Ralstonia solanacearum (Smith 1896) Comb. Nov. and Ralstonia eutro
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November 1995 |
Dynamics in microbial communities: unraveling mechanisms to identify principles
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December 2014 |
The ecology and biogeochemistry of stream biofilms
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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
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March 2012 |
Microbial Community Response of an Organohalide Respiring Enrichment Culture to Permanganate Oxidation
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August 2015 |
Defining seasonal marine microbial community dynamics
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August 2011 |
One-dimensional metric for tracking bacterial community divergence using sole carbon source utilization patterns
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October 2009 |
Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points: Microbial community succession and disturbance
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April 2014 |
Competition and coexistence of sulfate-reducing and methanogenic populations in anaerobic biofilms.
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January 1996 |
Niche and neutral processes both shape community structure in parallelized, aerobic, single carbon-source enrichments
- Flynn, Theodore; Koval, Jason; Greenwald, Stephanie
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Argonne National Laboratory (ANL), Argonne, IL (United States); Argonne National Laboratory (ANL)
https://doi.org/10.17038/1371460
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January 2017 |
Next generation sequencing reveals limitation of qPCR methods in quantifying emerging antibiotic resistance genes (ARGs) in the environment
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March 2021 |
First principles of terrestrial life: exemplars for potential extra-terrestrial biology
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July 2022 |
Microbiota-accessible carbohydrates suppress Clostridium difficile infection in a murine model
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April 2018 |
Targeting redox metabolism: the perfect storm induced by acrylamide poisoning in the brain
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January 2020 |
Infant gut microbiota characteristics generally do not modify effects of lipid-based nutrient supplementation on growth or inflammation: secondary analysis of a randomized controlled trial in Malawi
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September 2020 |
Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data
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October 2013 |
Metatranscriptome of an Anaerobic Benzene-Degrading, Nitrate-Reducing Enrichment Culture Reveals Involvement of Carboxylation in Benzene Ring Activation
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May 2014 |
Microbial Community Structure and Denitrification in a Wetland Mitigation Bank
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May 2010 |
Removal of Pharmaceuticals and Personal Care Products during Water Recycling: Microbial Community Structure and Effects of Substrate Concentration
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February 2014 |
Aromatic-degrading Sphingomonas isolates from the deep subsurface.
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January 1995 |
Molecular cloning of novel genes for polycyclic aromatic hydrocarbon degradation from Comamonas testosteroni GZ39.
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January 1996 |
Composition of Soil Microbial Communities Enriched on a Mixture of Aromatic Hydrocarbons
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December 2000 |
Biogeography and Degree of Endemicity of Fluorescent Pseudomonas Strains in Soil
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December 2000 |
Degradation of Polycyclic Aromatic Hydrocarbons at Low Temperature under Aerobic and Nitrate-Reducing Conditions in Enrichment Cultures from Northern Soils
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January 2003 |
Contributions of Atmospheric CO and Hydrogen Uptake to Microbial Dynamics on Recent Hawaiian Volcanic Deposits
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July 2003 |
Multivariate Analyses of Burkholderia Species in Soil: Effect of Crop and Land Use History
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July 2004 |
Organization and Regulation of Pentachlorophenol-Degrading Genes in Sphingobium chlorophenolicum ATCC 39723
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Patterns and Processes of Microbial Community Assembly
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September 2013 |