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Title: Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701T) and emended description of the genus Thermanaerovibrio

Journal Article · · Standards in Genomic Sciences
DOI:https://doi.org/10.4056/sigs.4237901· OSTI ID:1407205
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  1. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  2. Leibniz Inst. DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  4. St. Petersburg State Univ. (Russian Federation); St. Petersburg Academic Univ. (Russian Federation)
  5. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  6. Helmholtz Centre for Infection Research, Braunschweig (Germany)
  7. CSIR-Inst. of Microbial Technology, Chandigarh (India)
  8. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California Davis Genome Center, CA (United States)
  9. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of Queensland, Brisbane, QLD (Australia)
+ Show Author Affiliations

Thermanaerovibrio velox Zavarzina et al. 2000 is a member of the Synergistaceae, a family in the phylum Synergistetes that is already well-characterized at the genome level. Members of this phylum were described as Gram-negative staining anaerobic bacteria with a rod/vibrioid cell shape and possessing an atypical outer cell envelope. They inhabit a large variety of anaerobic environments including soil, oil wells, wastewater treatment plants and animal gastrointestinal tracts. They are also found to be linked to sites of human diseases such as cysts, abscesses, and areas of periodontal disease. The moderately thermophilic and organotrophic T. velox shares most of its morphologic and physiologic features with the closely related species, T. acidaminovorans. In addition to Su883T, the type strain of T. acidaminovorans, stain Z-9701T is the second type strain in the genus Thermanaerovibrio to have its genome sequence published. Here we describe the features of this organism, together with the non-contiguous genome sequence and annotation. The 1,880,838 bp long chromosome (non-contiguous finished sequence) with its 1,751 protein-coding and 59 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER); German Research Foundation (DFG); Russian Ministry of Science
Grant/Contract Number:
AC02-05CH11231; AC52-07NA27344; AC02-06NA25396; AC05-00OR22725; INST 599/1-2; 11.G34.31.0068
OSTI ID:
1407205
Journal Information:
Standards in Genomic Sciences, Vol. 9, Issue 1; ISSN 1944-3277
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 2 works
Citation information provided by
Web of Science

References (34)

Thermanaerovibrio velox sp. nov., a new anaerobic, thermophilic, organotrophic bacterium that reduces elemental sulfur, and emended description of the genus Thermanaerovibrio journal May 2000
Phylogenetic relationships of three amino-acid-utilizing anaerobes, Selenomonas acidaminovorans, 'Selenomonas acidaminophila' and Eubacterium acidaminophilum, as inferred from partial 16S rDNA nucleotide sequences and proposal of Thermanaerovibrio acidaminovorans gen. nov., comb. nov. and Anaeromusa acidaminophila gen. nov., comb. nov. journal July 1999
Basic local alignment search tool journal October 1990
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB journal July 2006
Multiple sequence alignment using partial order graphs journal March 2002
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis journal April 2000
A Rapid Bootstrap Algorithm for the RAxML Web Servers journal October 2008
An empirical test of the midpoint rooting method: A TEST FOR THE MIDPOINT ROOTING METHOD journal December 2007
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata journal December 2011
Complete genome sequence of Aminobacterium colombiense type strain (ALA-1T) journal June 2010
Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T) journal May 2012
Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883T) journal November 2009
Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3T) journal January 2010
Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207T) journal August 2010
The minimum information about a genome sequence (MIGS) specification journal May 2008
Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names journal February 2013
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. journal June 1990
Description of 'Synergistetes' phyl. nov. and emended description of the phylum 'Deferribacteres' and of the family Syntrophomonadaceae, phylum 'Firmicutes' journal April 2009
Gene Ontology: tool for the unification of biology journal May 2000
Genome sequence-based species delimitation with confidence intervals and improved distance functions journal January 2013
En route to a genome-based classification of Archaea and Bacteria? journal June 2010
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea journal December 2009
The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation journal December 2012
The DNA Bank Network: The Start from a German Initiative journal March 2011
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
Prodigal: prokaryotic gene recognition and translation initiation site identification journal March 2010
The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes journal July 2009
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes journal May 2010
IMG ER: a system for microbial genome annotation expert review and curation journal June 2009
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison journal January 2010
Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs journal January 2010
The Genomic Standards Consortium journal June 2011
Dietary palmitic acid promotes a prometastatic memory via Schwann cells journal November 2021
Description of ‘Synergistetes’ phyl. nov. and emended description of the phylum ‘Deferribacteres’ and of the family Syntrophomonadaceae, phylum ‘Firmicutes’ journal July 2009

Cited By (5)

Motile curved bacteria are Pareto-optimal journal July 2019
Taxonomic use of DNA G+C content and DNA–DNA hybridization in the genomic age journal February 2014
Motile curved bacteria are Pareto-optimal journal January 2018
Exemplar Abstract for Thermanaerovibrio velox Zavarzina et al. 2000 emend. Palaniappan et al. 2013. dataset January 2013
Nomenclature Abstract for Thermanaerovibrio acidaminovorans (Guangsheng et al. 1997) Baena et al. 1999 emend. Palaniappan et al. 2013. dataset January 2013

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Related Subjects

60 APPLIED LIFE SCIENCES
59 BASIC BIOLOGICAL SCIENCES
obligate anaerobic
motile
curved rods
organotrophic
S0-reduction
cyanobacterial mat
Synergistaceae
Synergistetes
GEBA