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Title: Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1

Journal Article · · Scientific Reports
 [1];  [2];  [1];  [3];  [4];  [1];  [1];  [1];  [5]; ORCiD logo [6];  [7]; ORCiD logo [4];  [3]; ORCiD logo [8];  [9]; ORCiD logo [1]
  1. Univ. of Oslo (Norway). Dept. of Clinical Molecular Biology; Akershus Univ. Hospital, Lorenskog (Norway)
  2. Norwegian Univ. of Science and Technology, Trondheim (Norway); Liaison Committee for Education, Research and Innovation in Central Norway, Trondheim (Norway)
  3. Univ. of Oslo (Norway). Dept. of Informatics
  4. Medical Research Council (MRC), Cambridge (United Kingdom). Lab. of Molecular Biology (MRC-LMB)
  5. Univ. of Oslo (Norway). Dept. of Clinical Molecular Biology; Akershus Univ. Hospital, Lorenskog (Norway); LifeTechnologies AS, Oslo (Norway)
  6. Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Univ. of New Mexico Comprehensive Cancer Center, Albuquerque, NM (United States)
  7. Norwegian Univ. of Science and Technology, Trondheim (Norway
  8. Univ. of Oslo (Norway). Dept. of Informatics; Oslo University Hospital, Oslo (Norway). Dept. of Microbiology
  9. Norwegian Univ. of Science and Technology, Trondheim (Norway)

Both a DNA lesion and an intermediate for antibody maturation, uracil is primarily processed by base excision repair (BER), either initiated by uracil-DNA glycosylase (UNG) or by single-strand selective monofunctional uracil DNA glycosylase (SMUG1). The relative in vivo contributions of each glycosylase remain elusive. To assess the impact of SMUG1 deficiency, we measured uracil and 5-hydroxymethyluracil, another SMUG1 substrate, in Smug1-/- mice. Here, we found that 5-hydroxymethyluracil accumulated in Smug1-/- tissues and correlated with 5-hydroxymethylcytosine levels. The highest increase was found in brain, which contained about 26-fold higher genomic 5-hydroxymethyluracil levels than the wild type. Smug1-/- mice did not accumulate uracil in their genome and Ung-/- mice showed slightly elevated uracil levels. Contrastingly, Ung-/-Smug1-/- mice showed a synergistic increase in uracil levels with up to 25-fold higher uracil levels than wild type. Whole genome sequencing of UNG/SMUG1-deficient tumours revealed that combined UNG and SMUG1 deficiency leads to the accumulation of mutations, primarily C to T transitions within CpG sequences. This unexpected sequence bias suggests that CpG dinucleotides are intrinsically more mutation prone. In conclusion, we showed that SMUG1 efficiently prevent genomic uracil accumulation, even in the presence of UNG, and identified mutational signatures associated with combined UNG and SMUG1 deficiency.

Research Organization:
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
Sponsoring Organization:
USDOE National Nuclear Security Administration (NNSA); USDOE Laboratory Directed Research and Development (LDRD) Program; Norwegian Research Council; Norwegian Cancer Society; European Union (EU)
Grant/Contract Number:
AC52-06NA25396; 4501723–2013; 2014001; 609020
OSTI ID:
1392805
Report Number(s):
LA-UR-16-28917
Journal Information:
Scientific Reports, Vol. 7, Issue 1; ISSN 2045-2322
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 32 works
Citation information provided by
Web of Science

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Cited By (5)

Uracil–DNA glycosylase UNG1 isoform variant supports class switch recombination and repairs nuclear genomic uracil journal March 2019
A Tumor-Promoting Phorbol Ester Causes a Large Increase in APOBEC3A Expression and a Moderate Increase in APOBEC3B Expression in a Normal Human Keratinocyte Cell Line without Increasing Genomic Uracils journal October 2018
Portrait of a cancer: mutational signature analyses for cancer diagnostics journal May 2019
Telomere maintenance: regulating hTERC fate through RNA modifications journal October 2019
Integrative genomic analysis identifies associations of molecular alterations to APOBEC and BRCA1/2 mutational signatures in breast cancer journal June 2019

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