Alterations in the human gut microbiome associated with Helicobacter pylori infection
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journal
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August 2019 |
Linking stream microbial community functional genes to dissolved organic matter and inorganic nutrients
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journal
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January 2020 |
Comparative Metagenomics
|
book
|
December 2017 |
Genome sequences of two Antarctic strains of Pseudomonas prosekii: insights into adaptation to extreme conditions
|
journal
|
November 2019 |
A Physiological and Genomic Comparison of Nitrosomonas Cluster 6a and 7 Ammonia-Oxidizing Bacteria
|
journal
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April 2019 |
DNA-SIP based genome-centric metagenomics identifies key long-chain fatty acid-degrading populations in anaerobic digesters with different feeding frequencies
|
journal
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September 2017 |
Genome-resolved metagenomics identifies genetic mobility, metabolic interactions, and unexpected diversity in perchlorate-reducing communities
|
journal
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February 2018 |
Molecular evidence for novel mercury methylating microorganisms in sulfate-impacted lakes
|
journal
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February 2019 |
In situ transformation of ethoxylate and glycol surfactants by shale-colonizing microorganisms during hydraulic fracturing
|
journal
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June 2019 |
Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert
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journal
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July 2019 |
Herbivorous turtle ants obtain essential nutrients from a conserved nitrogen-recycling gut microbiome
|
journal
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March 2018 |
Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes
|
journal
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April 2018 |
Salvage of the 5-deoxyribose byproduct of radical SAM enzymes
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journal
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August 2018 |
Hidden diversity of soil giant viruses
|
journal
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November 2018 |
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria
|
journal
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January 2019 |
Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats
|
journal
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May 2018 |
Advances in protein structure prediction and design
|
journal
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August 2019 |
Giant virus diversity and host interactions through global metagenomics
|
journal
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January 2020 |
The genes of the sulphoquinovose catabolism in Escherichia coli are also associated with a previously unknown pathway of lactose degradation
|
journal
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February 2018 |
Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments
|
journal
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September 2018 |
Evolutionary history of carbon monoxide dehydrogenase/acetyl-CoA synthase, one of the oldest enzymatic complexes
|
journal
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January 2018 |
Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens
|
journal
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February 2019 |
Genomic metrics made easy: what to do and where to go in the new era of bacterial taxonomy
|
journal
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March 2019 |
DOOR: a prokaryotic operon database for genome analyses and functional inference
|
journal
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July 2017 |
MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)
|
journal
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November 2018 |
BacPaCS—Bacterial Pathogenicity Classification via Sparse-SVM
|
journal
|
November 2018 |
Ecogenomics reveals community interactions in a long-term methanogenic bioreactor and a rapid switch to sulfate-reducing conditions
|
journal
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March 2020 |
Course-based undergraduate research experiences in molecular biosciences—patterns, trends, and faculty support
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journal
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July 2017 |
HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes
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journal
|
February 2020 |
Bipartite graphs in systems biology and medicine: a survey of methods and applications
|
journal
|
February 2018 |
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
|
journal
|
October 2018 |
Genomes OnLine database (GOLD) v.7: updates and new features
|
journal
|
October 2018 |
Structural characterization of Class 2 OLD family nucleases supports a two-metal catalysis mechanism for cleavage
|
journal
|
August 2019 |
Rathayibacter oskolensis sp. nov., a novel actinobacterium from Androsace koso-poljanskii Ovcz. (Primulaceae) endemic to the Central Russian Upland
|
journal
|
May 2018 |
Polynucleobacter hirudinilacicola sp. nov. and Polynucleobacter campilacus sp. nov., both isolated from freshwater systems
|
journal
|
August 2018 |
Polynucleobacter paneuropaeus sp. nov., characterized by six strains isolated from freshwater lakes located along a 3000 km north–south cross-section across Europe
|
journal
|
January 2019 |
Emergence of trait variability through the lens of nitrogen assimilation in Prochlorococcus
|
journal
|
November 2018 |
Swimming motility and chemotaxis control the spatial organization, persistence, and inflammatory activity of a model intestinal pathobiont
|
posted_content
|
September 2019 |
Type 4 pili are dispensable for biofilm development in the cyanobacterium Synechococcus elongatus: Pili are dispensable for biofilm development
|
journal
|
July 2017 |
Genome biology of a novel lineage of planctomycetes widespread in anoxic aquatic environments
|
journal
|
July 2018 |
Comparison of sulfide‐oxidizing Sulfurimonas strains reveals a new mode of thiosulfate formation in subsurface environments
|
journal
|
January 2020 |
A microcin processing peptidase‐like protein of the cyanobacterium Synechococcus elongatus is essential for secretion of biofilm‐promoting proteins
|
journal
|
March 2019 |
Snf2 controls pulcherriminic acid biosynthesis and antifungal activity of the biocontrol yeast Metschnikowia pulcherrima
|
journal
|
April 2019 |
Giant viruses with an expanded complement of translation system components
|
journal
|
April 2017 |
Programmed DNA destruction by miniature CRISPR-Cas14 enzymes
|
journal
|
October 2018 |
Unveiling Concealed Functions of Endosymbiotic Bacteria Harbored in the Ascomycete Stachylidium bicolor
|
journal
|
June 2018 |
Engineered Root Bacteria Release Plant-Available Phosphate from Phytate
|
journal
|
July 2019 |
Species Deletions from Microbiome Consortia Reveal Key Metabolic Interactions between Gut Microbes
|
journal
|
July 2019 |
The MG-RAST API explorer: an on-ramp for RESTful query composition
|
journal
|
November 2019 |
Rational construction of genome-reduced and high-efficient industrial Streptomyces chassis based on multiple comparative genomic approaches
|
journal
|
January 2019 |
Genomic variation and biogeography of Antarctic haloarchaea
|
journal
|
June 2018 |
MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis
|
journal
|
September 2018 |
Diversity, evolution, and classification of virophages uncovered through global metagenomics
|
journal
|
December 2019 |
A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes
|
journal
|
June 2020 |
Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing
|
journal
|
September 2018 |
LurR is a regulator of the central lactate oxidation pathway in sulfate-reducing Desulfovibrio species
|
journal
|
April 2019 |
Comparative Metagenomics Analysis of palm oil mill Effluent (Pome) Using Three Different Bioinformatics Pipelines
|
journal
|
June 2019 |
In Silico Analysis of Putrefaction Pathways in Bacteria and Its Implication in Colorectal Cancer
|
journal
|
November 2017 |
Genome Sequencing and Comparative Analysis of Stenotrophomonas acidaminiphila Reveal Evolutionary Insights Into Sulfamethoxazole Resistance
|
journal
|
May 2018 |
Changes in Carbon Oxidation State of Metagenomes Along Geochemical Redox Gradients
|
journal
|
February 2019 |
Bacterial Metabolites Produced Under Iron Limitation Kill Pinewood Nematode and Attract Caenorhabditis elegans
|
journal
|
September 2019 |
Applying Genome-Resolved Metagenomics to Deconvolute the Halophilic Microbiome
|
journal
|
March 2019 |
Role of the Extremolytes Ectoine and Hydroxyectoine as Stress Protectants and Nutrients: Genetics, Phylogenomics, Biochemistry, and Structural Analysis
|
journal
|
March 2018 |
Metabolic Modeling of Human Gut Microbiota on a Genome Scale: An Overview
|
journal
|
January 2019 |
Coupled Biological and Abiotic Mechanisms Driving Carbonyl Sulfide Production in Soils
|
journal
|
June 2018 |
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
|
journal
|
June 2017 |
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
|
journal
|
March 2018 |
Carboxythiazole is a key microbial nutrient currency and critical component of thiamin biosynthesis
|
journal
|
April 2018 |
Genomic, metabolic and phenotypic variability shapes ecological differentiation and intraspecies interactions of Alteromonas macleodii
|
journal
|
January 2020 |
Organic sulfur fingerprint indicates continued injection fluid signature 10 months after hydraulic fracturing
|
journal
|
January 2019 |
The structure of the Thermococcus gammatolerans McrB N-terminal domain reveals a new mode of substrate recognition and specificity among McrB homologs
|
journal
|
December 2019 |
Current challenges and best-practice protocols for microbiome analysis
|
journal
|
December 2019 |
Comparative genomics of the genus Desulfitobacterium
|
journal
|
October 2017 |
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies
|
journal
|
October 2017 |
Elioraea thermophila sp. nov., a thermophilic bacterium from hot spring of the class Alphaproteobacteria, emended description of the genus Elioraea and proposal of Elioraeaceae fam. nov.
|
journal
|
February 2020 |
Metagenomic characterization of the viral community of the South Scotia Ridge
|
journal
|
October 2018 |
Genomes of rumen bacteria encode atypical pathways for fermenting hexoses to short-chain fatty acids: Atypical fermentation pathways
|
journal
|
November 2017 |
Bacterial nanocellulose production from naphthalene
|
journal
|
May 2019 |
The Polyextremophilic Bacterium Clostridium paradoxum Attains Piezophilic Traits by Modulating Its Energy Metabolism and Cell Membrane Composition
|
journal
|
August 2019 |
OpuF, a New Bacillus Compatible Solute ABC Transporter with a Substrate-Binding Protein Fused to the Transmembrane Domain
|
journal
|
October 2018 |
Comparative Genomics of Rumen Butyrivibrio spp. Uncovers a Continuum of Polysaccharide-Degrading Capabilities
|
journal
|
October 2019 |
Modernized Tools for Streamlined Genetic Manipulation and Comparative Study of Wild and Diverse Proteobacterial Lineages
|
journal
|
October 2018 |
Towards a balanced view of the bacterial tree of life
|
journal
|
October 2017 |
High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460
|
journal
|
July 2017 |
Members of Marinobacter and Arcobacter Influence System Biogeochemistry During Early Production of Hydraulically Fractured Natural Gas Wells in the Appalachian Basin
|
journal
|
November 2018 |
Complex general stress response regulation in Sphingomonas melonis Fr1 revealed by transcriptional analyses
|
text
|
January 2019 |
B ‐factor Guided Proline Substitutions in Chromobacterium violaceum Amine Transaminase: Evaluation of the Proline Rule as a Method for Enzyme Stabilization
|
journal
|
March 2019 |
Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
|
journal
|
July 2017 |
Murine colitis reveals a disease-associated bacteriophage community
|
journal
|
July 2018 |
Investigation of recombination-intense viral groups and their genes in the Earth’s virome
|
journal
|
July 2018 |
Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability
|
journal
|
October 2018 |
MG-RAST version 4—lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis
|
journal
|
September 2017 |
HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks
|
journal
|
January 2018 |
dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation
|
journal
|
October 2017 |
gcMeta: a Global Catalogue of Metagenomics platform to support the archiving, standardization and analysis of microbiome data
|
journal
|
October 2018 |
Integration of absolute multi-omics reveals translational and metabolic interplay in mixed-kingdom microbiomes
|
posted_content
|
November 2019 |
Shewanella khirikhana sp. nov. – a shrimp pathogen isolated from a cultivation pond exhibiting early mortality syndrome
|
journal
|
May 2020 |
Occurrence and diversity of the oxidative hydroxyhydroquinone pathway for the anaerobic degradation of aromatic compounds in nitrate‐reducing bacteria
|
journal
|
March 2019 |
Use of a Fluorescent Analog of Glucose (2-NBDG) To Identify Uncultured Rumen Bacteria That Take Up Glucose
|
journal
|
February 2019 |
Complete Genome Sequence of Thermoanaerobacterium sp. Strain RBIITD, a Butyrate- and Butanol-Producing Thermophile
|
journal
|
January 2018 |
Improved Draft Genome Sequence of Pseudomonas poae A2-S9, a Strain with Plant Growth-Promoting Activity
|
journal
|
April 2019 |
ZetaHunter, a Reproducible Taxonomic Classification Tool for Tracking the Ecology of the Zetaproteobacteria and Other Poorly Resolved Taxa
|
journal
|
August 2018 |
Complete Genome Sequence of Shewanella sp. Strain TH2012, Isolated from Shrimp in a Cultivation Pond Exhibiting Early Mortality Syndrome
|
journal
|
March 2019 |
Metagenomic Characterization of the Viral Community of the South Scotia Ridge
|
journal
|
October 2018 |
A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes
|
posted_content
|
June 2020 |
Co-Option and Detoxification of a Phage Lysin for Housekeeping Function
|
journal
|
January 2018 |
Comparative Pangenomics of the Mammalian Gut Commensal Bifidobacterium longum
|
journal
|
December 2019 |
Snf2 controls pulcherriminic acid biosynthesis and antifungal activity of the biocontrol yeast Metschnikowia pulcherrima
|
text
|
January 2019 |
A roadmap for global synthesis of the plant tree of life
|
journal
|
March 2018 |
Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere
|
journal
|
February 2019 |
Form III RubisCO-mediated transaldolase variant of the Calvin cycle in a chemolithoautotrophic bacterium
|
journal
|
August 2019 |
From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus
|
journal
|
July 2018 |
Co-option and Detoxification of a Phage Lysin for Housekeeping Function
|
journal
|
November 2018 |
Oral bacteriophages are maintained at high levels for months in individuals but infrequently transmitted between mothers and infants
|
posted_content
|
May 2019 |
Genome‐based evolutionary history of Pseudomonas spp
|
journal
|
June 2018 |
Depth distributions of nitrite reductase ( nirK ) gene variants reveal spatial dynamics of thaumarchaeal ecotype populations in coastal Monterey Bay
|
journal
|
August 2019 |
Variation and inheritance of the Xanthomonas raxX‐raxSTAB gene cluster required for activation of XA21‐mediated immunity
|
journal
|
February 2019 |
Genome-resolved metagenomics analysis provides insights into the ecological role of Thaumarchaeota in the Amazon River and its plume
|
journal
|
January 2020 |
Sugar Lego: gene composition of bacterial carbohydrate metabolism genomic loci
|
journal
|
November 2017 |
Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae
|
journal
|
December 2017 |
The trajectory of microbial single-cell sequencing
|
journal
|
October 2017 |
Biphasic cellular adaptations and ecological implications of Alteromonas macleodii degrading a mixture of algal polysaccharides
|
journal
|
August 2018 |
From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus
|
journal
|
October 2018 |
Complex general stress response regulation in Sphingomonas melonis Fr1 revealed by transcriptional analyses
|
journal
|
June 2019 |
The Fe(II)-oxidizing Zetaproteobacteria : historical, ecological and genomic perspectives
|
journal
|
January 2019 |
MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data
|
journal
|
April 2017 |
Leeuwenhoekiella aestuarii sp. nov., isolated from salt-water sediment and first insights in the genomes of Leeuwenhoekiella species
|
journal
|
March 2020 |
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data
|
journal
|
June 2020 |
Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems
|
journal
|
August 2018 |
Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies
|
journal
|
March 2018 |
Unexpected host dependency of Antarctic Nanohaloarchaeota
|
journal
|
June 2019 |
Cellular life from the three domains and viruses are transcriptionally active in a hypersaline desert community
|
journal
|
May 2020 |
Swimming Motility and Chemotaxis Control the Spatial Organization, Persistence, and Inflammatory Activity of a Model Intestinal Pathobiont
|
journal
|
January 2019 |
Genome Analysis of Vallitalea guaymasensis Strain L81 Isolated from a Deep-Sea Hydrothermal Vent System
|
journal
|
July 2018 |
Paenibacillus amylolyticus 27C64 has a diverse set of carbohydrate-active enzymes and complete pectin deconstruction system
|
journal
|
January 2019 |
Polyphyly in 16S rRNA-based LVTree Versus Monophyly in Whole-genome-based CVTree
|
journal
|
October 2018 |
Author Correction: Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria
|
journal
|
March 2019 |
The Thaumarchaeon N. gargensis carries functional bioABD genes and has a promiscuous E. coli ΔbioH-complementing esterase EstN1
|
journal
|
September 2018 |
Metagenomic insights into diazotrophic communities across Arctic glacier forefields
|
journal
|
June 2018 |
The MAR databases: development and implementation of databases specific for marine metagenomics
|
journal
|
November 2017 |
Interactive microbial distribution analysis using BioAtlas
|
journal
|
April 2017 |
IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
|
journal
|
November 2018 |
Polyphosphate-Accumulating Bacteria: Potential Contributors to Mineral Dissolution in the Oral Cavity
|
journal
|
April 2018 |
Draft Genome Sequences of Three Sub-Antarctic
Rhodococcus
spp., Including Two Novel Psychrophilic Genomospecies
|
journal
|
September 2017 |
Draft Genome Sequences of Two Novel Sub-Antarctic
Williamsia
Species
|
journal
|
October 2017 |
On the Origin of Reverse Transcriptase-Using CRISPR-Cas Systems and Their Hyperdiverse, Enigmatic Spacer Repertoires
|
journal
|
September 2017 |
Metagenomic mining pectinolytic microbes and enzymes from an apple pomace-adapted compost microbial community
|
journal
|
August 2017 |
Flexible metagenome analysis using the MGX framework
|
journal
|
April 2018 |
Genome sequences of lower Great Lakes Microcystis sp. reveal strain-specific genes that are present and expressed in western Lake Erie blooms
|
journal
|
October 2017 |
Beyond cells – The virome in the human holobiont
|
journal
|
September 2019 |
Cyberbiosecurity Challenges of Pathogen Genome Databases
|
journal
|
May 2019 |
An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs
|
journal
|
October 2019 |
Complete Genome Sequence of Vibrio campbellii LMB 29 Isolated from Red Drum with Four Native Megaplasmids
|
journal
|
October 2017 |
Chromobacterium violaceum Pathogenicity: Updates and Insights from Genome Sequencing of Novel Chromobacterium Species
|
journal
|
November 2017 |
Substrate Shift Reveals Roles for Members of Bacterial Consortia in Degradation of Plant Cell Wall Polymers
|
journal
|
March 2018 |
Genomic Insights Into Energy Metabolism of Carboxydocella thermautotrophica Coupling Hydrogenogenic CO Oxidation With the Reduction of Fe(III) Minerals
|
journal
|
August 2018 |
The GbsR Family of Transcriptional Regulators: Functional Characterization of the OpuAR Repressor
|
journal
|
October 2018 |
Phenotypic and Genomic Properties of a Novel Deep-Lineage Haloalkaliphilic Member of the Phylum Balneolaeota From Soda Lakes Possessing Na+-Translocating Proteorhodopsin
|
journal
|
November 2018 |
Comparative Genome Analysis of Lactococcus lactis Indicates Niche Adaptation and Resolves Genotype/Phenotype Disparity
|
journal
|
January 2019 |
A Comparison of Microbial Genome Web Portals
|
journal
|
February 2019 |
Comparative Genomic Analysis of Soil Dwelling Bacteria Utilizing a Combinational Codon Usage and Molecular Phylogenetic Approach Accentuating on Key Housekeeping Genes
|
journal
|
December 2019 |
The Pseudoalteromonas luteoviolacea L-amino Acid Oxidase with Antimicrobial Activity Is a Flavoenzyme
|
journal
|
December 2018 |
An Integrated Multi-Disciplinary Perspective for Addressing Challenges of the Human Gut Microbiome
|
journal
|
March 2020 |