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Title: Incorporating microbial dormancy dynamics into soil decomposition models to improve quantification of soil carbon dynamics of northern temperate forests

Journal Article · · Journal of Geophysical Research. Biogeosciences
DOI:https://doi.org/10.1002/2015JG003130· OSTI ID:1355881
 [1];  [2];  [3];  [4];  [5];  [1];  [6];  [7]
  1. Purdue Univ., West Lafayette, IN (United States). Dept. of Earth, Atmospheric, and Planetary Sciences
  2. Univ. of Georgia, Athens, GA (United States). Warnell School of Forestry and Natural Resources; Northeast Forestry Univ., Harbin (China). Center for Ecological Research
  3. Purdue Univ., West Lafayette, IN (United States). Dept. of Earth, Atmospheric, and Planetary Sciences; Purdue Univ., West Lafayette, IN (United States). Dept. of Agronomy
  4. U.S. Geological Survey, Menlo Park, CA (United States)
  5. Alaska Cooperative Fish and Wildlife Research Unit, U.S. Geological Survey, Univ. of Alaska, Fairbanks, AK (United States). U.S. Geological Survey, Alaska Cooperative Fish and Wildlife Research Unit
  6. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Climate Change Science Inst. and Environmental Sciences Division
  7. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Environmental Sciences Division

Soil carbon dynamics of terrestrial ecosystems play a significant role in the global carbon cycle. Microbial-based decomposition models have seen much growth recently for quantifying this role, yet dormancy as a common strategy used by microorganisms has not usually been represented and tested in these models against field observations. Here in this study we developed an explicit microbial-enzyme decomposition model and examined model performance with and without representation of microbial dormancy at six temperate forest sites of different forest types. We then extrapolated the model to global temperate forest ecosystems to investigate biogeochemical controls on soil heterotrophic respiration and microbial dormancy dynamics at different temporal-spatial scales. The dormancy model consistently produced better match with field-observed heterotrophic soil CO2 efflux (RH) than the no dormancy model. Our regional modeling results further indicated that models with dormancy were able to produce more realistic magnitude of microbial biomass (<2% of soil organic carbon) and soil RH (7.5 ± 2.4 PgCyr-1). Spatial correlation analysis showed that soil organic carbon content was the dominating factor (correlation coefficient = 0.4-0.6) in the simulated spatial pattern of soil RH with both models. In contrast to strong temporal and local controls of soil temperature and moisture on microbial dormancy, our modeling results showed that soil carbon-to-nitrogen ratio (C:N) was a major regulating factor at regional scales (correlation coefficient = -0.43 to -0.58), indicating scale-dependent biogeochemical controls on microbial dynamics. Our findings suggest that incorporating microbial dormancy could improve the realism of microbial-based decomposition models and enhance the integration of soil experiments and mechanistically based modeling.

Research Organization:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE; National Science Foundation (NSF); National Aeronautics and Space Administration (NASA)
DOE Contract Number:
AC05-00OR22725; FG02-08ER64599; NSF-1028291; NSF-0630319; DEB-#0919331; NASA-NNX09AI26G
OSTI ID:
1355881
Journal Information:
Journal of Geophysical Research. Biogeosciences, Vol. 120, Issue 12; ISSN 2169-8953
Publisher:
American Geophysical Union
Country of Publication:
United States
Language:
English

References (43)

A global soil data set for earth system modeling journal March 2014
A global analysis of soil microbial biomass carbon, nitrogen and phosphorus in terrestrial ecosystems: Global soil microbial biomass C, N and P journal December 2012
Global soil carbon projections are improved by modelling microbial processes journal July 2013
The Global Stoichiometry of Litter Nitrogen Mineralization journal August 2008
Contrasting soil respiration in young and old-growth ponderosa pine forests journal December 2002
Reconciling the temperature dependence of respiration across timescales and ecosystem types journal June 2012
Representation of Dormant and Active Microbial Dynamics for Ecosystem Modeling journal February 2014
The responses of soil and rhizosphere respiration to simulated climatic changes vary by season journal February 2013
Accelerated microbial turnover but constant growth efficiency with warming in soil journal September 2014
Soil carbon sensitivity to temperature and carbon use efficiency compared across microbial-ecosystem models of varying complexity journal January 2014
Sequential density fractionation across soils of contrasting mineralogy: evidence for both microbial- and mineral-controlled soil organic matter stabilization journal August 2009
Control of biogeochemical cycling by mobility and metabolic strategies of microbes in the sediments: an integrated model study journal December 2003
Optimal use of the SCE-UA global optimization method for calibrating watershed models journal June 1994
Development of scale-free climate data for Western Canada for use in resource management journal January 2006
The Michaelis-Menten kinetics of soil extracellular enzymes in response to temperature: a cross-latitudinal study journal January 2012
Causes of variation in soil carbon simulations from CMIP5 Earth system models and comparison with observations journal January 2013
The implications of exoenzyme activity on microbial carbon and nitrogen limitation in soil: a theoretical model journal April 2003
Soil-atmospheric exchange of CO2, CH4, and N2O in three subtropical forest ecosystems in southern China journal March 2006
Seasonal hydrology explains interannual and seasonal variation in carbon and water exchange in a semiarid mature ponderosa pine forest in central Oregon journal January 2009
Active microorganisms in soil: Critical review of estimation criteria and approaches journal December 2013
Comparison of soil organic matter dynamics at five temperate deciduous forests with physical fractionation and radiocarbon measurements journal May 2012
Effects of drying–rewetting frequency on soil carbon and nitrogen transformations journal June 2002
A global relationship between the heterotrophic and autotrophic components of soil respiration? journal October 2004
Comparison of Unimodal Analytical Expressions for the Soil-Water Retention Curve journal January 2005
Microbial seed banks: the ecological and evolutionary implications of dormancy journal January 2011
Separation of net ecosystem exchange into assimilation and respiration using a light response curve approach: critical issues and global evaluation: SEPARATION OF NEE INTO GPP AND RECO journal January 2010
Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups journal June 2012
The effect of vertically resolved soil biogeochemistry and alternate soil C and N models on C dynamics of CLM4 journal January 2013
Soil-carbon response to warming dependent on microbial physiology journal April 2010
Separating root and soil microbial contributions to soil respiration: A review of methods and observations journal January 2000
Global patterns of carbon dioxide emissions from soils journal March 1995
The Vertical Distribution of soil Organic Carbon and its Relation to Climate and Vegetation journal April 2000
Microbial dormancy in batch cultures as a function of substrate-dependent mortality journal January 2012
The implications of microbial and substrate limitation for the fates of carbon in different organic soil horizon types of boreal forest ecosystems: a mechanistically based model analysis journal January 2014
Soil respiration in six temperate forests in China journal November 2006
How soil moisture, rain pulses, and growth alter the response of ecosystem respiration to temperature: RAIN, GROWTH, AND RESPIRATION journal October 2004
Surface and subsurface microbial biomass, community structure and metabolic activity as a function of soil depth and season journal June 2002
The Dual Arrhenius and Michaelis-Menten kinetics model for decomposition of soil organic matter at hourly to seasonal time scales journal October 2011
Carbon use efficiency of microbial communities: stoichiometry, methodology and modelling journal April 2013
Uncertainty in the fate of soil organic carbon: A comparison of three conceptually different decomposition models at a larch plantation: Q10 and microbial soil model journal September 2014
Drought-Induced Reduction in Global Terrestrial Net Primary Production from 2000 Through 2009 journal August 2010
Substrate and environmental controls on microbial assimilation of soil organic carbon: a framework for Earth system models journal February 2014
Oscillatory behavior of two nonlinear microbial models of soil carbon decomposition journal January 2014