Accurate read-based metagenome characterization using a hierarchical suite of unique signatures
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March 2015 |
RNA-seq based identification and mutant validation of gene targets related to ethanol resistance in cyanobacterial Synechocystis sp. PCC 6803
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January 2012 |
Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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April 2016 |
IMG/M 4 version of the integrated metagenome comparative analysis system
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October 2013 |
Ralstonia pickettii—innocent bystander or a potential threat?
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February 2006 |
Versatile and open software for comparing large genomes
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January 2004 |
Next-generation sequencing diagnostics of bacteremia in septic patients
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July 2016 |
GenePattern 2.0
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May 2006 |
Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
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October 2011 |
RATT: Rapid Annotation Transfer Tool
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February 2011 |
Novel Bacteriophages Containing a Genome of Another Bacteriophage within Their Genomes
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July 2012 |
Basic Local Alignment Search Tool
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October 1990 |
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June 2004 |
Next generation sequencing technology: Advances and applications
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October 2014 |
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
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March 2010 |
Comparative Genomics of Saccharomyces cerevisiae Natural Isolates for Bioenergy Production
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September 2014 |
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
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November 2014 |
Pneumonic Plague Cluster, Uganda, 2004
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March 2006 |
Genomic characterization of the Yersinia genus
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January 2010 |
Primer3—new capabilities and interfaces
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June 2012 |
Interactive metagenomic visualization in a Web browser
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September 2011 |
Kraken: ultrafast metagenomic sequence classification using exact alignments
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January 2014 |
Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species: TABLE 1
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April 2015 |
The microbiome of New World vultures
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November 2014 |
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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January 2014 |
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
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April 2012 |
Prokka: rapid prokaryotic genome annotation
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March 2014 |
Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences
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October 2006 |
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
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May 2012 |
Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae
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September 2014 |
Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists
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January 2010 |
JBrowse: A next-generation genome browser
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July 2009 |
Next-generation sequencing: a challenge to meet the increasing demand for training workshops in Australia
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March 2013 |
Automated ensemble assembly and validation of microbial genomes
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May 2014 |
PATRIC, the bacterial bioinformatics database and analysis resource
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November 2013 |
Fast gapped-read alignment with Bowtie 2
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March 2012 |
Rapid Whole-Genome Sequencing for Surveillance of Salmonella enterica Serovar Enteritidis
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August 2014 |
jsPhyloSVG: A Javascript Library for Visualizing Interactive and Vector-Based Phylogenetic Trees on the Web
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August 2010 |
DNA sequencing with chain-terminating inhibitors
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December 1977 |
Bacterial Pathogens in the Nasopharynx, Nasal Cavity, and Osteomeatal Complex during Wellness and Viral Infection
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January 2013 |
Genome sequencing in microfabricated high-density picolitre reactors
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July 2005 |
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
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November 2013 |
Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry
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April 2009 |
Metagenomic microbial community profiling using unique clade-specific marker genes
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June 2012 |
A new method for sequencing DNA.
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February 1977 |
Understanding the limitations of next generation sequencing informatics, an approach to clinical pipeline validation using artificial data sets
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December 2013 |
Rapid evaluation and quality control of next generation sequencing data with FaQCs
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November 2014 |
Bacillus weihenstephanensis characteristics are present in Bacillus cereus and Bacillus mycoides strains
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March 2013 |
DNA extraction approaches substantially influence the assessment of the human breast milk microbiome
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January 2020 |
Chemogenomic profiling of breast cancer patient-derived xenografts reveals targetable vulnerabilities for difficult-to-treat tumors
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June 2020 |
Automated ensemble assembly and validation of microbial genomes
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February 2014 |
Draft Genome Sequence of Comamonas aquatilis Strain LK (= CSUR P6418 = CECT 9772), Isolated from the Planarian Schmidtea mediterranea
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February 2021 |
Draft Genome Sequence of Medusavirus Stheno, Isolated from the Tatakai River of Uji, Japan
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January 2021 |
An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities.
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text
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January 2021 |
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses.
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text
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January 2014 |
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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text
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January 2014 |
Automated ensemble assembly and validation of microbial genomes
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text
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January 2014 |
Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis , Y. pseudotuberculosis , and Y. enterocolitica : TABLE 1
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April 2015 |
New method for plague surveillance using polymerase chain reaction to detect Yersinia pestis in fleas.
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January 1993 |
PCR Assay To Detect Bacillus anthracis Spores in Heat-Treated Specimens
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February 2003 |
Analysis of the Upper Respiratory Tract Microbiotas as the Source of the Lung and Gastric Microbiotas in Healthy Individuals
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March 2015 |