Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2T

Berben, Tom; Sorokin, Dimitry Y.; Ivanova, Natalia; Pati, Amrita; Kyrpides, Nikos; Goodwin, Lynne A.; Woyke, Tanja; Muyzer, Gerard

doi:10.1186/s40793-015-0078-x

Title: Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2^T

Journal Article · Mon Oct 26 00:00:00 EDT 2015 · Standards in Genomic Sciences

DOI:https://doi.org/10.1186/s40793-015-0078-x· OSTI ID:1323183

Berben, Tom ^[1]; Sorokin, Dimitry Y. ^[2]; Ivanova, Natalia ^[3]; Pati, Amrita ^[3]; Kyrpides, Nikos ^[3]; Goodwin, Lynne A. ^[3]; Woyke, Tanja ^[3];

^[1]

Univ. of Amsterdam, Amsterdam (The Netherlands)
Winogradsky Institute of Microbiology, RAS, Moscow (Russia); Delft Univ. of Technology, Delft (The Netherlands)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)

Â© 2015 Berben et al. Thioalkalivibrio thiocyanoxidans strain ARh 2 T is a sulfur-oxidizing bacterium isolated from haloalkaline soda lakes. It is a motile, Gram-negative member of the Gammaproteobacteria. Remarkable properties include the ability to grow on thiocyanate as the sole energy, sulfur and nitrogen source, and the capability of growth at salinities of up to 4.3 M total Na + . This draft genome sequence consists of 61 scaffolds comprising 2,765,337 bp, and contains 2616 protein-coding and 61 RNA-coding genes. This organism was sequenced as part of the Community Science Program of the DOE Joint Genome Institute.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1323183

Alternate ID(s):: OSTI ID: 1378605

Journal Information:: Standards in Genomic Sciences, Vol. 10, Issue 1; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 3 works

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Cited By (3)

Analysis of the Genes Involved in Thiocyanate Oxidation during Growth in Continuous Culture of the Haloalkaliphilic Sulfur-Oxidizing Bacterium Thioalkalivibrio thiocyanoxidans ARh 2T Using Transcriptomics Berben, Tom; Balkema, Cherel; Sorokin, Dimitry Y. mSystems, Vol. 2, Issue 6 https://doi.org/10.1128/msystems.00102-17	journal	December 2017
Comparative Genome Analysis of Three Thiocyanate Oxidizing Thioalkalivibrio Species Isolated from Soda Lakes Berben, Tom; Overmars, Lex; Sorokin, Dimitry Y. Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.00254	journal	February 2017
Transcriptomic Analysis of Two Thioalkalivibrio Species Under Arsenite Stress Revealed a Potential Candidate Gene for an Alternative Arsenite Oxidation Pathway Ahn, Anne-Catherine; Cavalca, Lucia; Colombo, Milena Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.01514	journal	July 2019

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59 BASIC BIOLOGICAL SCIENCES
haloalkaliphilic
Soda lakes
sulfur-oxidizing bacteria
Thiocyanate
sp-nov

Title: Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2T

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Title: Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2^T