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Title: High-quality draft genome sequence of Gracilimonas tropica CL-CB462T (DSM 19535T), isolated from a Synechococcus culture

Journal Article · · Standards in Genomic Sciences
 [1];  [1];  [1];  [2];  [3];  [3];  [3];  [4];  [3];  [5];  [6];  [7];  [7];  [3];  [8];  [9];  [1]
  1. Seoul National Univ. (Korea, Republic of)
  2. St. Petersburg State Univ., St. Petersburg (Russia); St. Petersburg Academic Univ., St. Petersburg, (Russia)
  3. DOE Joint Genome Institute, Walnut Creek, CA (United States). Genome Biology Program
  4. St. Petersburg Academic Univ., St. Petersburg, (Russia)
  5. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  6. HZI - Helmholtz Centre for Infection Research, Braunschweig (Germany). Central Facility for Microscopy
  7. Leibniz Institute DSMZ, Braunschweig (Germany)
  8. Leibniz Institute DSMZ, Braunschweig (Germany); Newcastle Univ., Newcastle upon Tyne (United Kingdom)
  9. DOE Joint Genome Institute, Walnut Creek, CA (United States). Genome Biology Program; King Abdulaziz Univ., Jeddah (Saudi Arabia)
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© 2015 Choi et al. Gracilimonas tropica Choi et al. 2009 is a member of order Sphingobacteriales, class Sphingobacteriia. Three species of the genus Gracilimonas have been isolated from marine seawater or a salt mine and showed extremely halotolerant and mesophilic features, although close relatives are extremely halophilic or thermophilic. The type strain of the type species of Gracilimonas, G. tropica DSM19535 T , was isolated from a Synechococcus culture which was established from the tropical sea-surface water of the Pacific Ocean. The genome of the strain DSM19535 T was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes project. Here, we describe the genomic features of the strain. The 3,831,242 bp long draft genome consists of 48 contigs with 3373 protein-coding and 53 RNA genes. The strain seems to adapt to phosphate limitation and requires amino acids from external environment. In addition, genomic analyses and pasteurization experiment suggested that G. tropica DSM19535 T did not form spore.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1256942
Alternate ID(s):
OSTI ID: 1378642
Journal Information:
Standards in Genomic Sciences, Vol. 10, Issue 1; ISSN 1944-3277
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 1 work
Citation information provided by
Web of Science

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Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica journal October 2017

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Genome
Gracilimonas tropica
Marine
Sphingobacteriia
GEBA