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Title: High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland

Abstract

We report that Rhizobium leguminosarum bv. viciae GB30 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Pisum sativum. GB30 was isolated in Poland from a nodule recovered from the roots of Pisum sativum growing at Janow. GB30 is also an effective microsymbiont of the annual forage legumes vetch and pea. Here we describe the features of R. leguminosarum bv. viciae strain GB30, together with sequence and annotation. The 7,468,464 bp high-quality permanent draft genome is arranged in 78 scaffolds of 78 contigs containing 7,227 protein-coding genes and 75 RNA-only encoding genes, and is part of the GEBA-RNB project proposal.

Authors:
 [1];  [2];  [2];  [1];  [1];  [3];  [3];  [4];  [3];  [3];  [3];  [5];  [2]
  1. Maria Curie-Sklodowska Univ., Lublin (Poland)
  2. Murdoch Univ., (Western Australia)
  3. DOE Joint Genome Inst., Walnut Creek, CA (United States)
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  5. DOE Joint Genome Inst., Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1256927
Grant/Contract Number:  
AC02-05CH11231; AC52-07NA27344; AC02-06NA25396
Resource Type:
Journal Article: Accepted Manuscript
Journal Name:
Standards in Genomic Sciences
Additional Journal Information:
Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 1944-3277
Publisher:
BioMed Central
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Root-nodule bacteria; Nitrogen fixation; Rhizobia; Alphaproteobacteria; GEBA-RNB

Citation Formats

Mazur, Andrzej, De Meyer, Sofie E., Tian, Rui, Wielbo, Jerzy, Zebracki, Kamil, Seshadri, Rekha, Reddy, T. B.K., Markowitz, Victor, Ivanova, Natalia N., Pati, Amrita, Woyke, Tanja, Kyrpides, Nikos C., and Reeve, Wayne. High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland. United States: N. p., 2015. Web. doi:10.1186/s40793-015-0029-6.
Mazur, Andrzej, De Meyer, Sofie E., Tian, Rui, Wielbo, Jerzy, Zebracki, Kamil, Seshadri, Rekha, Reddy, T. B.K., Markowitz, Victor, Ivanova, Natalia N., Pati, Amrita, Woyke, Tanja, Kyrpides, Nikos C., & Reeve, Wayne. High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland. United States. https://doi.org/10.1186/s40793-015-0029-6
Mazur, Andrzej, De Meyer, Sofie E., Tian, Rui, Wielbo, Jerzy, Zebracki, Kamil, Seshadri, Rekha, Reddy, T. B.K., Markowitz, Victor, Ivanova, Natalia N., Pati, Amrita, Woyke, Tanja, Kyrpides, Nikos C., and Reeve, Wayne. 2015. "High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland". United States. https://doi.org/10.1186/s40793-015-0029-6. https://www.osti.gov/servlets/purl/1256927.
@article{osti_1256927,
title = {High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland},
author = {Mazur, Andrzej and De Meyer, Sofie E. and Tian, Rui and Wielbo, Jerzy and Zebracki, Kamil and Seshadri, Rekha and Reddy, T. B.K. and Markowitz, Victor and Ivanova, Natalia N. and Pati, Amrita and Woyke, Tanja and Kyrpides, Nikos C. and Reeve, Wayne},
abstractNote = {We report that Rhizobium leguminosarum bv. viciae GB30 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Pisum sativum. GB30 was isolated in Poland from a nodule recovered from the roots of Pisum sativum growing at Janow. GB30 is also an effective microsymbiont of the annual forage legumes vetch and pea. Here we describe the features of R. leguminosarum bv. viciae strain GB30, together with sequence and annotation. The 7,468,464 bp high-quality permanent draft genome is arranged in 78 scaffolds of 78 contigs containing 7,227 protein-coding genes and 75 RNA-only encoding genes, and is part of the GEBA-RNB project proposal.},
doi = {10.1186/s40793-015-0029-6},
url = {https://www.osti.gov/biblio/1256927}, journal = {Standards in Genomic Sciences},
issn = {1944-3277},
number = 1,
volume = 10,
place = {United States},
year = {Thu Jul 16 00:00:00 EDT 2015},
month = {Thu Jul 16 00:00:00 EDT 2015}
}

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Works referencing / citing this record:

Structural and functional organization of the plasmid regulons of Rhizobium leguminosarum symbiotic genes
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