Near-complete genome sequence of the cellulolytic Bacterium Bacteroides (Pseudobacteroides) cellulosolvens ATCC 35603

Dassa, Bareket; Utturkar, Sagar M.; Hurt, Richard A.; Klingeman, Dawn Marie; Keller, Martin; Xu, Jian; Reddy, Harish Kumar; Borovok, Ilya; Grinberg, Inna Rozman; Lamed, Raphael; Zhivin, Olga; Bayer, Edward A.; Brown, Steven D.

doi:10.1128/genomeA.01022-15

Title: Near-complete genome sequence of the cellulolytic Bacterium Bacteroides (Pseudobacteroides) cellulosolvens ATCC 35603

Journal Article · Thu Sep 24 00:00:00 EDT 2015 · Genome Announcements

DOI:https://doi.org/10.1128/genomeA.01022-15· OSTI ID:1221737

Dassa, Bareket ^[1]; Utturkar, Sagar M. ^[2]; Hurt, Richard A. ^[3]; Klingeman, Dawn Marie ^[3]; Keller, Martin ^[3]; Xu, Jian ^[4]; Reddy, Harish Kumar ^[5]; Borovok, Ilya ^[5]; Grinberg, Inna Rozman ^[5]; Lamed, Raphael ^[5]; Zhivin, Olga ^[1]; Bayer, Edward A. ^[1]; Brown, Steven D. ^[6]

Weizmann Institute of Science, Rehovot (Israel)
Univ. of Tennessee, Knoxville, TN (United States); BioEnergy Science Center, Oak Ridge, TN (United States)
BioEnergy Science Center, Oak Ridge, TN (United States); Oak Ridge National Lab., Oak Ridge, TN (United States)
Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao (China)
Tel Aviv Univ., Ramat Aviv (Israel)
Univ. of Tennessee, Knoxville, TN (United States); BioEnergy Science Center, Oak Ridge, TN (United States); Oak Ridge National Lab., Oak Ridge, TN (United States)

We report the single-contig genome sequence of the anaerobic, mesophilic, cellulolytic bacterium, Bacteroides cellulosolvens. The bacterium produces a particularly elaborate cellulosome system, whereas the types of cohesin-dockerin interactions are opposite of other known cellulosome systems: cell-surface attachment is thus mediated via type-I interactions whereas enzymes are integrated via type-II interactions.

View Accepted Manuscript (DOE)

Cite

Export

Save

Research Organization:: Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). BioEnergy Science Center (BESC)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC05-00OR22725

OSTI ID:: 1221737

Journal Information:: Genome Announcements, Vol. 3, Issue 5; ISSN 2169-8287

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (27)

The Cellulosomes: Multienzyme Machines for Degradation of Plant Cell Wall Polysaccharides Bayer, Edward A.; Belaich, Jean-Pierre; Shoham, Yuval Annual Review of Microbiology, Vol. 58, Issue 1 https://doi.org/10.1146/annurev.micro.57.030502.091022	journal	October 2004
Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum De León, Kara B.; Utturkar, Sagar M.; Camilleri, Laura B. Genome Announcements, Vol. 3, Issue 5 https://doi.org/10.1128/genomeA.01090-15	journal	September 2015
Acetivibrio cellulolyticus and Bacteroides cellulosolvens are members of the greater clostridial assemblage Lin, Chuzhao; Urbance, John W.; Stahl, David A. FEMS Microbiology Letters, Vol. 124, Issue 2 https://doi.org/10.1111/j.1574-6968.1994.tb07277.x	journal	December 1994
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data Kearse, M.; Moir, R.; Wilson, A. Bioinformatics, Vol. 28, Issue 12 https://doi.org/10.1093/bioinformatics/bts199	journal	April 2012
A Scaffoldin of the Bacteroides cellulosolvens Cellulosome That Contains 11 Type II Cohesins Ding, S. -Y.; Bayer, E. A.; Steiner, D. Journal of Bacteriology, Vol. 182, Issue 17 https://doi.org/10.1128/JB.182.17.4915-4925.2000	journal	September 2000
Localization of the cellulase activity of Bacteroides cellulosolvens Murray, W. D.; Sowden, L. C.; Colvin, J. R. Letters in Applied Microbiology, Vol. 3, Issue 3 https://doi.org/10.1111/j.1472-765X.1986.tb01550.x	journal	March 1986
Increased cellulose hydrolysis by Bacteroides cellulosolvens in a simplified synthetic medium Murray, William D. Journal of Biotechnology, Vol. 3, Issue 3 https://doi.org/10.1016/0168-1656(85)90014-8	journal	December 1985
Cohesin-dockerin microarray: Diverse specificities between two complementary families of interacting protein modules Haimovitz, Rachel; Barak, Yoav; Morag, Ely PROTEOMICS, Vol. 8, Issue 5 https://doi.org/10.1002/pmic.200700486	journal	March 2008
Carbohydrate-binding modules: fine-tuning polysaccharide recognition Boraston, Alisdair B.; Bolam, David N.; Gilbert, Harry J. Biochemical Journal, Vol. 382, Issue 3 https://doi.org/10.1042/BJ20040892	journal	September 2004
A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia: Genomics update Yutin, Natalya; Galperin, Michael Y. Environmental Microbiology https://doi.org/10.1111/1462-2920.12173	journal	July 2013
Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences Utturkar, Sagar M.; Klingeman, Dawn M.; Land, Miriam L. Bioinformatics, Vol. 30, Issue 19 https://doi.org/10.1093/bioinformatics/btu391	journal	June 2014
Cellulase and Sugar Formation by Bacteroides cellulosolvens, a Newly Isolated Cellulolytic Anaerobe † Giuliano, Christine; Khan, A. W. Applied and Environmental Microbiology, Vol. 48, Issue 2 https://doi.org/10.1128/AEM.48.2.446-448.1984	journal	January 1984
Cellulosome-like entities inBacteroides cellulosolvens Lamed, Raphael; Morag (Morgenstern), Ely; Mor-Yosef, Orly Current Microbiology, Vol. 22, Issue 1 https://doi.org/10.1007/BF02106209	journal	January 1991
Crystal Structure of a Type-II Cohesin Module from the Bacteroides cellulosolvens Cellulosome Reveals Novel and Distinctive Secondary Structural Elements Noach, Ilit; Frolow, Felix; Jakoby, Hilla Journal of Molecular Biology, Vol. 348, Issue 1 https://doi.org/10.1016/j.jmb.2005.02.024	journal	April 2005
From cellulosomes to cellulosomics Bayer, Edward A.; Lamed, Raphael; White, Bryan A. The Chemical Record, Vol. 8, Issue 6, p. 364-377 https://doi.org/10.1002/tcr.20160	journal	January 2008
Architecture of the Bacteroides cellulosolvens Cellulosome: Description of a Cell Surface-Anchoring Scaffoldin and a Family 48 Cellulase Xu, Q.; Bayer, E. A.; Goldman, M. Journal of Bacteriology, Vol. 186, Issue 4 https://doi.org/10.1128/JB.186.4.968-977.2004	journal	February 2004
Prodigal: prokaryotic gene recognition and translation initiation site identification Hyatt, Doug; Chen, Gwo-Liang; LoCascio, Philip F. BMC Bioinformatics, Vol. 11, Issue 1 https://doi.org/10.1186/1471-2105-11-119	journal	March 2010
Conversion of cellulose to sugars by resting cells of a mesophilic anaerobe,Bacteriodes cellulosolvens Giuliano, Christine; Khan, A. W. Biotechnology and Bioengineering, Vol. 27, Issue 7 https://doi.org/10.1002/bit.260270708	journal	July 1985
The cellulosome — A treasure-trove for biotechnology Bayer, Edward A.; Morag, Ely; Lamed, Raphael Trends in Biotechnology, Vol. 12, Issue 9 https://doi.org/10.1016/0167-7799(94)90039-6	journal	September 1994
Description of Anaerobacterium chartisolvens gen. nov., sp. nov., an obligately anaerobic bacterium from Clostridium rRNA cluster III isolated from soil of a Japanese rice field, and reclassification of Bacteroides cellulosolvens Murray et al. 1984 as Pseudobacteroides cellulosolvens gen. nov., comb. nov. Horino, H.; Fujita, T.; Tonouchi, A. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 4 https://doi.org/10.1099/ijs.0.059378-0	journal	January 2014
Cellulosomes: Highly Efficient Nanomachines Designed to Deconstruct Plant Cell Wall Complex Carbohydrates Fontes, Carlos M. G. A.; Gilbert, Harry J. Annual Review of Biochemistry, Vol. 79, Issue 1 https://doi.org/10.1146/annurev-biochem-091208-085603	journal	June 2010
Combined Crystal Structure of a Type I Cohesin: MUTATION AND AFFINITY BINDING STUDIES REVEAL STRUCTURAL DETERMINANTS OF COHESIN-DOCKERIN SPECIFICITIES Cameron, Kate; Weinstein, Jonathan Y.; Zhivin, Olga Journal of Biological Chemistry, Vol. 290, Issue 26 https://doi.org/10.1074/jbc.M115.653303	journal	May 2015
Draft Genome Sequence of the Lignin-Degrading Burkholderia sp. Strain LIG30, Isolated from Wet Tropical Forest Soil Woo, H. L.; Utturkar, S.; Klingeman, D. Genome Announcements, Vol. 2, Issue 3 https://doi.org/10.1128/genomeA.00637-14	journal	May 2014
Symbiotic Relationship of Bacteroides cellulosolvens and Clostridium saccharolyticum in Cellulose Fermentation† Murray, William D. Applied and Environmental Microbiology, Vol. 51, Issue 4 https://doi.org/10.1128/AEM.51.4.710-714.1986	journal	January 1986
Bacteroides cellulosolvens sp. nov., a Cellulolytic Species from Sewage Sludge Murray, W. D.; Sowden, L. C.; Colvin, J. R. International Journal of Systematic Bacteriology, Vol. 34, Issue 2 https://doi.org/10.1099/00207713-34-2-185	journal	April 1984
Isolation and properties of a major cellobiohydrolase from the cellulosome of Clostridium thermocellum. Morag, E.; Halevy, I.; Bayer, E. A. Journal of Bacteriology, Vol. 173, Issue 13 https://doi.org/10.1128/jb.173.13.4155-4162.1991	journal	July 1991
Specialized cell surface structures in cellulolytic bacteria. Lamed, R.; Naimark, J.; Morgenstern, E. Journal of Bacteriology, Vol. 169, Issue 8 https://doi.org/10.1128/jb.169.8.3792-3800.1987	journal	August 1987

Cited By (3)

Unraveling essential cellulosomal components of the (Pseudo)Bacteroides cellulosolvens reveals an extensive reservoir of novel catalytic enzymes Zhivin-Nissan, Olga; Dassa, Bareket; Morag, Ely Biotechnology for Biofuels, Vol. 12, Issue 1 https://doi.org/10.1186/s13068-019-1447-2	journal	May 2019
Unique organization and unprecedented diversity of the Bacteroides (Pseudobacteroides) cellulosolvens cellulosome system Zhivin, Olga; Dassa, Bareket; Moraïs, Sarah Biotechnology for Biofuels, Vol. 10, Issue 1 https://doi.org/10.1186/s13068-017-0898-6	journal	September 2017
A Case Study into Microbial Genome Assembly Gap Sequences and Finishing Strategies Utturkar, Sagar M.; Klingeman, Dawn M.; Hurt, Richard A. Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.01272	journal	July 2017

Similar Records

Unique organization and unprecedented diversity of the Bacteroides (Pseudobacteroides) cellulosolvens cellulosome system

Journal Article · Thu Sep 07 00:00:00 EDT 2017 · Biotechnology for Biofuels · OSTI ID:1221737

Zhivin, Olga; Dassa, Bareket; Moraïs, Sarah; +5 more

Creation of a functional hyperthermostable designer cellulosome

Journal Article · Thu Feb 28 00:00:00 EST 2019 · Biotechnology for Biofuels · OSTI ID:1221737

Kahn, Amaranta; Moraïs, Sarah; Galanopoulou, Anastasia P.; +7 more

Cellulase and sugar formation by Bacteroides cellulosolvens, a newly isolated cellulolytic anaerobe

Journal Article · Wed Aug 01 00:00:00 EDT 1984 · Appl. Environ. Microbiol.; (United States) · OSTI ID:1221737

Giuliano, C; Khan, A W

Related Subjects

59 BASIC BIOLOGICAL SCIENCES

Title: Near-complete genome sequence of the cellulolytic Bacterium Bacteroides (Pseudobacteroides) cellulosolvens ATCC 35603

Citation Formats

References (27)

Cited By (3)

Similar Records

Related Subjects