Hyperspectral image reconstruction for x-ray fluorescence tomography

Gürsoy, Doǧa; Biçer, Tekin; Lanzirotti, Antonio; Newville, Matthew G.; De Carlo, Francesco

doi:10.1364/OE.23.009014

Title: Hyperspectral image reconstruction for x-ray fluorescence tomography

Journal Article · Thu Jan 01 00:00:00 EST 2015 · Optics Express

DOI:https://doi.org/10.1364/OE.23.009014· OSTI ID:1200860

Gürsoy, Doǧa ^[1]; Biçer, Tekin ^[2]; Lanzirotti, Antonio ^[3]; Newville, Matthew G. ^[3]; De Carlo, Francesco ^[1]

Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source
Argonne National Lab. (ANL), Argonne, IL (United States). Mathematics and Computer Science Div.
Univ. of Chicago, Chicago, IL (United States). Center for Advanced Radiation Sources

A penalized maximum-likelihood estimation is proposed to perform hyperspectral (spatio-spectral) image reconstruction for X-ray fluorescence tomography. The approach minimizes a Poisson-based negative log-likelihood of the observed photon counts, and uses a penalty term that has the effect of encouraging local continuity of model parameter estimates in both spatial and spectral dimensions simultaneously. The performance of the reconstruction method is demonstrated with experimental data acquired from a seed of arabidopsis thaliana collected at the 13-ID-E microprobe beamline at the Advanced Photon Source. The resulting element distribution estimates with the proposed approach show significantly better reconstruction quality than the conventional analytical inversion approaches, and allows for a high data compression factor which can reduce data acquisition times remarkably. In particular, this technique provides the capability to tomographically reconstruct full energy dispersive spectra without compromising reconstruction artifacts that impact the interpretation of results.

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Research Organization:: Argonne National Lab. (ANL), Argonne, IL (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC02-06CH11357; FG02-94ER14466; EAR1128799

OSTI ID:: 1200860

Journal Information:: Optics Express, Vol. 23, Issue 7; ISSN 1094-4087

Publisher:: Optical Society of America (OSA)Copyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 27 works

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References (27)

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2016 Atomic Spectrometry Update – a review of advances in X-ray fluorescence spectrometry and its applications West, Margaret; Ellis, Andrew T.; Potts, Philip J. Journal of Analytical Atomic Spectrometry, Vol. 31, Issue 9 https://doi.org/10.1039/c6ja90034h	journal	January 2016
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Joint reconstruction of x-ray fluorescence and transmission tomography Di, Zichao Wendy; Chen, Si; Hong, Young Pyo Optics Express, Vol. 25, Issue 12 https://doi.org/10.1364/oe.25.013107	journal	January 2017
Optimization-based simultaneous alignment and reconstruction in multi-element tomography Di, Zichao (Wendy); Chen, Si; Gursoy, Doga Optics Letters, Vol. 44, Issue 17 https://doi.org/10.1364/ol.44.004331	journal	January 2019

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