Methylocystis strain SB2 materials and methods

Semrau, Jeremy D; Gallagher, Warren; Yoon, Sukhwan; Im, Jeongdae; DiSpririto, Alan A; Lee, Sung-Woo; Hartsel, Scott; McEllistrem, Marcus T

Title: Methylocystis strain SB2 materials and methods

Patent · Tue Jan 14 00:00:00 EST 2014

OSTI ID:1117663

Semrau, Jeremy D; Gallagher, Warren; Yoon, Sukhwan; Im, Jeongdae; DiSpririto, Alan A; Lee, Sung-Woo; Hartsel, Scott; McEllistrem, Marcus T

The present disclosures provides isolated or purified compounds, each of which bind to a metal atom. Generally, the compounds are small in size (e.g., molecular weight of less than about 1 kDa) and peptidic in nature, inasmuch as the compounds comprise amino acids. In some embodiments, the compound comprises a structure of Formula I; M.sub.1-P.sub.1-M.sub.2-P.sub.2 wherein each of P.sub.1 and P.sub.2 is a peptide comprising at least two amino acids, M.sub.1 is a first metal binding moiety comprising a substituted imidazolone ring, M.sub.2 is a second metal binding moiety comprising a substituted oxazolone ring, and wherein M.sub.1 and M.sub.2 bind to a single metal atom. Also provided are related complexes, conjugates, cells which synthesize the compounds of the present disclosures, substantially homogenous cultures thereof, kits and compositions, and methods of making or using the materials of the present disclosures.

View Patent

Cite

Export

Save

Research Organization:: Iowa State University Research Foundation, Inc. (Ames, IA)

Sponsoring Organization:: USDOE

DOE Contract Number:: FC26-05NT42431

Assignee:: Iowa State University Research Foundation, Inc. (Ames, IA); The Regents of the University of Michigan (Ann Arbor, MI); WiSys Technology Foundation (Madison, WI)

Patent Number(s):: 8,629,239

Application Number:: 13/198,669

OSTI ID:: 1117663

Resource Relation:: Patent File Date: 2011 Aug 04

Country of Publication:: United States

Language:: English

References (44)

NMR, Mass Spectrometry and Chemical Evidence Reveal a Different Chemical Structure for Methanobactin That Contains Oxazolone Rings Behling, Lee A.; Hartsel, Scott C.; Lewis, David E. Journal of the American Chemical Society, Vol. 130, Issue 38 https://doi.org/10.1021/ja804747d	journal	September 2008
Spectral and thermodynamic properties of Ag(I), Au(III), Cd(II), Co(II), Fe(III), Hg(II), Mn(II), Ni(II), Pb(II), U(IV), and Zn(II) binding by methanobactin from Methylosinus trichosporium OB3b Choi, Dong W.; Do, Young S.; Zea, Corbin J. Journal of Inorganic Biochemistry, Vol. 100, Issue 12, p. 2150-2161 https://doi.org/10.1016/j.jinorgbio.2006.08.017	journal	December 2006
Molecular Characterization of Methanotrophic Isolates from Freshwater Lake Sediment Auman, A. J.; Stolyar, S.; Costello, A. M. Applied and Environmental Microbiology, Vol. 66, Issue 12 https://doi.org/10.1128/AEM.66.12.5259-5266.2000	journal	December 2000
Transport of lactate and acetate through the energized cytoplasmic membrane of Escherichia coli Axe, Douglas D.; Bailey, James E. Biotechnology and Bioengineering, Vol. 47, Issue 1, p. 8-19 https://doi.org/10.1002/bit.260470103	journal	July 1995
Acetate utilization as a survival strategy of peat-inhabiting Methylocystis spp.: Acetate utilization by Methylocystis spp. Belova, Svetlana E.; Baani, Mohamed; Suzina, Natalia E. Environmental Microbiology Reports, Vol. 3, Issue 1 https://doi.org/10.1111/j.1758-2229.2010.00180.x	journal	February 2011
Methane-oxidizing Activity and Membrane Morphology in a Methanolgrown Obligate Methanotroph, Methylosinus trichosporium OB3b Best, D. J.; Higgins, I. J. Microbiology, Vol. 125, Issue 1 https://doi.org/10.1099/00221287-125-1-73	journal	July 1981
Revised Taxonomy of the Methanotrophs: Description of Methylobacter gen. nov., Emendation of Methylococcus, Validation of Methylosinus and Methylocystis Species, and a Proposal that the Family Methylococcaceae Includes Only the Group I Methanotrophs Bowman, J. P.; Sly, L. I.; Nichols, P. D. International Journal of Systematic Bacteriology, Vol. 43, Issue 4 https://doi.org/10.1099/00207713-43-4-735	journal	October 1993
Optimization of trichloroethylene oxidation by methanotrophs and the use of a colorimetric assay to detect soluble methane monooxygenase activity Brusseau, Gregory A.; Tsien, Hsien-Chyang; Hanson, Richard S. Biodegradation, Vol. 1, Issue 1 https://doi.org/10.1007/BF00117048	journal	January 1990
A rapid method for the base ratio determination of bacterial DNA Cashion, P.; Holder-Franklin, M. A.; McCully, J. Analytical Biochemistry, Vol. 81, Issue 2, p. 461-466 https://doi.org/10.1016/0003-2697(77)90720-5	journal	August 1977
The Membrane-Associated Methane Monooxygenase (pMMO) and pMMO-NADH:Quinone Oxidoreductase Complex from Methylococcus capsulatus Bath Choi, Dong-W.; Kunz, Ryan C.; Boyd, Eric S. Journal of Bacteriology, Vol. 185, Issue 19 https://doi.org/10.1128/JB.185.19.5755-5764.2003	journal	September 2003
In vivo 13C NMR Investigations of Methanol Oxidation by the Obligate Methanotroph Methylosinus trichosporium OB3b Cornish, A.; Nicholls, K. M.; Scott, D. Microbiology, Vol. 130, Issue 10 https://doi.org/10.1099/00221287-130-10-2565	journal	October 1984
Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine-pathway methanotrophs Dedysh, S. N.; Liesack, W.; Khmelenina, V. N. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 50, Issue 3 https://doi.org/10.1099/00207713-50-3-955	journal	May 2000
Methylocella Species Are Facultatively Methanotrophic Dedysh, S. N.; Knief, C.; Dunfield, P. F. Journal of Bacteriology, Vol. 187, Issue 13 https://doi.org/10.1128/JB.187.13.4665-4670.2005	journal	June 2005
Methylocella silvestris sp. nov., a novel methanotroph isolated from an acidic forest cambisol Dunfield, P. F. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 53, Issue 5 https://doi.org/10.1099/ijs.0.02481-0	journal	September 2003
Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia Dunfield, Peter F.; Yuryev, Anton; Senin, Pavel Nature, Vol. 450, Issue 7171 https://doi.org/10.1038/nature06411	journal	November 2007
Quantification of gene expression in methanotrophs by competitive reverse transcription-polymerase chain reaction: Quantification of gene expression in methanotrophs Han, Jong-In; Semrau, Jeremy D. Environmental Microbiology, Vol. 6, Issue 4 https://doi.org/10.1111/j.1462-2920.2004.00572.x	journal	February 2004
Analysis of methanotrophic bacteria in Movile Cave by stable isotope probing: Methanotrophs in Movile Cave Hutchens, Elena; Radajewski, Stefan; Dumont, Marc G. Environmental Microbiology, Vol. 6, Issue 2 https://doi.org/10.1046/j.1462-2920.2003.00543.x	journal	December 2003
Characterization of a novel facultative Methylocystis species capable of growth on methane, acetate and ethanol: Facultative methanotrophy in a Methylocystis sp. Im, Jeongdae; Lee, Sung-Woo; Yoon, Sukhwan Environmental Microbiology Reports, Vol. 3, Issue 2 https://doi.org/10.1111/j.1758-2229.2010.00204.x	journal	August 2010
Methane oxidation at 55 C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum Islam, T.; Jensen, S.; Reigstad, L. J. Proceedings of the National Academy of Sciences, Vol. 105, Issue 1, p. 300-304 https://doi.org/10.1073/pnas.0704162105	journal	January 2008
Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 Laemmli, U. K. Nature, Vol. 227, Issue 5259, p. 680-685 https://doi.org/10.1038/227680a0	journal	August 1970
Growth yields of methanotrophs: 1. Effect of copper on the energetics of methane oxidation Leak, David J.; Dalton, Howard Applied Microbiology and Biotechnology, Vol. 23, Issue 6 https://doi.org/10.1007/BF02346062	journal	March 1986
Mixed Pollutant Degradation by Methylosinus trichosporium OB3b Expressing either Soluble or Particulate Methane Monooxygenase: Can the Tortoise Beat the Hare? Lee, S. -W.; Keeney, D. R.; Lim, D. -H. Applied and Environmental Microbiology, Vol. 72, Issue 12 https://doi.org/10.1128/AEM.01604-06	journal	September 2006
Growth of the methane utilising bacterium Methylococcus NCIB 11083 in mineral salts medium with methanol as the sole source of carbon Linton, J. D.; Vokes, J. FEMS Microbiology Letters, Vol. 4, Issue 3 https://doi.org/10.1111/j.1574-6968.1978.tb02847.x	journal	September 1978
Precise Measurement of the G+C Content of Deoxyribonucleic Acid by High-Performance Liquid Chromatography Mesbah, M.; Premachandran, U.; Whitman, W. B. International Journal of Systematic Bacteriology, Vol. 39, Issue 2 https://doi.org/10.1099/00207713-39-2-159	journal	April 1989
Effect of Copper Speciation on Whole-Cell Soluble Methane Monooxygenase Activity in Methylosinus trichosporium OB3b Morton, J. D.; Hayes, K. F.; Semrau, J. D. Applied and Environmental Microbiology, Vol. 66, Issue 4 https://doi.org/10.1128/AEM.66.4.1730-1733.2000	journal	April 2000
Regulation of expression of methane monooxygenases by copper ions Murrell, J. Colin; McDonald, Ian R.; Gilbert, Bettina Trends in Microbiology, Vol. 8, Issue 5, p. 221-225 https://doi.org/10.1016/S0966-842X(00)01739-X	journal	May 2000
Copper-dependent reciprocal transcriptional regulation of methane monooxygenase genes in Methylococcus capsulatus and Methylosinus trichosporium Nielsen, Allan K.; Gerdes, Kenn; Murrell, J. Colin Molecular Microbiology, Vol. 25, Issue 02 https://doi.org/10.1046/j.1365-2958.1997.4801846.x	journal	July 1997
Methanotrophy below pH 1 by a new Verrucomicrobia species Pol, Arjan; Heijmans, Klaas; Harhangi, Harry R. Nature, Vol. 450, Issue 7171 https://doi.org/10.1038/nature06222	journal	November 2007
Transcription of nitrification genes by the methane-oxidizing bacterium, Methylococcus capsulatus strain Bath Poret-Peterson, Amisha T.; Graham, James E.; Gulledge, Jay The ISME Journal, Vol. 2, Issue 12 https://doi.org/10.1038/ismej.2008.71	journal	July 2008
The Effect of Copper Ions on Membrane Content and Methane Monooxygenase Activity in Methanol-grown Cells of Methylococcus capsulatus (Bath) Prior, S. D.; Dalton, H. Microbiology, Vol. 131, Issue 1 https://doi.org/10.1099/00221287-131-1-155	journal	January 1985
The neighbor-joining method: a new method for reconstructing phylogenetic trees. Saitou, N.; Nei, M. Molecular Biology and Evolution, Vol. 4, Issue 4, p. 406-425 https://doi.org/10.1093/oxfordjournals.molbev.a040454	journal	July 1987
Attenuation of Methane and Volatile Organic Compounds in Landfill Soil Covers Scheutz, Charlotte; Mosbæk, Hans; Kjeldsen, Peter Journal of Environment Quality, Vol. 33, Issue 1 https://doi.org/10.2134/jeq2004.6100	journal	January 2004
A Field Evaluation of In-Situ Biodegradation of Chlorinated Ethenes: Part 2, Results of Biostimulation and Biotransformation Experiments Semprini, Lewis; Roberts, Paul V.; Hopkins, Gary D. Ground Water, Vol. 28, Issue 5 https://doi.org/10.1111/j.1745-6584.1990.tb01987.x	journal	September 1990
Methanotrophs and copper Semrau, Jeremy D.; DiSpirito, Alan A.; Yoon, Sukhwan FEMS Microbiology Reviews, Vol. 34, Issue 4 https://doi.org/10.1111/j.1574-6976.2010.00212.x	journal	July 2010
Determination of DNA base composition by reversed-phase high-performance liquid chromatography Tamaoka, Jin; Komagata, Kazuo FEMS Microbiology Letters, Vol. 25, Issue 1, p. 125-128 https://doi.org/10.1111/j.1574-6968.1984.tb01388.x	journal	November 1984
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0 Tamura, K.; Dudley, J.; Nei, M. Molecular Biology and Evolution, Vol. 24, Issue 8 https://doi.org/10.1093/molbev/msm092	journal	April 2007
Methylocystis rosea sp. nov., a novel methanotrophic bacterium from Arctic wetland soil, Svalbard, Norway (78 N) Wartiainen, I. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 3 https://doi.org/10.1099/ijs.0.63912-0	journal	March 2006
Report of the Ad Hoc Committee on Reconciliation of Approaches to Bacterial Systematics Moore, W. E. C.; Stackebrandt, E.; Kandler, O. International Journal of Systematic and Evolutionary Microbiology, Vol. 37, Issue 4 https://doi.org/10.1099/00207713-37-4-463	journal	October 1987
Enrichment, Isolation and Some Properties of Methane-utilizing Bacteria Whittenbury, R.; Phillips, K. C.; Wilkinson, J. F. Journal of General Microbiology, Vol. 61, Issue 2 https://doi.org/10.1099/00221287-61-2-205	journal	May 1970
Interactions in a mixed bacterial population growing on methane in continuous culture Wilkinson, T. G.; Topiwala, H. H.; Hamer, G. Biotechnology and Bioengineering, Vol. 16, Issue 1 https://doi.org/10.1002/bit.260160105	journal	January 1974
Measurement and modeling of multiple substrate oxidation by methanotrophs at 20°C Yoon, Sukhwan; Semrau, Jeremy D. FEMS Microbiology Letters, Vol. 287, Issue 2, p. 156-162 https://doi.org/10.1111/j.1574-6968.2008.01314.x	journal	October 2008
An assay for screening microbial cultures for chalkophore production Yoon, Sukhwan; Kraemer, Stephan M.; DiSpirito, Alan A. Environmental Microbiology Reports, Vol. 2, Issue 2 https://doi.org/10.1111/j.1758-2229.2009.00125.x	journal	April 2010
A Comparison of Methanobactins from Methylosinus trichosporium OB3b and Methylocystis Strain SB2 Predicts Methanobactins Are Synthesized from Diverse Peptide Precursors Modified To Create a Common Core for Binding and Reducing Copper Ions Krentz, Benjamin D.; Mulheron, Heidi J.; Semrau, Jeremy D. Biochemistry, Vol. 49, Issue 47 https://doi.org/10.1021/bi1014375	journal	November 2010
Pollutant degradation by a Methylocystis strain SB2 grown on ethanol: bioremediation via facultative methanotrophy: Bioremediation via facultative methanotrophy Im, Jeongdae; Semrau, Jeremy D. FEMS Microbiology Letters, Vol. 318, Issue 2 https://doi.org/10.1111/j.1574-6968.2011.02249.x	journal	March 2011

Similar Records

Crystal structure of MbnF: an NADPH-dependent flavin monooxygenase from Methylocystis strain SB2

Journal Article · Fri May 05 00:00:00 EDT 2023 · Acta Crystallographica. Section F, Structural Biology Communications · OSTI ID:1117663

Stewart, Andrew; Dershwitz, Philip; Stewart, Jr, Charles; +6 more

Methanobactin and the Link between Copper and Bacterial Methane Oxidation

Journal Article · Wed Mar 16 00:00:00 EDT 2016 · Microbiology and Molecular Biology Reviews · OSTI ID:1117663

DiSpirito, Alan A.; Semrau, Jeremy D.; Murrell, J. Colin; +3 more

Fuel additives derived from amido-amines

Patent · Tue Aug 24 00:00:00 EDT 1993 · OSTI ID:1117663

Gutierrez, A; Lundberg, R D

Related Subjects

59 BASIC BIOLOGICAL SCIENCES

Title: Methylocystis strain SB2 materials and methods

Citation Formats

References (44)

Similar Records

Related Subjects