Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2T
Abstract
© 2015 Berben et al. Thioalkalivibrio thiocyanoxidans strain ARh 2 T is a sulfur-oxidizing bacterium isolated from haloalkaline soda lakes. It is a motile, Gram-negative member of the Gammaproteobacteria. Remarkable properties include the ability to grow on thiocyanate as the sole energy, sulfur and nitrogen source, and the capability of growth at salinities of up to 4.3 M total Na + . This draft genome sequence consists of 61 scaffolds comprising 2,765,337 bp, and contains 2616 protein-coding and 61 RNA-coding genes. This organism was sequenced as part of the Community Science Program of the DOE Joint Genome Institute.
- Authors:
-
- Univ. of Amsterdam, Amsterdam (The Netherlands)
- Winogradsky Institute of Microbiology, RAS, Moscow (Russia); Delft Univ. of Technology, Delft (The Netherlands)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1323183
- Alternate Identifier(s):
- OSTI ID: 1378605
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Journal Article: Accepted Manuscript
- Journal Name:
- Standards in Genomic Sciences
- Additional Journal Information:
- Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 1944-3277
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; haloalkaliphilic; Soda lakes; sulfur-oxidizing bacteria; Thiocyanate; sp-nov
Citation Formats
Berben, Tom, Sorokin, Dimitry Y., Ivanova, Natalia, Pati, Amrita, Kyrpides, Nikos, Goodwin, Lynne A., Woyke, Tanja, and Muyzer, Gerard. Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2T. United States: N. p., 2015.
Web. doi:10.1186/s40793-015-0078-x.
Berben, Tom, Sorokin, Dimitry Y., Ivanova, Natalia, Pati, Amrita, Kyrpides, Nikos, Goodwin, Lynne A., Woyke, Tanja, & Muyzer, Gerard. Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2T. United States. https://doi.org/10.1186/s40793-015-0078-x
Berben, Tom, Sorokin, Dimitry Y., Ivanova, Natalia, Pati, Amrita, Kyrpides, Nikos, Goodwin, Lynne A., Woyke, Tanja, and Muyzer, Gerard. 2015.
"Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2T". United States. https://doi.org/10.1186/s40793-015-0078-x. https://www.osti.gov/servlets/purl/1323183.
@article{osti_1323183,
title = {Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2T},
author = {Berben, Tom and Sorokin, Dimitry Y. and Ivanova, Natalia and Pati, Amrita and Kyrpides, Nikos and Goodwin, Lynne A. and Woyke, Tanja and Muyzer, Gerard},
abstractNote = {© 2015 Berben et al. Thioalkalivibrio thiocyanoxidans strain ARh 2 T is a sulfur-oxidizing bacterium isolated from haloalkaline soda lakes. It is a motile, Gram-negative member of the Gammaproteobacteria. Remarkable properties include the ability to grow on thiocyanate as the sole energy, sulfur and nitrogen source, and the capability of growth at salinities of up to 4.3 M total Na + . This draft genome sequence consists of 61 scaffolds comprising 2,765,337 bp, and contains 2616 protein-coding and 61 RNA-coding genes. This organism was sequenced as part of the Community Science Program of the DOE Joint Genome Institute.},
doi = {10.1186/s40793-015-0078-x},
url = {https://www.osti.gov/biblio/1323183},
journal = {Standards in Genomic Sciences},
issn = {1944-3277},
number = 1,
volume = 10,
place = {United States},
year = {Mon Oct 26 00:00:00 EDT 2015},
month = {Mon Oct 26 00:00:00 EDT 2015}
}
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Thioalkalivibrio thiocyanoxidans sp. nov. and Thioalkalivibrio paradoxus sp. nov., novel alkaliphilic, obligately autotrophic, sulfur-oxidizing bacteria capable of growth on thiocyanate, from soda lakes.
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Works referencing / citing this record:
Analysis of the Genes Involved in Thiocyanate Oxidation during Growth in Continuous Culture of the Haloalkaliphilic Sulfur-Oxidizing Bacterium Thioalkalivibrio thiocyanoxidans ARh 2T Using Transcriptomics
journal, December 2017
- Berben, Tom; Balkema, Cherel; Sorokin, Dimitry Y.
- mSystems, Vol. 2, Issue 6
Comparative Genome Analysis of Three Thiocyanate Oxidizing Thioalkalivibrio Species Isolated from Soda Lakes
journal, February 2017
- Berben, Tom; Overmars, Lex; Sorokin, Dimitry Y.
- Frontiers in Microbiology, Vol. 8
Transcriptomic Analysis of Two Thioalkalivibrio Species Under Arsenite Stress Revealed a Potential Candidate Gene for an Alternative Arsenite Oxidation Pathway
journal, July 2019
- Ahn, Anne-Catherine; Cavalca, Lucia; Colombo, Milena
- Frontiers in Microbiology, Vol. 10
Comparative Genome Analysis of Three Thiocyanate Oxidizing Thioalkalivibrio Species Isolated from Soda Lakes
journal, February 2017
- Berben, Tom; Overmars, Lex; Sorokin, Dimitry Y.
- Frontiers in Microbiology, Vol. 8