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Title: Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species

Abstract

In 2011, the Association of Analytical Communities (AOAC) International released a list of Bacillus strains relevant to biothreat molecular detection assays. Presented in this document are the complete and annotated genome assemblies for the 15 strains listed on the inclusivity panel, as well as the 20 strains listed on the exclusivity panel.

Authors:
ORCiD logo [1];  [1];  [1];  [2];  [3];  [4];  [5];  [3];  [1];  [5];  [2];  [1];  [1];  [1];  [4];  [5];  [4];  [3];  [2];  [1]
  1. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  2. United States Army Medical Research Institute of Infectious Diseases (USAMRIID), Fort Detrick, Maryland (United States). Diagnostic Systems Division (DSD)
  3. Naval Medical Research Center (NMRC)–Frederick, Fort Detrick, Maryland (United States); Henry M. Jackson Foundation, Bethesda, Maryland (United States)
  4. United States Army Medical Research Institute of Infectious Diseases (USAMRIID), Fort Detrick, Maryland (United States). Center for Genome Sciences (CGS)
  5. United States Army Edgewood Chemical Biological Center (ECBC), Aberdeen Proving Ground, Aberdeen, Maryland (United States)
Publication Date:
Research Org.:
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1221141
Report Number(s):
LA-UR-14-29604
Journal ID: ISSN 2169-8287
Grant/Contract Number:  
AC52-06NA25396
Resource Type:
Journal Article: Accepted Manuscript
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Volume: 3; Journal Issue: 2; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Johnson, Shannon L., Daligault, Hajnalka E., Davenport, Karen W., Jaissle, James, Frey, Kenneth G., Ladner, Jason T., Broomall, Stacey M., Bishop-Lilly, Kimberly A., Bruce, David C., Gibbons, Henry S., Coyne, Susan R., Lo, Chien-Chi, Meincke, Linda, Munk, A. Christine, Koroleva, Galina I., Rosenzweig, C. Nicole, Palacios, Gustavo F., Redden, Cassie L., Minogue, Timothy D., and Chain, Patrick S. Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species. United States: N. p., 2015. Web. doi:10.1128/genomeA.00151-15.
Johnson, Shannon L., Daligault, Hajnalka E., Davenport, Karen W., Jaissle, James, Frey, Kenneth G., Ladner, Jason T., Broomall, Stacey M., Bishop-Lilly, Kimberly A., Bruce, David C., Gibbons, Henry S., Coyne, Susan R., Lo, Chien-Chi, Meincke, Linda, Munk, A. Christine, Koroleva, Galina I., Rosenzweig, C. Nicole, Palacios, Gustavo F., Redden, Cassie L., Minogue, Timothy D., & Chain, Patrick S. Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species. United States. https://doi.org/10.1128/genomeA.00151-15
Johnson, Shannon L., Daligault, Hajnalka E., Davenport, Karen W., Jaissle, James, Frey, Kenneth G., Ladner, Jason T., Broomall, Stacey M., Bishop-Lilly, Kimberly A., Bruce, David C., Gibbons, Henry S., Coyne, Susan R., Lo, Chien-Chi, Meincke, Linda, Munk, A. Christine, Koroleva, Galina I., Rosenzweig, C. Nicole, Palacios, Gustavo F., Redden, Cassie L., Minogue, Timothy D., and Chain, Patrick S. 2015. "Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species". United States. https://doi.org/10.1128/genomeA.00151-15. https://www.osti.gov/servlets/purl/1221141.
@article{osti_1221141,
title = {Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species},
author = {Johnson, Shannon L. and Daligault, Hajnalka E. and Davenport, Karen W. and Jaissle, James and Frey, Kenneth G. and Ladner, Jason T. and Broomall, Stacey M. and Bishop-Lilly, Kimberly A. and Bruce, David C. and Gibbons, Henry S. and Coyne, Susan R. and Lo, Chien-Chi and Meincke, Linda and Munk, A. Christine and Koroleva, Galina I. and Rosenzweig, C. Nicole and Palacios, Gustavo F. and Redden, Cassie L. and Minogue, Timothy D. and Chain, Patrick S.},
abstractNote = {In 2011, the Association of Analytical Communities (AOAC) International released a list of Bacillus strains relevant to biothreat molecular detection assays. Presented in this document are the complete and annotated genome assemblies for the 15 strains listed on the inclusivity panel, as well as the 20 strains listed on the exclusivity panel.},
doi = {10.1128/genomeA.00151-15},
url = {https://www.osti.gov/biblio/1221141}, journal = {Genome Announcements},
issn = {2169-8287},
number = 2,
volume = 3,
place = {United States},
year = {Thu Apr 30 00:00:00 EDT 2015},
month = {Thu Apr 30 00:00:00 EDT 2015}
}

Works referenced in this record:

An Ergatis-based prokaryotic genome annotation web server
journal, March 2010


Surface Sampling Methods for Bacillus anthracis Spore Contamination
journal, October 2002


A rapid and repeatable method to deposit bioaerosols on material surfaces
journal, March 2013


Genome Project Standards in a New Era of Sequencing
journal, October 2009


ALLPATHS: De novo assembly of whole-genome shotgun microreads
journal, February 2008


Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
journal, May 2013


Base-Calling of Automated Sequencer Traces Using Phred.  I. Accuracy Assessment
journal, March 1998


Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities
journal, March 1998


Consed: A Graphical Tool for Sequence Finishing
journal, March 1998


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