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Title: Genome-Based Metabolic Mapping and 13C Flux Analysis Reveal Systematic Properties of an Oleaginous Microalga Chlorella protothecoides

Journal Article · · Plant Physiology (Bethesda)
 [1];  [1];  [1];  [1]
  1. Tsinghua Univ., Beijing (China). Ministry of Education Key Lab. of Bioinformatics; National Renewable Energy Lab. (NREL), Golden, CO (United States). Biosciences Center

We report that integrated and genome-based flux balance analysis, metabolomics, and 13C-label profiling of phototrophic and heterotrophic metabolism in Chlorella protothecoides, an oleaginous green alga for biofuel. The green alga Chlorella protothecoides, capable of autotrophic and heterotrophic growth with rapid lipid synthesis, is a promising candidate for biofuel production. Based on the newly available genome knowledge of the alga, we reconstructed the compartmentalized metabolic network consisting of 272 metabolic reactions, 270 enzymes, and 461 encoding genes and simulated the growth in different cultivation conditions with flux balance analysis. Phenotype-phase plane analysis shows conditions achieving theoretical maximum of the biomass and corresponding fatty acid-producing rate for phototrophic cells (the ratio of photon uptake rate to CO2 uptake rate equals 8.4) and heterotrophic ones (the glucose uptake rate to O2 consumption rate reaches 2.4), respectively. Isotope-assisted liquid chromatography-mass spectrometry/mass spectrometry reveals higher metabolite concentrations in the glycolytic pathway and the tricarboxylic acid cycle in heterotrophic cells compared with autotrophic cells. We also observed enhanced levels of ATP, nicotinamide adenine dinucleotide (phosphate), reduced, acetyl-Coenzyme A, and malonyl-Coenzyme A in heterotrophic cells consistently, consistent with a strong activity of lipid synthesis. To profile the flux map in experimental conditions, we applied nonstationary 13C metabolic flux analysis as a complementing strategy to flux balance analysis. We found that the result reveals negligible photorespiratory fluxes and a metabolically low active tricarboxylic acid cycle in phototrophic C. protothecoides. In comparison, high throughput of amphibolic reactions and the tricarboxylic acid cycle with no glyoxylate shunt activities were measured for heterotrophic cells. Lastly, taken together, the metabolic network modeling assisted by experimental metabolomics and 13C labeling better our understanding on global metabolism of oleaginous alga, paving the way to the systematic engineering of the microalga for biofuel production.

Research Organization:
National Renewable Energy Laboratory (NREL), Golden, CO (United States)
Sponsoring Organization:
NREL Director's Postdoc Fellowship; National Natural Science Foundation of China (NSFC)
Grant/Contract Number:
AC36-08GO28308; 31370282; 41030210; 2012Z08128
OSTI ID:
1220638
Report Number(s):
NREL/JA-2700-63117
Journal Information:
Plant Physiology (Bethesda), Vol. 167, Issue 2; ISSN 0032-0889
Publisher:
American Society of Plant BiologistsCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 71 works
Citation information provided by
Web of Science

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Metabolic flux analysis of heterotrophic growth in Chlamydomonas reinhardtii journal May 2017
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13C metabolic flux analysis on roles of malate transporter in lipid accumulation of Mucor circinelloides journal September 2019
A kinetic metabolic study of lipid production in Chlorella protothecoides under heterotrophic condition journal June 2019
Algal Cell Factories: Approaches, Applications, and Potentials journal December 2016
Parallel isotope differential modeling for instationary 13C fluxomics at the genome scale journal June 2020
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Improvements in algal lipid production: a systems biology and gene editing approach journal August 2017
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An improved method for extraction of polar and charged metabolites from cyanobacteria journal October 2018
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