Protein Kinase Inhibitors: Insights into Drug Design from Structure
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March 2004 |
Predicting Kinase Selectivity Profiles Using Free-Wilson QSAR Analysis
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August 2008 |
Attacking cancer at its foundation
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October 2009 |
c-Src Binds to the Cancer Drug Imatinib with an Inactive Abl/c-Kit Conformation and a Distributed Thermodynamic Penalty
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March 2007 |
Equally Potent Inhibition of c-Src and Abl by Compounds that Recognize Inactive Kinase Conformations
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March 2009 |
The development of imatinib as a therapeutic agent for chronic myeloid leukemia
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April 2005 |
Explaining why Gleevec is a specific and potent inhibitor of Abl kinase
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January 2013 |
Structural Mechanism for STI-571 Inhibition of Abelson Tyrosine Kinase
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September 2000 |
The Different Flexibility of c-Src and c-Abl Kinases Regulates the Accessibility of a Druggable Inactive Conformation
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January 2012 |
Small Molecule Recognition of c-Src via the Imatinib-Binding Conformation
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October 2008 |
Molecular Dynamics Simulations Show That Conformational Selection Governs the Binding Preferences of Imatinib for Several Tyrosine Kinases
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March 2010 |
Molecular Recognition of Protein Kinase Binding Pockets for Design of Potent and Selective Kinase Inhibitors
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February 2007 |
Understanding the Impact of the P-loop Conformation on Kinase Selectivity
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May 2011 |
Efficient computation of absolute free energies of binding by computer simulations. Application to the methane dimer in water
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September 1988 |
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins †
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April 1998 |
Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations
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August 2004 |
Improved Treatment of the Protein Backbone in Empirical Force Fields
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January 2004 |
Comparison of simple potential functions for simulating liquid water
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July 1983 |
Automated Force Field Parameterization for Nonpolarizable and Polarizable Atomic Models Based on Ab Initio Target Data
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July 2013 |
Acid−Base Profiling of Imatinib (Gleevec) and Its Fragments
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December 2004 |
Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison
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January 1988 |
CHARMM: The biomolecular simulation program
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July 2009 |
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
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July 1983 |
Scalable molecular dynamics with NAMD
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January 2005 |
Particle mesh Ewald: An N ⋅log( N ) method for Ewald sums in large systems
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June 1993 |
Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes
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March 1977 |
Hydration of Amino Acid Side Chains: Nonpolar and Electrostatic Contributions Calculated from Staged Molecular Dynamics Free Energy Simulations with Explicit Water Molecules
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October 2004 |
Calculation of Standard Binding Free Energies: Aromatic Molecules in the T4 Lysozyme L99A Mutant
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July 2006 |
Computation of binding free energy with molecular dynamics and grand canonical Monte Carlo simulations
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March 2008 |
Absolute Binding Free Energy Calculations Using Molecular Dynamics Simulations with Restraining Potentials
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October 2006 |
Absolute Binding Free Energy Calculations of Sparsomycin Analogs to the Bacterial Ribosome
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July 2010 |
Calculation of the standard binding free energy of sparsomycin to the ribosomal peptidyl-transferase P-site using molecular dynamics simulations with restraining potentials
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March 2010 |
Computational Analysis of the Binding Specificity of Gleevec to Abl, c-Kit, Lck, and c-Src Tyrosine Kinases
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September 2013 |
Role of Repulsive Forces in Determining the Equilibrium Structure of Simple Liquids
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June 1971 |
Computation of Absolute Hydration and Binding Free Energy with Free Energy Perturbation Distributed Replica-Exchange Molecular Dynamics
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August 2009 |
Free Energy Perturbation Hamiltonian Replica-Exchange Molecular Dynamics (FEP/H-REMD) for Absolute Ligand Binding Free Energy Calculations
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July 2010 |
Interfacing Q-Chem and CHARMM to perform QM/MM reaction path calculations: Interfacing Q-Chem and CHARMM to Perform QM/MM Reaction Path Calculations
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March 2007 |
Exploring the quantum mechanical/molecular mechanical replica path method: a pathway optimization of the chorismate to prephenate Claisen rearrangement catalyzed by chorismate mutase
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April 2003 |
Calculation of absolute protein-ligand binding free energy from computer simulations
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May 2005 |
THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method
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October 1992 |
Extension to the weighted histogram analysis method: combining umbrella sampling with free energy calculations
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March 2001 |
Basis for Resistance to Imatinib in 16 BCR-ABL Mutants as Determined Using Molecular Dynamics
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June 2009 |
Molecular basis explanation for imatinib resistance of BCR-ABL due to T315I and P-loop mutations from molecular dynamics simulations
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January 2008 |
Computations of Standard Binding Free Energies with Molecular Dynamics Simulations
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February 2009 |
Histone Methylation-Dependent Mechanisms Impose Ligand Dependency for Gene Activation by Nuclear Receptors
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February 2007 |
Protein Kinase−Inhibitor Database: Structural Variability of and Inhibitor Interactions with the Protein Kinase P-Loop
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September 2010 |
A molecular mechanics model for imatinib and imatinib:kinase binding
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January 2009 |
Visualizing the Histone Code on LSD1
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February 2007 |
Thermodynamic stability of water molecules in the bacteriorhodopsin proton channel: a molecular dynamics free energy perturbation study
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August 1996 |
The statistical-thermodynamic basis for computation of binding affinities: a critical review
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March 1997 |
Structural biology contributions to the discovery of drugs to treat chronic myelogenous leukaemia
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December 2006 |
Mechanisms of Resistance to Imatinib and Second-Generation Tyrosine Inhibitors in Chronic Myeloid Leukemia
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December 2009 |
Lessons learned from the development of an Abl tyrosine kinase inhibitor for chronic myelogenous leukemia
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January 2000 |