Genome sequence and annotation of Trichoderma parareesei, the ancestor of the cellulase producer Trichoderma reesei

Yang, Dongqing; Pomraning, Kyle; Kopchinskiy, Alexey; Karimi, Aghcheh Razieh; Atanasova, Lea; Chenthamara, Komal; Baker, Scott E.; Zhang, Ruifu; Shen, Qirong; Freitag, Michael; Kubicek, Christian P.; Druzhinina, Irina S.

doi:10.1128/genomeA.00885-15

Title: Genome sequence and annotation of Trichoderma parareesei, the ancestor of the cellulase producer Trichoderma reesei

Journal Article · Thu Aug 13 00:00:00 EDT 2015 · Genome Announcements

DOI:https://doi.org/10.1128/genomeA.00885-15· OSTI ID:1211607

Yang, Dongqing ^[1]; Pomraning, Kyle ^[2]; Kopchinskiy, Alexey ^[3]; Karimi, Aghcheh Razieh ^[3]; Atanasova, Lea ^[3]; Chenthamara, Komal ^[3]; Baker, Scott E. ^[4]; Zhang, Ruifu ^[5]; Shen, Qirong ^[5]; Freitag, Michael ^[6]; Kubicek, Christian P. ^[3]; Druzhinina, Irina S. ^[3]

TU Wien, Vienna (Austria). Institute of Chemical Engineering; Nanjing Agricultural University, Nanjing (China). Jiangsu Key Lab for Organic Waste Utilization and National Engineering Research Centre for Organic-Based Fertilizers.
Pacific Northwest National Laboratory, Richland, WA (United States)
TU Wien, Vienna (Austria). Institute of Chemical Engineering.
Pacific Northwest National Laboratory; Richland, WA (United States)
Nanjing Agricultural University, Nanjing (China). Jiangsu Key Lab for Organic Waste Utilization and National Engineering Research Centre for Organic-Based Fertilizers.
Oregon State University, Corvallis, OR (United States). Department of Biochemistry and Biophysics.

The filamentous fungus Trichoderma parareesei is the asexually reproducing ancestor of Trichoderma reesei, the holomorphic industrial producer of cellulase and hemicellulase. Here, we present the genome sequence of the T. parareesei type strain CBS 125925, which contains genes for 9,318 proteins.

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Research Organization:: Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

Sponsoring Organization:: USDOE; Austrian Science Fund (FWF)

Grant/Contract Number:: AC05-76RL01830; I-1249 and P25613-B20

OSTI ID:: 1211607

Journal Information:: Genome Announcements, Vol. 3, Issue 4; ISSN 2169-8287

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (7)

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Evolution and Ecophysiology of the Industrial Producer Hypocrea jecorina (Anamorph Trichoderma reesei) and a New Sympatric Agamospecies Related to It Druzhinina, Irina S.; Komoń-Zelazowska, Monika; Atanasova, Lea PLoS ONE, Vol. 5, Issue 2 https://doi.org/10.1371/journal.pone.0009191	journal	February 2010
Genetic and metabolic diversity of Trichoderma: a case study on South-East Asian isolates Kubicek, Christian P.; Bissett, John; Druzhinina, Irina Fungal Genetics and Biology, Vol. 38, Issue 3 https://doi.org/10.1016/S1087-1845(02)00583-2	journal	April 2003
An oligonucleotide barcode for species identification in Trichoderma and Hypocrea Druzhinina, Irina S.; Kopchinskiy, Alexei G.; Komoń, Monika Fungal Genetics and Biology, Vol. 42, Issue 10 https://doi.org/10.1016/j.fgb.2005.06.007	journal	October 2005
Clonal Species Trichoderma parareesei sp. nov. Likely Resembles the Ancestor of the Cellulase Producer Hypocrea jecorina/T. reesei Atanasova, L.; Jaklitsch, W. M.; Komon-Zelazowska, M. Applied and Environmental Microbiology, Vol. 76, Issue 21 https://doi.org/10.1128/AEM.01184-10	journal	September 2010
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Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments Haas, Brian J.; Salzberg, Steven L.; Zhu, Wei Genome Biology, Vol. 9, Issue 1 https://doi.org/10.1186/gb-2008-9-1-r7	journal	January 2008

Cited By (5)

Several steps of lateral gene transfer followed by events of ‘birth-and-death’ evolution shaped a fungal sorbicillinoid biosynthetic gene cluster Druzhinina, Irina S.; Kubicek, Eva M.; Kubicek, Christian P. BMC Evolutionary Biology, Vol. 16, Issue 1 https://doi.org/10.1186/s12862-016-0834-6	journal	December 2016
Evolution and comparative genomics of the most common Trichoderma species Kubicek, Christian P.; Steindorff, Andrei S.; Chenthamara, Komal BMC Genomics, Vol. 20, Issue 1 https://doi.org/10.1186/s12864-019-5680-7	journal	June 2019
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts Druzhinina, Irina S.; Chenthamara, Komal; Zhang, Jian PLOS Genetics, Vol. 14, Issue 4 https://doi.org/10.1371/journal.pgen.1007322	journal	April 2018
Structural Diversity and Bioactivities of Peptaibol Compounds From the Longibrachiatum Clade of the Filamentous Fungal Genus Trichoderma Marik, Tamás; Tyagi, Chetna; Balázs, Dóra Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.01434	journal	June 2019
Trichoderma parareesei Favors the Tolerance of Rapeseed (Brassica napus L.) to Salinity and Drought Due to a Chorismate Mutase Poveda, Jorge Agronomy, Vol. 10, Issue 1 https://doi.org/10.3390/agronomy10010118	journal	January 2020

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