The tmRNA website

Hudson, Corey M.; Williams, Kelly P.

doi:10.1093/nar/gku1109

Title: The tmRNA website

Journal Article · Wed Nov 05 00:00:00 EST 2014 · Nucleic Acids Research

DOI:https://doi.org/10.1093/nar/gku1109· OSTI ID:1183117

Hudson, Corey M. ^[1]; Williams, Kelly P. ^[1]

Sandia National Lab. (SNL-CA), Livermore, CA (United States)

We report that the transfer-messenger RNA (tmRNA) and its partner protein SmpB act together in resolving problems arising when translating bacterial ribosomes reach the end of mRNA with no stop codon. Their genes have been found in nearly all bacterial genomes and in some organelles. The tmRNA Website serves tmRNA sequences, alignments and feature annotations, and has recently moved to http: //bioinformatics.sandia.gov/tmrna/. New features include software used to find the sequences, an update raising the number of unique tmRNA sequences from 492 to 1716, and a database of SmpB sequences which are served along with the tmRNA sequence from the same organism.

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Research Organization:: Sandia National Lab. (SNL-CA), Livermore, CA (United States)

Sponsoring Organization:: USDOE National Nuclear Security Administration (NNSA)

Grant/Contract Number:: AC04-94AL85000

OSTI ID:: 1183117

Report Number(s):: SAND2014-17264J; 537177

Journal Information:: Nucleic Acids Research, Vol. 43, Issue D1; ISSN 0305-1048

Publisher:: Oxford University PressCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 22 works

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Ribosome pausing, arrest and rescue in bacteria and eukaryotes Buskirk, Allen R.; Green, Rachel Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 372, Issue 1716 https://doi.org/10.1098/rstb.2016.0183	journal	March 2017
Comparing miRNA structure of mirtrons and non-mirtrons Titov, Igor I.; Vorozheykin, Pavel S. BMC Genomics, Vol. 19, Issue S3 https://doi.org/10.1186/s12864-018-4473-8	journal	February 2018
A mutagenesis screen for essential plastid biogenesis genes in human malaria parasites Tang, Yong; Meister, Thomas R.; Walczak, Marta PLOS Biology, Vol. 17, Issue 2 https://doi.org/10.1371/journal.pbio.3000136	journal	February 2019
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tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter Keiler, K. C.; Shapiro, L.; Williams, K. P. Proceedings of the National Academy of Sciences, Vol. 97, Issue 14 https://doi.org/10.1073/pnas.97.14.7778	journal	July 2000
Comparing miRNA structure of mirtrons and non-mirtrons Titov, Igor I.; Vorozheykin, Pavel S. BMC Genomics https://doi.org/10.1101/218701	journal	November 2017
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