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Title: Relation between mRNA expression and sequence information in Desulfovibrio vulgaris: Combinatorial contributions of upstream regulatory motifs and coding sequence features to variations in mRNA abundance

Abstract

ABSTRACT-The context-dependent expression of genes is the core for biological activities, and significant attention has been given to identification of various factors contributing to gene expression at genomic scale. However, so far this type of analysis has been focused whether on relation between mRNA expression and non-coding sequence features such as upstream regulatory motifs or on correlation between mRN abundance and non-random features in coding sequences (e.g. codon usage and amino acid usage). In this study multiple regression analyses of the mRNA abundance and all sequence information in Desulfovibrio vulgaris were performed, with the goal to investigate how much coding and non-coding sequence features contribute to the variations in mRNA expression, and in what manner they act together...

Authors:
; ;
Publication Date:
Research Org.:
Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
885444
Report Number(s):
PNNL-SA-46106
Journal ID: ISSN 0006-291X; BBRCA9; TRN: US200616%%641
DOE Contract Number:  
AC05-76RL01830
Resource Type:
Journal Article
Journal Name:
Biochemical and Biophysical Research Communications, 344(1):114-121
Additional Journal Information:
Journal Volume: 344; Journal Issue: 1; Journal ID: ISSN 0006-291X
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; ABUNDANCE; AMINO ACIDS; CODONS; DESULFOVIBRIO; GENES; mRNA expression and sequence information on D. vulgaris

Citation Formats

Wu, Gang, Nie, Lei, and Zhang, Weiwen. Relation between mRNA expression and sequence information in Desulfovibrio vulgaris: Combinatorial contributions of upstream regulatory motifs and coding sequence features to variations in mRNA abundance. United States: N. p., 2006. Web. doi:10.1016/j.bbrc.2006.03.124.
Wu, Gang, Nie, Lei, & Zhang, Weiwen. Relation between mRNA expression and sequence information in Desulfovibrio vulgaris: Combinatorial contributions of upstream regulatory motifs and coding sequence features to variations in mRNA abundance. United States. https://doi.org/10.1016/j.bbrc.2006.03.124
Wu, Gang, Nie, Lei, and Zhang, Weiwen. 2006. "Relation between mRNA expression and sequence information in Desulfovibrio vulgaris: Combinatorial contributions of upstream regulatory motifs and coding sequence features to variations in mRNA abundance". United States. https://doi.org/10.1016/j.bbrc.2006.03.124.
@article{osti_885444,
title = {Relation between mRNA expression and sequence information in Desulfovibrio vulgaris: Combinatorial contributions of upstream regulatory motifs and coding sequence features to variations in mRNA abundance},
author = {Wu, Gang and Nie, Lei and Zhang, Weiwen},
abstractNote = {ABSTRACT-The context-dependent expression of genes is the core for biological activities, and significant attention has been given to identification of various factors contributing to gene expression at genomic scale. However, so far this type of analysis has been focused whether on relation between mRNA expression and non-coding sequence features such as upstream regulatory motifs or on correlation between mRN abundance and non-random features in coding sequences (e.g. codon usage and amino acid usage). In this study multiple regression analyses of the mRNA abundance and all sequence information in Desulfovibrio vulgaris were performed, with the goal to investigate how much coding and non-coding sequence features contribute to the variations in mRNA expression, and in what manner they act together...},
doi = {10.1016/j.bbrc.2006.03.124},
url = {https://www.osti.gov/biblio/885444}, journal = {Biochemical and Biophysical Research Communications, 344(1):114-121},
issn = {0006-291X},
number = 1,
volume = 344,
place = {United States},
year = {Fri May 26 00:00:00 EDT 2006},
month = {Fri May 26 00:00:00 EDT 2006}
}