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This content will become publicly available on August 25, 2017

Title: Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses

Active data screening is an integral part of many scientific activities, and mobile technologies have greatly facilitated this process by minimizing the reliance on large hardware instrumentation. In order to meet with the increasingly growing field of metabolomics and heavy workload of data processing, we designed the first remote metabolomic data screening platform for mobile devices. Two mobile applications (apps), XCMS Mobile and METLIN Mobile, facilitate access to XCMS and METLIN, which are the most important components in the computer-based XCMS Online platforms. These mobile apps allow for the visualization and analysis of metabolic data throughout the entire analytical process. Specifically, XCMS Mobile and METLIN Mobile provide the capabilities for remote monitoring of data processing, real time notifications for the data processing, visualization and interactive analysis of processed data (e.g., cloud plots, principle component analysis, box-plots, extracted ion chromatograms, and hierarchical cluster analysis), and database searching for metabolite identification. These apps, available on Apple iOS and Google Android operating systems, allow for the migration of metabolomic research onto mobile devices for better accessibility beyond direct instrument operation. The utility of XCMS Mobile and METLIN Mobile functionalities was developed and is demonstrated here through the metabolomic LC-MS analyses of stem cells,more » colon cancer, aging, and bacterial metabolism.« less
Authors:
 [1] ;  [1] ;  [1] ;  [1] ;  [1] ;  [1] ;  [2] ;  [2] ;  [2] ;  [3] ;  [3] ;  [4] ;  [5] ;  [5] ;  [6] ;  [1] ;  [7]
  1. Scripps Research Inst., La Jolla, CA (United States). Scripps Center for Metabolomics
  2. Univ. of Georgia, Athens, GA (United States). Dept. of Biochemistry and Molecular Biology
  3. Montana State Univ., Bozeman, MT (United States). Dept of Microbiology and Immunology and Center for Biofilm Engineering
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Life Sciences Division
  5. Scripps Research Inst., Jupiter, FL (United States)'. Dept. of Metabolism and Aging
  6. Scripps Research Inst., La Jolla, CA (United States). Dept. of Chemistry
  7. Scripps Research Inst., La Jolla, CA (United States). Scripps Center for Metabolomics; Scripps Research Inst., Jupiter, FL (United States)'. Dept. of Metabolism and Aging
Publication Date:
OSTI Identifier:
1329026
Grant/Contract Number:
AC02-05CH11231; R01GMH4368; PO1A1043376-02S1
Type:
Accepted Manuscript
Journal Name:
Analytical Chemistry
Additional Journal Information:
Journal Volume: 88; Journal Issue: 19; Journal ID: ISSN 0003-2700
Publisher:
American Chemical Society (ACS)
Research Org:
The Scripps Research Inst., La Jolla, CA (United States)
Sponsoring Org:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23); National Institutes of Health (NIH); USDOE Office of Science (SC), Basic Energy Sciences (BES) (SC-22)
Country of Publication:
United States
Language:
English
Subject:
97 MATHEMATICS AND COMPUTING