High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym

Reeve, Wayne; Sullivan, John; Ronson, Clive; Tian, Rui; Munk, Christine; Han, Cliff; Reddy, T. B. K.; Seshadri, Rekha; Woyke, Tanja; Pati, Amrita; Markowitz, Victor; Ivanova, Natalia; Kyrpides, Nikos

doi:10.1186/s40793-015-0049-2

Title: High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym

Journal Article · Fri Aug 14 00:00:00 EDT 2015 · Standards in Genomic Sciences

DOI:https://doi.org/10.1186/s40793-015-0049-2· OSTI ID:1255535

Reeve, Wayne ^[1]; Sullivan, John ^[2]; Ronson, Clive ^[2]; Tian, Rui ^[1]; Munk, Christine ^[3]; Han, Cliff ^[3]; Reddy, T. B. K. ^[4]; Seshadri, Rekha ^[4]; Woyke, Tanja ^[4]; Pati, Amrita ^[4]; Markowitz, Victor ^[5]; Ivanova, Natalia ^[4]; Kyrpides, Nikos ^[6]

Murdoch Univ. Perth, WA (Australia). Centre for Rhizobium Studies
Univ. of Otago, Dunedin (New Zealand)
Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
DOE Joint Genome Institute, Walnut Creek, CA (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
DOE Joint Genome Institute, Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)

Mesorhizobium loti strain CJ3Sym was isolated in 1998 following transfer of the integrative and conjugative element ICE Ml Sym^R7A , also known as the R7A symbiosis island, in a laboratory mating from the donor M. loti strain R7A to a nonsymbiotic recipient Mesorhizobium strain CJ3. Strain CJ3 was originally isolated from a field site in the Rocklands range in New Zealand in 1994. CJ3Sym is an aerobic, Gram-negative, non-spore-forming rod. This report reveals the genome of M. loti strain CJ3Sym currently comprises 70 scaffolds totaling 7,563,725 bp. In conclusion, the high-quality draft genome is arranged in 70 scaffolds of 71 contigs, contains 7,331 protein-coding genes and 70 RNA-only encoding genes, and is part of the GEBA-RNB project proposal.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231; AC52-07NA27344; AC02-06NA25396

OSTI ID:: 1255535

Journal Information:: Standards in Genomic Sciences, Vol. 10, Issue 1; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 1 work

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High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym [Supplemental Data] Reeve, Wayne; Sullivan, John; Ronson, Clive https://doi.org/10.6084/m9.figshare.c.3599261 The current record is supplemented by this dataset	dataset	August 2015
High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym [Supplemental Data] Reeve, Wayne; Sullivan, John; Ronson, Clive https://doi.org/10.6084/m9.figshare.c.3599261.v1 The current record is supplemented by this dataset	dataset	August 2015
Additional file 1: Table S1. of High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym Reeve, Wayne; Sullivan, John; Ronson, Clive https://doi.org/10.6084/m9.figshare.c.3599261_d1 The current record is supplemented by this text	text	January 2015
Additional file 1: Table S1. of High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym Reeve, Wayne; Sullivan, John; Ronson, Clive https://doi.org/10.6084/m9.figshare.c.3599261_d1.v1 The current record is supplemented by this dataset	dataset	August 2015

Title: High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym

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