Proteomics and transcriptomics analyses of Arabidopsis floral buds uncover important functions of ARABIDOPSIS SKP1-LIKE1

Lu, Dihong; Ni, Weimin; Stanley, Bruce A.; Ma, Hong

doi:10.1186/s12870-015-0571-9

Title: Proteomics and transcriptomics analyses of Arabidopsis floral buds uncover important functions of ARABIDOPSIS SKP1-LIKE1

Journal Article · Thu Mar 03 00:00:00 EST 2016 · BMC Plant Biology

DOI:https://doi.org/10.1186/s12870-015-0571-9· OSTI ID:1252725

Lu, Dihong ^[1]; Ni, Weimin ^[2]; Stanley, Bruce A. ^[3]; Ma, Hong ^[4]

Pennsylvania State Univ., University Park, PA (United States)
Pennsylvania State Univ., University Park, PA (United States); Univ. of California, Berkeley, CA (United States)
Pennsylvania State Univ. College of Medicine, Hershey, PA (United States)
Fudan Univ., Shanghai (China)

The ARABIDOPSIS SKP1-LIKE1 (ASK1) protein functions as a subunit of SKP1-CUL1-F-box (SCF) E3 ubiquitin ligases. Previous genetic studies showed that ASK1 plays important roles in Arabidopsis flower development and male meiosis. However, the molecular impact of ASK1-containing SCF E3 ubiquitin ligases (ASK1-E3s) on the floral proteome and transcriptome is unknown. Here we identified proteins that are potentially regulated by ASK1-E3s by comparing floral bud proteomes of wild-type and the ask1 mutant plants. More than 200 proteins were detected in the ask1 mutant but not in wild-type and >300 were detected at higher levels in the ask1 mutant than in wild-type, but their RNA levels were not significantly different between wild-type and ask1 floral buds as shown by transcriptomics analysis, suggesting that they are likely regulated at the protein level by ASK1-E3s. Integrated analyses of floral proteomics and transcriptomics of ask1 and wild-type uncovered several potential aspects of ASK1-E3 functions, including regulation of transcription regulators, kinases, peptidases, and ribosomal proteins, with implications on possible mechanisms of ASK1-E3 functions in floral development. In conclusion, our results suggested that ASK1-E3s play important roles in Arabidopsis protein degradation during flower development. This study opens up new possibilities for further functional studies of these candidate E3 substrates.

View Accepted Manuscript (DOE)

Cite

Export

Save

Research Organization:: Pennsylvania State Univ., University Park, PA (United States)

Sponsoring Organization:: USDOE

Grant/Contract Number:: FG02-02ER15332

OSTI ID:: 1252725

Journal Information:: BMC Plant Biology, Vol. 16, Issue 1; ISSN 1471-2229

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

Citation Metrics:

Cited by: 9 works

Citation information provided by
Web of Science

References (90)

Coordination of cell proliferation and cell expansion mediated by ribosome-related processes in the leaves of Arabidopsis thaliana Fujikura, Ushio; Horiguchi, Gorou; Ponce, María Rosa The Plant Journal, Vol. 59, Issue 3 https://doi.org/10.1111/j.1365-313X.2009.03886.x	journal	August 2009
Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease Kraft, Claudine; Deplazes, Anna; Sohrmann, Marc Nature Cell Biology, Vol. 10, Issue 5 https://doi.org/10.1038/ncb1723	journal	April 2008
NUCLEAR FUSION DEFECTIVE1 Encodes the Arabidopsis RPL21M Protein and Is Required for Karyogamy during Female Gametophyte Development and Fertilization Portereiko, Michael F.; Sandaklie-Nikolova, Linda; Lloyd, Alan Plant Physiology, Vol. 141, Issue 3 https://doi.org/10.1104/pp.106.079319	journal	May 2006
The Arabidopsis bHLH Transcription Factors MYC3 and MYC4 Are Targets of JAZ Repressors and Act Additively with MYC2 in the Activation of Jasmonate Responses Fernández-Calvo, Patricia; Chini, Andrea; Fernández-Barbero, Gemma The Plant Cell, Vol. 23, Issue 2 https://doi.org/10.1105/tpc.110.080788	journal	February 2011
An Arabidopsis F-box protein acts as a transcriptional co-factor to regulate floral development Chae, E.; Tan, Q. K. -G.; Hill, T. A. Development, Vol. 135, Issue 7 https://doi.org/10.1242/dev.015842	journal	February 2008
Programmed Cell Death in Floral Organs: How and Why do Flowers Die? Rogers, Hilary J. Annals of Botany, Vol. 97, Issue 3 https://doi.org/10.1093/aob/mcj051	journal	January 2006
Interaction of Polycomb-group proteins controlling flowering in Arabidopsis Chanvivattana, Y. Development, Vol. 131, Issue 21 https://doi.org/10.1242/dev.01400	journal	November 2004
Identification of an SCF ubiquitin-ligase complex required for auxin response in Arabidopsis thaliana Gray, W. M.; del Pozo, J. C.; Walker, L. Genes & Development, Vol. 13, Issue 13 https://doi.org/10.1101/gad.13.13.1678	journal	July 1999
The Arabidopsis SKP1-LIKE1 gene is essential for male meiosis and may control homologue separation Yang, M.; Hu, Y.; Lodhi, M. Proceedings of the National Academy of Sciences, Vol. 96, Issue 20 https://doi.org/10.1073/pnas.96.20.11416	journal	September 1999
Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics Baerenfaller, K.; Grossmann, J.; Grobei, M. A. Science, Vol. 320, Issue 5878 https://doi.org/10.1126/science.1157956	journal	May 2008
Expression and Interaction Analysis of Arabidopsis Skp1-Related Genes Takahashi, Naoki; Kuroda, Hirofumi; Kuromori, Takashi Plant and Cell Physiology, Vol. 45, Issue 1 https://doi.org/10.1093/pcp/pch009	journal	January 2004
Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development Feng, Baomin; Lu, Dihong; Ma, Xuan The Plant Journal, Vol. 72, Issue 4 https://doi.org/10.1111/j.1365-313X.2012.05104.x	journal	September 2012
Technical improvements in two-dimensional electrophoresis increase the level of genetic variation detected in wheat-seedling proteins Damerval, Catherine; De Vienne, Dominique; Zivy, Michel Electrophoresis, Vol. 7, Issue 1 https://doi.org/10.1002/elps.1150070108	journal	January 1986
Cross Talk between Ubiquitination and Demethylation Huang, XiaoDong; Dixit, Vishva M. Molecular and Cellular Biology, Vol. 31, Issue 18 https://doi.org/10.1128/mcb.06001-11	journal	September 2011
The LysM receptor kinase CERK1 mediates bacterial perception in Arabidopsis Gimenez-Ibanez, Selena; Ntoukakis, Vardis; Rathjen, John P. Plant Signaling & Behavior, Vol. 4, Issue 6 https://doi.org/10.4161/psb.4.6.8697	journal	June 2009
The JAZ family of repressors is the missing link in jasmonate signalling Chini, A.; Fonseca, S.; Fernández, G. Nature, Vol. 448, Issue 7154 https://doi.org/10.1038/nature06006	journal	July 2007
CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL Function Synergistically in the Circadian Clock of Arabidopsis Lu, Sheen X.; Knowles, Stephen M.; Andronis, Christos Plant Physiology, Vol. 150, Issue 2 https://doi.org/10.1104/pp.108.133272	journal	February 2009
Arabidopsis REF6 is a histone H3 lysine 27 demethylase Lu, Falong; Cui, Xia; Zhang, Shuaibin Nature Genetics, Vol. 43, Issue 7 https://doi.org/10.1038/ng.854	journal	June 2011
Arabidopsis CDKA;1 , a cdc2 homologue, controls proliferation of generative cells in male gametogenesis Iwakawa, Hidekazu; Shinmyo, Atsuhiko; Sekine, Masami The Plant Journal, Vol. 45, Issue 5 https://doi.org/10.1111/j.1365-313x.2005.02643.x	journal	March 2006
The Arabidopsis thaliana vernalization response requires a polycomb-like protein complex that also includes VERNALIZATION INSENSITIVE 3 Wood, C. C.; Robertson, M.; Tanner, G. Proceedings of the National Academy of Sciences, Vol. 103, Issue 39 https://doi.org/10.1073/pnas.0606385103	journal	September 2006
The Arabidopsis Calcium-Dependent Protein Kinase, CPK6, Functions as a Positive Regulator of Methyl Jasmonate Signaling in Guard Cells Munemasa, Shintaro; Hossain, Mohammad Anowar; Nakamura, Yoshimasa Plant Physiology, Vol. 155, Issue 1 https://doi.org/10.1104/pp.110.162750	journal	October 2010
Comparison of Petunia inflata S -Locus F-Box Protein (Pi SLF) with Pi SLF–Like Proteins Reveals Its Unique Function in S-RNase–Based Self-Incompatibility Hua, Zhihua; Meng, Xiaoying; Kao, Teh-hui The Plant Cell, Vol. 19, Issue 11 https://doi.org/10.1105/tpc.107.055426	journal	November 2007
agriGO: a GO analysis toolkit for the agricultural community Du, Zhou; Zhou, Xin; Ling, Yi Nucleic Acids Research, Vol. 38, Issue suppl_2 https://doi.org/10.1093/nar/gkq310	journal	April 2010
Roles of Arabidopsis Cyclin-Dependent Kinase C Complexes in Cauliflower Mosaic Virus Infection, Plant Growth, and Development Cui, Xiaofeng; Fan, Baofang; Scholz, James The Plant Cell, Vol. 19, Issue 4 https://doi.org/10.1105/tpc.107.051375	journal	April 2007
Examining Protein Stability and Its Relevance for Plant Growth and Development Schwechheimer, Claus; Willige, Björn C.; Zourelidou, Melina Plant Signal Transduction https://doi.org/10.1007/978-1-59745-289-2_10	book	January 2009
Ribosomal protein S14 unties the MDM2–p53 loop upon ribosomal stress Zhou, X.; Hao, Q.; Liao, J. Oncogene, Vol. 32, Issue 3 https://doi.org/10.1038/onc.2012.63	journal	March 2012
BRS1, a serine carboxypeptidase, regulates BRI1 signaling in Arabidopsis thaliana Li, J.; Lease, K. A.; Tax, F. E. Proceedings of the National Academy of Sciences, Vol. 98, Issue 10 https://doi.org/10.1073/pnas.091065998	journal	April 2001
UNUSUAL FLORAL ORGANS Controls Meristem Identity and Organ Primordia Fate in Arabidopsis. Wilkinson, M. D.; Haughn, G. W. The Plant Cell https://doi.org/10.1105/tpc.7.9.1485	journal	September 1995
Functional characterization of two chimeric proteins between a Petunia inflata S-locus F-box protein, PiSLF2, and a PiSLF-like protein, PiSLFLb-S2 Fields, Allison M.; Wang, Ning; Hua, Zhihua Plant Molecular Biology, Vol. 74, Issue 3 https://doi.org/10.1007/s11103-010-9672-x	journal	August 2010
The evolutionarily conserved Arabidopsis thaliana F-box protein AtFBP7 is required for efficient translation during temperature stress Calderón-Villalobos, Luz Irina A.; Nill, Carola; Marrocco, Katia Gene, Vol. 392, Issue 1-2 https://doi.org/10.1016/j.gene.2006.11.016	journal	May 2007
A Label-free Quantitative Proteomics Strategy to Identify E3 Ubiquitin Ligase Substrates Targeted to Proteasome Degradation Burande, Clara F.; Heuzé, Mélina L.; Lamsoul, Isabelle Molecular & Cellular Proteomics, Vol. 8, Issue 7 https://doi.org/10.1074/mcp.m800410-mcp200	journal	April 2009
Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors Paoletti, A. C.; Parmely, T. J.; Tomomori-Sato, C. Proceedings of the National Academy of Sciences, Vol. 103, Issue 50 https://doi.org/10.1073/pnas.0606379103	journal	November 2006
Functional Proteomics of Arabidopsis thaliana Guard Cells Uncovers New Stomatal Signaling Pathways Zhao, Zhixin; Zhang, Wei; Stanley, Bruce A. The Plant Cell, Vol. 20, Issue 12 https://doi.org/10.1105/tpc.108.063263	journal	December 2008
AtCPK6, a functionally redundant and positive regulator involved in salt/drought stress tolerance in Arabidopsis Xu, Jing; Tian, Yong-Sheng; Peng, Ri-He Planta, Vol. 231, Issue 6 https://doi.org/10.1007/s00425-010-1122-0	journal	March 2010
JAZ repressor proteins are targets of the SCFCOI1 complex during jasmonate signalling Thines, Bryan; Katsir, Leron; Melotto, Maeli Nature, Vol. 448, Issue 7154 https://doi.org/10.1038/nature05960	journal	July 2007
Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors Florens, L.; Carozza, M.; Swanson, S. Methods, Vol. 40, Issue 4 https://doi.org/10.1016/j.ymeth.2006.07.028	journal	December 2006
The F-box protein TIR1 is an auxin receptor Dharmasiri, Nihal; Dharmasiri, Sunethra; Estelle, Mark Nature, Vol. 435, Issue 7041 https://doi.org/10.1038/nature03543	journal	May 2005
Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings Igawa, Tomoko; Fujiwara, Masayuki; Takahashi, Hirotaka Journal of Experimental Botany, Vol. 60, Issue 11 https://doi.org/10.1093/jxb/erp134	journal	May 2009
The Arabidopsis F-box protein TIR1 is an auxin receptor Kepinski, Stefan; Leyser, Ottoline Nature, Vol. 435, Issue 7041 https://doi.org/10.1038/nature03542	journal	May 2005
Identification of Substrates for F‐Box Proteins Jin, Jianping; Ang, Xiaolu L.; Shirogane, Takahiro Methods in Enzymology https://doi.org/10.1016/S0076-6879(05)99020-4	book	December 2005
The SCF ^COI1 Ubiquitin-Ligase Complexes Are Required for Jasmonate Response in Arabidopsis Xu, Linghui; Liu, Fuquan; Lechner, Esther The Plant Cell, Vol. 14, Issue 8 https://doi.org/10.1105/tpc.003368	journal	August 2002
SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase Farras, R. The EMBO Journal, Vol. 20, Issue 11 https://doi.org/10.1093/emboj/20.11.2742	journal	June 2001
Ubiquitin, Hormones and Biotic Stress in Plants Dreher, K.; Callis, J. Annals of Botany, Vol. 99, Issue 5 https://doi.org/10.1093/aob/mcl255	journal	May 2007
Direct Binding of a Plant LysM Receptor-like Kinase, LysM RLK1/CERK1, to Chitin in Vitro Iizasa, Ei'ichi; Mitsutomi, Masaru; Nagano, Yukio Journal of Biological Chemistry, Vol. 285, Issue 5 https://doi.org/10.1074/jbc.M109.027540	journal	December 2009
Conservation and divergence of ASK1 and ASK2 gene functions during male meiosis in Arabidopsis thaliana Zhao, Dazhong; Han, Tianfu; Risseeuw, Eddy Plant Molecular Biology, Vol. 53, Issue 1/2 https://doi.org/10.1023/b:plan.0000009273.81702.b5	journal	September 2003
Partially redundant functions of two SET-domain polycomb-group proteins in controlling initiation of seed development in Arabidopsis Wang, D.; Tyson, M. D.; Jackson, S. S. Proceedings of the National Academy of Sciences, Vol. 103, Issue 35 https://doi.org/10.1073/pnas.0605551103	journal	August 2006
An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene. Giuliano, G.; Pichersky, E.; Malik, V. S. Proceedings of the National Academy of Sciences, Vol. 85, Issue 19 https://doi.org/10.1073/pnas.85.19.7089	journal	October 1988
Mutation of either G box or I box sequences profoundly affects expression from the Arabidopsis rbcS-1A promoter. Donald, R. G.; Cashmore, A. R. The EMBO Journal, Vol. 9, Issue 6 https://doi.org/10.1002/j.1460-2075.1990.tb08295.x	journal	June 1990
Large-scale analysis of the yeast proteome by multidimensional protein identification technology Washburn, Michael P.; Wolters, Dirk; Yates, John R. Nature Biotechnology, Vol. 19, Issue 3 https://doi.org/10.1038/85686	journal	March 2001
Guard Cell Proteome Reveals Signals and Surprises Mach, Jennifer The Plant Cell, Vol. 20, Issue 12 https://doi.org/10.1105/tpc.108.201214	journal	December 2008
SnRK1 Isoforms AKIN10 and AKIN11 Are Differentially Regulated in Arabidopsis Plants under Phosphate Starvation Fragoso, Selene; Espíndola, Laura; Páez-Valencia, Julio Plant Physiology, Vol. 149, Issue 4 https://doi.org/10.1104/pp.108.133298	journal	February 2009
An F-box gene linked to the self-incompatibility (S) locus of Antirrhinum is expressed specifically in pollen and tapetum Lai, Zhao; Ma, Wenshi; Han, Bin Plant Molecular Biology, Vol. 50, Issue 1, p. 29-41 https://doi.org/10.1023/A:1016050018779	journal	September 2002
The MAP Kinase Kinase MKK2 Affects Disease Resistance in Arabidopsis Brader, Günter; Djamei, Armin; Teige, Markus Molecular Plant-Microbe Interactions, Vol. 20, Issue 5 https://doi.org/10.1094/mpmi-20-5-0589	journal	May 2007
Mass Spectrometry-Based Label-Free Quantitative Proteomics Zhu, Wenhong; Smith, Jeffrey W.; Huang, Chun-Ming Journal of Biomedicine and Biotechnology, Vol. 2010 https://doi.org/10.1155/2010/840518	journal	January 2010
MEKK1, MKK1/MKK2 and MPK4 function together in a mitogen-activated protein kinase cascade to regulate innate immunity in plants Gao, Minghui; Liu, Jinman; Bi, Dongling Cell Research, Vol. 18, Issue 12 https://doi.org/10.1038/cr.2008.300	journal	November 2008
A Basic Helix-Loop-Helix Transcription Factor in Arabidopsis, MYC2, Acts as a Repressor of Blue Light–Mediated Photomorphogenic Growth Yadav, Vandana; Mallappa, Chandrashekara; Gangappa, Sreeramaiah N. The Plant Cell, Vol. 17, Issue 7 https://doi.org/10.1105/tpc.105.032060	journal	May 2005
A Model for Random Sampling and Estimation of Relative Protein Abundance in Shotgun Proteomics Liu, Hongbin; Sadygov, Rovshan G.; Yates, John R. Analytical Chemistry, Vol. 76, Issue 14 https://doi.org/10.1021/ac0498563	journal	July 2004
The ASK1 and ASK2 Genes Are Essential for Arabidopsis Early Development Liu, Fuquan; Ni, Weimin; Griffith, Megan E. The Plant Cell, Vol. 16, Issue 1 https://doi.org/10.1105/tpc.017772	journal	December 2003
The MKK2 Pathway Mediates Cold and Salt Stress Signaling in Arabidopsis Markus, Teige,; Róbert, Dóczi,; Kazuo, Shinozaki, The University of North Carolina at Chapel Hill University Libraries https://doi.org/10.17615/zxz4-ne88	text	January 2004
ORE9, an F-Box Protein That Regulates Leaf Senescence in Arabidopsis Woo, H. R. THE PLANT CELL ONLINE, Vol. 13, Issue 8 https://doi.org/10.1105/tpc.13.8.1779	journal	August 2001
Multidimensional Protein Identification Technology (MudPIT) Analysis of Ubiquitinated Proteins in Plants Maor, Rudy; Jones, Alex; Nühse, Thomas S. Molecular & Cellular Proteomics, Vol. 6, Issue 4 https://doi.org/10.1074/mcp.m600408-mcp200	journal	January 2007
A LEAFY co-regulator encoded by UNUSUAL FLORAL ORGANS Lee, Ilha; Wolfe, Diana S.; Nilsson, Ove Current Biology, Vol. 7, Issue 2 https://doi.org/10.1016/s0960-9822(06)00053-4	journal	February 1997
Formation of an SCFZTL complex is required for proper regulation of circadian timing: SCFZTL is required for circadian regulation Han, Linqu; Mason, Mary; Risseeuw, Eddy P. The Plant Journal, Vol. 40, Issue 2 https://doi.org/10.1111/j.1365-313X.2004.02207.x	journal	September 2004
Parallels between UNUSUAL FLORAL ORGANS and FIMBRIATA, genes controlling flower development in Arabidopsis and Antirrhinum. Ingram, G. C.; Goodrich, J.; Wilkinson, M. D. The Plant Cell, Vol. 7, Issue 9 https://doi.org/10.1105/tpc.7.9.1501	journal	September 1995
COI1 links jasmonate signalling and fertility to the SCF ubiquitin-ligase complex in Arabidopsis Devoto, Alessandra; Nieto-Rostro, Manuela; Xie, Daoxin The Plant Journal, Vol. 32, Issue 4 https://doi.org/10.1046/j.1365-313X.2002.01432.x	journal	November 2002
Deubiquitination of p53 by HAUSP is an important pathway for p53 stabilization Li, Muyang; Chen, Delin; Shiloh, Ariel Nature, Vol. 416, Issue 6881 https://doi.org/10.1038/nature737	journal	March 2002
CDPKs CPK6 and CPK3 Function in ABA Regulation of Guard Cell S-Type Anion- and Ca2+- Permeable Channels and Stomatal Closure Mori, Izumi C.; Murata, Yoshiyuki; Yang, Yingzhen PLoS Biology, Vol. 4, Issue 10 https://doi.org/10.1371/journal.pbio.0040327	journal	October 2006
Analysis of the Arabidopsis Floral Proteome: Detection of over 2 000 Proteins and Evidence for Posttranslational Modifications Feng, Baomin; Li, Lianchao; Zhou, Xiaofan Journal of Integrative Plant Biology, Vol. 51, Issue 2 https://doi.org/10.1111/j.1744-7909.2008.00787.x	journal	February 2009
The Ubiquitin 26s Proteasome Proteolytic Pathway Smalle, Jan; Vierstra, Richard D. Annual Review of Plant Biology, Vol. 55, Issue 1 https://doi.org/10.1146/annurev.arplant.55.031903.141801	journal	June 2004
Jasmonic acid perception by COI1 involves inositol polyphosphates in Arabidopsis thaliana: Perception of JA involves inositol polyphosphates Mosblech, Alina; Thurow, Corinna; Gatz, Christiane The Plant Journal, Vol. 65, Issue 6 https://doi.org/10.1111/j.1365-313X.2011.04480.x	journal	February 2011
Modulation of brassinosteroid-regulated gene expression by jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis Yu, X.; Li, L.; Li, L. Proceedings of the National Academy of Sciences, Vol. 105, Issue 21 https://doi.org/10.1073/pnas.0802254105	journal	May 2008
ASK1 physically interacts with COI1 and is required for male fertility inArabidopsis Dai, Liangying; Xu, Linghui; Huang, Dafang Science in China Series C: Life Sciences, Vol. 45, Issue 6 https://doi.org/10.1007/bf02879751	journal	December 2002
The UNUSUAL FLORAL ORGANS gene of Arabidopsis thaliana is an F-box protein required for normal patterning and growth in the floral meristem Samach, Alon; Klenz, Jennifer E.; Kohalmi, Susanne E. The Plant Journal, Vol. 20, Issue 4 https://doi.org/10.1046/j.1365-313x.1999.00617.x	journal	November 1999
Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins Pinon, V.; Etchells, J. P.; Rossignol, P. Development, Vol. 135, Issue 7 https://doi.org/10.1242/dev.016469	journal	February 2008
Regulation of Arabidopsis tapetum development and function by DYSFUNCTIONAL TAPETUM1 (DYT1) encoding a putative bHLH transcription factor Zhang, W. Development, Vol. 133, Issue 16 https://doi.org/10.1242/dev.02463	journal	August 2006
ASK1, a SKP1 homolog, is required for nuclear reorganization, presynaptic homolog juxtaposition and the proper distribution of cohesin during meiosis in Arabidopsis Zhao, Dazhong; Yang, Xiaohui; Quan, Li Plant Molecular Biology, Vol. 62, Issue 1-2 https://doi.org/10.1007/s11103-006-9006-1	journal	August 2006
Ubiquitin ligases mediate growth and development by promoting protein death Stone, Sophia L.; Callis, Judy Current Opinion in Plant Biology, Vol. 10, Issue 6 https://doi.org/10.1016/j.pbi.2007.07.010	journal	December 2007
Disruption of an Arabidopsis cytoplasmic ribosomal protein S13-homologous gene by transposon-mediated mutagenesis causes aberrant growth and development Ito, Takuya; Kim, Gyung-Tae; Shinozaki, Kazuo The Plant Journal, Vol. 22, Issue 3 https://doi.org/10.1046/j.1365-313x.2000.00728.x	journal	May 2000
The bHLH Transcription Factor MYC3 Interacts with the Jasmonate ZIM-Domain Proteins to Mediate Jasmonate Response in Arabidopsis Cheng, Zhiwei; Sun, Li; Qi, Tiancong Molecular Plant, Vol. 4, Issue 2 https://doi.org/10.1093/mp/ssq073	journal	March 2011
Ethylene-Induced Stabilization of ETHYLENE INSENSITIVE3 and EIN3-LIKE1 Is Mediated by Proteasomal Degradation of EIN3 Binding F-Box 1 and 2 That Requires EIN2 in Arabidopsis An, Fengying; Zhao, Qiong; Ji, Yusi The Plant Cell, Vol. 22, Issue 7 https://doi.org/10.1105/tpc.110.076588	journal	July 2010
Auxin regulates SCFTIR1-dependent degradation of AUX/IAA proteins Gray, William M.; Kepinski, Stefan; Rouse, Dean Nature, Vol. 414, Issue 6861 https://doi.org/10.1038/35104500	journal	November 2001
Proteasome system of protein degradation and processing Sorokin, A. V.; Kim, E. R.; Ovchinnikov, L. P. Biochemistry (Moscow), Vol. 74, Issue 13 https://doi.org/10.1134/S000629790913001X	journal	December 2009
Identification and Characterization of Components of a Putative Petunia S -Locus F-Box–Containing E3 Ligase Complex Involved in S-RNase–Based Self-Incompatibility Hua, Zhihua; Kao, Teh-hui The Plant Cell, Vol. 18, Issue 10 https://doi.org/10.1105/tpc.106.041061	journal	October 2006
A Tandem Affinity Tag for Two-step Purification under Fully Denaturing Conditions: Application in Ubiquitin Profiling and Protein Complex Identification Combined with Tagwerker, Christian; Flick, Karin; Cui, Meng Molecular & Cellular Proteomics, Vol. 5, Issue 4 https://doi.org/10.1074/mcp.M500368-MCP200	journal	January 2006
MYC2 Differentially Modulates Diverse Jasmonate-Dependent Functions in Arabidopsis Dombrecht, Bruno; Xue, Gang Ping; Sprague, Susan J. The Plant Cell, Vol. 19, Issue 7 https://doi.org/10.1105/tpc.106.048017	journal	July 2007
SCFFBXO22 Regulates Histone H3 Lysine 9 and 36 Methylation Levels by Targeting Histone Demethylase KDM4A for Ubiquitin-Mediated Proteasomal Degradation Tan, M. -K. M.; Lim, H. -J.; Harper, J. W. Molecular and Cellular Biology, Vol. 31, Issue 18 https://doi.org/10.1128/MCB.05746-11	journal	July 2011
UFO: an Arabidopsis gene involved in both floral meristem and floral organ development. Levin, J. Z.; Meyerowitz, E. M. The Plant Cell, Vol. 7, Issue 5 https://doi.org/10.1105/tpc.7.5.529	journal	May 1995
TheASK1 gene regulates development and interacts with theUFO gene to control floral organ identity inArabidopsis Zhao, Dazhong; Yang, Ming; Solava, James Developmental Genetics, Vol. 25, Issue 3 https://doi.org/10.1002/(SICI)1520-6408(1999)25:3<209::AID-DVG4>3.0.CO;2-O	journal	January 1999
The MKK2 Pathway Mediates Cold and Salt Stress Signaling in Arabidopsis Teige, Markus; Scheikl, Elisabeth; Eulgem, Thomas Molecular Cell, Vol. 15, Issue 1 https://doi.org/10.1016/j.molcel.2004.06.023	journal	July 2004
TheASK1gene regulates B function gene expression in cooperation withUFOandLEAFYinArabidopsis Zhao, Dazhong; Yu, Qilu; Chen, Min Development, Vol. 128, Issue 14 https://doi.org/10.1242/dev.128.14.2735	journal	July 2001

Cited By (4)

Proteomic Analysis of Shoot Tips from Two Alfalfa Cultivars with Different Florescence Sun, Hao; Long, Ruicai; Zhang, Fan Plant Molecular Biology Reporter, Vol. 37, Issue 4 https://doi.org/10.1007/s11105-019-01153-6	journal	July 2019
Differentially expressed proteins associated with drought tolerance in bananas (Musa spp.) Mattos-Moreira, Lorenna Alves; Ferreira, Claudia Fortes; Amorim, Edson Perito Acta Physiologiae Plantarum, Vol. 40, Issue 3 https://doi.org/10.1007/s11738-018-2638-3	journal	February 2018
Arabidopsis SKP1-like protein13 (ASK13) positively regulates seed germination and seedling growth under abiotic stress Rao, Venkateswara; Petla, Bhanu Prakash; Verma, Pooja Journal of Experimental Botany, Vol. 69, Issue 16 https://doi.org/10.1093/jxb/ery191	journal	May 2018
Tackling Plant Meiosis: From Model Research to Crop Improvement Lambing, Christophe; Heckmann, Stefan Frontiers in Plant Science, Vol. 9 https://doi.org/10.3389/fpls.2018.00829	journal	June 2018

Similar Records

Inhibition of SCF ubiquitin ligases by engineered ubiquitin variants that target the Cul1 binding site on the Skp1–F-box interface

Journal Article · Mon Mar 14 00:00:00 EDT 2016 · Proceedings of the National Academy of Sciences of the United States of America · OSTI ID:1252725

Gorelik, Maryna; Orlicky, Stephen; Sartori, Maria A.; +8 more

Protein Kinase R Degradation Is Essential for Rift Valley Fever Virus Infection and Is Regulated by SKP1-CUL1-F-box (SCF)FBXW11-NSs E3 Ligase

Journal Article · Tue Feb 02 00:00:00 EST 2016 · PLoS Pathogens · OSTI ID:1252725

Mudhasani, Rajini; Tran, Julie P.; Retterer, Cary; +3 more

PIL5 represses floral transition in Arabidopsis under long day conditions

Journal Article · Tue May 15 00:00:00 EDT 2018 · Biochemical and Biophysical Research Communications · OSTI ID:1252725

Wu, Minjie; Liu, Dongdong; Abdul, Wakeel; +6 more

Related Subjects

60 APPLIED LIFE SCIENCES
Arabidopsis
ASK1
E3 ubiquitin ligase
mass spectrometry
protein degradation
proteomics
transcriptomics

Title: Proteomics and transcriptomics analyses of Arabidopsis floral buds uncover important functions of ARABIDOPSIS SKP1-LIKE1

Citation Formats

References (90)

Cited By (4)

Similar Records

Related Subjects