skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Enhancing protein stability with extended disulfide bonds

Journal Article · · Proceedings of the National Academy of Sciences of the United States of America
 [1];  [1];  [1];  [1];  [1];  [1];  [2];  [3]
  1. Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037,
  2. California Institute for Biomedical Research , La Jolla, CA 92037
  3. Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037,, California Institute for Biomedical Research , La Jolla, CA 92037

Disulfide bonds play an important role in protein folding and stability. However, the cross-linking of sites within proteins by cysteine disulfides has significant distance and dihedral angle constraints. In this paper, we report the genetic encoding of noncanonical amino acids containing long side-chain thiols that are readily incorporated into both bacterial and mammalian proteins in good yields and with excellent fidelity. These amino acids can pair with cysteines to afford extended disulfide bonds and allow cross-linking of more distant sites and distinct domains of proteins. To demonstrate this notion, we preformed growth-based selection experiments at nonpermissive temperatures using a library of random β-lactamase mutants containing these noncanonical amino acids. A mutant enzyme that is cross-linked by one such extended disulfide bond and is stabilized by ~9 °C was identified. Finally, this result indicates that an expanded set of building blocks beyond the canonical 20 amino acids can lead to proteins with improved properties by unique mechanisms, distinct from those possible through conventional mutagenesis schemes.

Research Organization:
Scripps Research Inst., La Jolla, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
Grant/Contract Number:
SC0011787
OSTI ID:
1252319
Alternate ID(s):
OSTI ID: 1347591
Journal Information:
Proceedings of the National Academy of Sciences of the United States of America, Journal Name: Proceedings of the National Academy of Sciences of the United States of America Vol. 113 Journal Issue: 21; ISSN 0027-8424
Publisher:
Proceedings of the National Academy of SciencesCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 102 works
Citation information provided by
Web of Science

References (36)

TEM1 β-lactamase structure solved by molecular replacement and refined structure of the S235A mutant journal September 1995
MODIP revisited: re-evaluation and refinement of an automated procedure for modeling of disulfide bonds in proteins journal March 2003
Evolution of cyclic peptide protease inhibitors journal June 2011
Disulfide bond isomerization in prokaryotes journal April 2008
Mechanism of stabilization of Bacillus circulans xylanase upon the introduction of disulfide bonds journal February 2007
Site-Specific Incorporation of ε-N-Crotonyllysine into Histones journal June 2012
New Water-Soluble Phosphines as Reductants of Peptide and Protein Disulfide Bonds:  Reactivity and Membrane Permeability journal December 2004
Genetic Incorporation of ε- N -2-Hydroxyisobutyryl-lysine into Recombinant Histones journal April 2015
Designing logical codon reassignment – Expanding the chemistry in biology journal January 2015
Enhancing thermostability of a Rhizomucor miehei lipase by engineering a disulfide bond and displaying on the yeast cell surface journal June 2009
Contribution of Disulfide Bridges to the Thermostability of a Type A Feruloyl Esterase from Aspergillus usamii journal May 2015
Genetically Encoding an Electrophilic Amino Acid for Protein Stapling and Covalent Binding to Native Receptors journal July 2014
Addicting diverse bacteria to a noncanonical amino acid journal January 2016
Protein disulfide engineering journal November 2013
Engineering a Disulfide Bond in the Lid Hinge Region of Rhizopus chinensis Lipase: Increased Thermostability and Altered Acyl Chain Length Specificity journal October 2012
Adding an unnatural covalent bond to proteins through proximity-enhanced bioreactivity journal August 2013
Disulfide Bond Dihedral Angles from Raman Spectroscopy journal September 1973
Stabilization of phage T4 lysozyme by engineered disulfide bonds journal September 1989
Disulphide bridges in globular proteins journal September 1981
Disulfide Bond Acquisition through Eukaryotic Protein Evolution journal July 2010
Disulfide by Design 2.0: a web-based tool for disulfide engineering in proteins journal December 2013
Enhancing the Thermostability of a Cold-Active Lipase from Penicillium cyclopium by In Silico Design of a Disulfide Bridge journal May 2014
Structural Perturbation and Compensation by Directed Evolution at Physiological Temperature Leads to Thermostabilization of β-Lactamase journal September 2005
Improving Trichoderma reesei Cel7B Thermostability by Targeting the Weak Spots journal September 2014
The human protein disulphide isomerase family: substrate interactions and functional properties journal January 2005
Development of thermostable Candida antarctica lipase B through novel in silico design of disulfide bridge journal November 2011
Disulfide bonds as switches for protein function journal April 2003
Adding New Chemistries to the Genetic Code journal June 2010
Proximity-Enabled Protein Crosslinking through Genetically Encoding Haloalkane Unnatural Amino Acids journal January 2014
Exploring the potential impact of an expanded genetic code on protein function journal May 2015
Evolution of an Antibiotic Resistance Enzyme Constrained by Stability and Activity Trade-offs journal June 2002
Disulfide Bonding in Protein Biophysics journal June 2012
A Genetically Encoded aza-Michael Acceptor for Covalent Cross-Linking of Protein–Receptor Complexes journal May 2014
Multiple Global Suppressors of Protein Stability Defects Facilitate the Evolution of Extended-Spectrum TEM β-Lactamases journal December 2010
Site-directed mutagenesis of an Aspergillus niger xylanase B and its expression, purification and enzymatic characterization in Pichia pastoris journal January 2010
Engineering a de novo internal disulfide bridge to improve the thermal stability of xylanase from Bacillus stearothermophilus No. 236 journal January 2007

Similar Records

Protein engineering of subtilisin BPN': enhanced stabilization through the introduction of two cysteines to form a disulfide bond
Journal Article · Tue Apr 21 00:00:00 EDT 1987 · Biochemistry; (United States) · OSTI ID:1252319

Exploring the potential impact of an expanded genetic code on protein function
Journal Article · Mon May 18 00:00:00 EDT 2015 · Proceedings of the National Academy of Sciences of the United States of America · OSTI ID:1252319

Structure of conkunitzin-S1, a neurotoxin and Kunitz-fold disulfide variant from cone snail
Journal Article · Fri Sep 01 00:00:00 EDT 2006 · Acta Crystallographica. Section D: Biological Crystallography · OSTI ID:1252319