Crystal Structure and Proteomics Analysis of Empty Virus-like Particles of Cowpea Mosaic Virus

Huynh, Nhung T.; Hesketh, Emma L.; Saxena, Pooja; Meshcheriakova, Yulia; Ku, You-Chan; Hoang, Linh T.; Johnson, John E.; Ranson, Neil A.; Lomonossoff, George P.; Reddy, Vijay S.

doi:10.1016/j.str.2016.02.011

Title: Crystal Structure and Proteomics Analysis of Empty Virus-like Particles of Cowpea Mosaic Virus

Journal Article · Fri Apr 01 00:00:00 EDT 2016 · Structure

DOI:https://doi.org/10.1016/j.str.2016.02.011· OSTI ID:1349764

Huynh, Nhung T.; Hesketh, Emma L.; Saxena, Pooja; Meshcheriakova, Yulia; Ku, You-Chan; Hoang, Linh T.; Johnson, John E.; Ranson, Neil A.; Lomonossoff, George P.; Reddy, Vijay S.

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Research Organization:: Argonne National Laboratory (ANL), Argonne, IL (United States)

Sponsoring Organization:: USDOE; National Institutes of Health (NIH)

Grant/Contract Number:: AC02-06CH11357; AI070771; Y1-CO-1020; Y1-GN-11040

OSTI ID:: 1349764

Alternate ID(s):: OSTI ID: 1245882; OSTI ID: 1337425

Journal Information:: Structure, Journal Name: Structure Vol. 24 Journal Issue: 4; ISSN 0969-2126

Publisher:: ElsevierCopyright Statement

Country of Publication:: United Kingdom

Language:: English

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Cited by: 21 works

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References (42)

Type I Signal Peptidase and Protein Secretion in Staphylococcus epidermidis Powers, M. E.; Smith, P. A.; Roberts, T. C. Journal of Bacteriology, Vol. 193, Issue 2 https://doi.org/10.1128/JB.01052-10	journal	November 2010
Cowpea Mosaic Virus for Material Fabrication: Addressable Carboxylate Groups on a Programmable Nanoscaffold Steinmetz, Nicole F.; Lomonossoff, George P.; Evans, David J. Langmuir, Vol. 22, Issue 8 https://doi.org/10.1021/la060078e	journal	April 2006
Fitting molecular fragments into electron density Cowtan, Kevin Acta Crystallographica Section D Biological Crystallography, Vol. 64, Issue 1 https://doi.org/10.1107/S0907444907033938	journal	December 2007
The significance of the coat protein in infection by the electrophoretic forms of cowpea mosaic virus Niblett, C. L.; Semancik, J. S. Virology, Vol. 41, Issue 2 https://doi.org/10.1016/0042-6822(70)90072-3	journal	June 1970
Virus-Templated Silica Nanoparticles Steinmetz, Nicole F.; Shah, Sachin N.; Barclay, J. Elaine Small, Vol. 5, Issue 7 https://doi.org/10.1002/smll.200801348	journal	April 2009
Interior Engineering of a Viral Nanoparticle and Its Tumor Homing Properties Wen, Amy M.; Shukla, Sourabh; Saxena, Pooja Biomacromolecules, Vol. 13, Issue 12 https://doi.org/10.1021/bm301278f	journal	November 2012
Decoration of Cowpea Mosaic Virus with Multiple, Redox-Active, Organometallic Complexes Steinmetz, Nicole F.; Lomonossoff, George P.; Evans, David. J. Small, Vol. 2, Issue 4 https://doi.org/10.1002/smll.200500453	journal	April 2006
A virus-based nanoplasmonic structure as a surface-enhanced Raman biosensor Lebedev, Nikolai; Griva, Igor; Dressick, Walter J. Biosensors and Bioelectronics, Vol. 77 https://doi.org/10.1016/j.bios.2015.09.032	journal	March 2016
The Refined Crystal Structure of Cowpea Mosaic Virus at 2.8 Å Resolution Lin, Tianwei; Chen, Zhongguo; Usha, Ramakrishnan Virology, Vol. 265, Issue 1 https://doi.org/10.1006/viro.1999.0038	journal	December 1999
Genetic Engineering and Characterization of Cowpea Mosaic Virus Empty Virus-Like Particles Sainsbury, Frank; Saxena, Pooja; Aljabali, Alaa A. A. Virus Hybrids as Nanomaterials. Methods in Molecular Biology https://doi.org/10.1007/978-1-62703-751-8_11	book	October 2013
Features and development of Coot Emsley, P.; Lohkamp, B.; Scott, W. G. Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 4 https://doi.org/10.1107/S0907444910007493	journal	March 2010
Mechanisms of assembly and genome packaging in an RNA virus revealed by high-resolution cryo-EM Hesketh, Emma L.; Meshcheriakova, Yulia; Dent, Kyle C. Nature Communications, Vol. 6, Issue 1 https://doi.org/10.1038/ncomms10113	journal	December 2015
The infectivity of the two electrophoretic forms of cowpea mosaic virus Geelen, J. L. M. C.; Rezelman, G.; Van Kammen, A. Virology, Vol. 51, Issue 2 https://doi.org/10.1016/0042-6822(73)90428-5	journal	February 1973
Conversion of the electrophoretic forms of cowpea mosaic virus in vivo and in vitro Niblett, C. L.; Semancik, J. S. Virology, Vol. 38, Issue 4 https://doi.org/10.1016/0042-6822(69)90187-1	journal	August 1969
Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination Brünger, A. T.; Adams, P. D.; Clore, G. M. Acta Crystallographica Section D Biological Crystallography, Vol. 54, Issue 5 https://doi.org/10.1107/S0907444998003254	journal	September 1998
Efficient generation of cowpea mosaicvirus empty virus-like particles by the proteolytic processing of precursors in insect cells and plants Saunders, Keith; Sainsbury, Frank; Lomonossoff, George P. Virology, Vol. 393, Issue 2 https://doi.org/10.1016/j.virol.2009.08.023	journal	October 2009
STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins Heinig, M.; Frishman, D. Nucleic Acids Research, Vol. 32, Issue Web Server https://doi.org/10.1093/nar/gkh429	journal	July 2004
Chemically-coupled-peptide-promoted virus nanoparticle templated mineralization Aljabali, Alaa A. A.; Shah, Sachin N.; Evans-Gowing, Richard Integr. Biol., Vol. 3, Issue 2 https://doi.org/10.1039/C0IB00056F	journal	January 2011
Surface-exposed C-terminal amino acids of the small coat protein of Cowpea mosaic virus are required for suppression of silencing Cañizares, M. Carmen; Taylor, Kathryn M.; Lomonossoff, George P. Journal of General Virology, Vol. 85, Issue 11 https://doi.org/10.1099/vir.0.80454-0	journal	November 2004
Controlled immobilisation of active enzymes on the cowpea mosaic virus capsid Aljabali, Alaa A. A.; Barclay, J. Elaine; Steinmetz, Nicole F. Nanoscale, Vol. 4, Issue 18 https://doi.org/10.1039/c2nr31485a	journal	January 2012
The 2.3-Angstrom Structure of Porcine Circovirus 2 Khayat, R.; Brunn, N.; Speir, J. A. Journal of Virology, Vol. 85, Issue 15 https://doi.org/10.1128/JVI.00737-11	journal	June 2011
PROCHECK: a program to check the stereochemical quality of protein structures Laskowski, R. A.; MacArthur, M. W.; Moss, D. S. Journal of Applied Crystallography, Vol. 26, Issue 2 https://doi.org/10.1107/S0021889892009944	journal	April 1993
Redox-active ferrocene-modified Cowpea mosaic virus nanoparticles Aljabali, Alaa A. A.; Barclay, J. Elaine; Butt, Julea N. Dalton Transactions, Vol. 39, Issue 32 https://doi.org/10.1039/c0dt00495b	journal	January 2010
Improved methods for building protein models in electron density maps and the location of errors in these models Jones, T. A.; Zou, J. Y.; Cowan, S. W. Acta Crystallographica Section A Foundations of Crystallography, Vol. 47, Issue 2, p. 110-119 https://doi.org/10.1107/S0108767390010224	journal	March 1991
Development of Cowpea Mosaic Virus as a High-Yielding System for the Presentation of Foreign Peptides Porta, Claudine; Spall, Valerie E.; Loveland, Jane Virology, Vol. 202, Issue 2 https://doi.org/10.1006/viro.1994.1417	journal	August 1994
Environmentally benign synthesis of virus-templated, monodisperse, iron-platinum nanoparticles Shah, Sachin N.; Steinmetz, Nicole F.; Aljabali, Alaa A. A. Dalton Transactions, Issue 40 https://doi.org/10.1039/b906847c	journal	January 2009
Structure determination of bacteriophage PP7 from Pseudomonas aeruginosa : from poor data to a good map Tars, Kaspars; Fridborg, Kerstin; Bundule, Maija Acta Crystallographica Section D Biological Crystallography, Vol. 56, Issue 4 https://doi.org/10.1107/S0907444900001232	journal	April 2000
CPMV-DOX Delivers Aljabali, Alaa A. A.; Shukla, Sourabh; Lomonossoff, George P. Molecular Pharmaceutics, Vol. 10, Issue 1 https://doi.org/10.1021/mp3002057	journal	August 2012
The Cleavable Carboxyl-Terminus of the Small Coat Protein of Cowpea Mosaic Virus Is Involved in RNA Encapsidation Taylor, Kathryn M.; Spall, Valerie E.; Jonathan, P. Virology, Vol. 255, Issue 1 https://doi.org/10.1006/viro.1998.9567	journal	March 1999
Scaling and assessment of data quality Evans, Philip Acta Crystallographica Section D Biological Crystallography, Vol. 62, Issue 1, p. 72-82 https://doi.org/10.1107/S0907444905036693	journal	December 2005
Recent advances of Cowpea mosaic virus-based particle technology Montague, Nicholas P.; Thuenemann, Eva C.; Saxena, Pooja Human Vaccines, Vol. 7, Issue 3 https://doi.org/10.4161/hv.7.3.14989	journal	March 2011
Peptide-Controlled Access to the Interior Surface of Empty Virus Nanoparticles Sainsbury , Frank; Saunders, Keith; Aljabali, Alaa A. A. ChemBioChem, Vol. 12, Issue 16 https://doi.org/10.1002/cbic.201100482	journal	September 2011
The Three-Dimensional Structure of Bacteriophage PP7 from Pseudomonas aeruginosa at 3.7-Å Resolution Tars, Kaspars; Fridborg, Kerstin; Bundule, Maija Virology, Vol. 272, Issue 2 https://doi.org/10.1006/viro.2000.0373	journal	July 2000
The CCP4 suite programs for protein crystallography Acta Crystallographica Section D Biological Crystallography, Vol. 50, Issue 5, p. 760-763 https://doi.org/10.1107/S0907444994003112	journal	September 1994
Expression of an Animal Virus Antigenic Site on the Surface of a Plant Virus Particle Usha, Ramakrishnan; Rohll, Jonathan B.; Spall, Valerie E. Virology, Vol. 197, Issue 1 https://doi.org/10.1006/viro.1993.1598	journal	November 1993
Satellite tobacco mosaic virus refined to 1.4 Å resolution Larson, Steven B.; Day, John S.; McPherson, Alexander Acta Crystallographica Section D Biological Crystallography, Vol. 70, Issue 9 https://doi.org/10.1107/S1399004714013789	journal	August 2014
UCSF Chimera?A visualization system for exploratory research and analysis Pettersen, Eric F.; Goddard, Thomas D.; Huang, Conrad C. Journal of Computational Chemistry, Vol. 25, Issue 13 https://doi.org/10.1002/jcc.20084	journal	January 2004
[20] Processing of X-ray diffraction data collected in oscillation mode Otwinowski, Zbyszek; Minor, Wladek Macromolecular Crystallography Part A, 307-326 https://doi.org/10.1016/S0076-6879(97)76066-X	book	January 1997
Scalable web services for the PSIPRED Protein Analysis Workbench Buchan, Daniel W. A.; Minneci, Federico; Nugent, Tim C. O. Nucleic Acids Research, Vol. 41, Issue W1 https://doi.org/10.1093/nar/gkt381	journal	June 2013
Plant–derived vaccine protects target animals against a viral disease Dalsgaard, Kristian; Uttenthal, Åse; Jones, Tim D. Nature Biotechnology, Vol. 15, Issue 3 https://doi.org/10.1038/nbt0397-248	journal	March 1997
Systemic trafficking of plant virus nanoparticles in mice via the oral route Rae, Chris S.; Wei Khor, Ing; Wang, Qian Virology, Vol. 343, Issue 2 https://doi.org/10.1016/j.virol.2005.08.017	journal	December 2005
Phaser crystallographic software McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D. Journal of Applied Crystallography, Vol. 40, Issue 4 https://doi.org/10.1107/S0021889807021206	journal	July 2007

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59 BASIC BIOLOGICAL SCIENCES
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Title: Crystal Structure and Proteomics Analysis of Empty Virus-like Particles of Cowpea Mosaic Virus

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