Evolution of CD8 + T Cell Immunity and Viral Escape Following Acute HIV-1 Infection
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New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
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March 2010 |
Quantification of infectious HIV-1 plasma viral load using a boosted in vitro infection protocol
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August 2004 |
Impact of immune escape mutations on HIV-1 fitness in the context of the cognate transmitted/founder genome
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January 2012 |
A Novel Antiviral Intervention Results in More Accurate Assessment of Human Immunodeficiency Virus Type 1 Replication Dynamics and T-Cell Decay In Vivo
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April 2003 |
Relationships between Infectious Titer, Capsid Protein Levels, and Reverse Transcriptase Activities of Diverse Human Immunodeficiency Virus Type 1 Isolates
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September 2004 |
HIV reservoir size and persistence are driven by T cell survival and homeostatic proliferation
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June 2009 |
Estimation of the Initial Viral Growth Rate and Basic Reproductive Number during Acute HIV-1 Infection
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March 2010 |
The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates
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April 2014 |
Late escape from an immunodominant cytotoxic T lymphocyte response associated with progression to AIDS
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May 1997 |
Modeling HIV persistence, the latent reservoir, and viral blips
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September 2009 |
Quantifying Residual HIV-1 Replication in Patients Receiving Combination Antiretroviral Therapy
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May 1999 |
HIV Latency
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September 2011 |
Stochastic Simulations Suggest that HIV-1 Survives Close to Its Error Threshold
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September 2012 |
Early Low-Titer Neutralizing Antibodies Impede HIV-1 Replication and Select for Virus Escape
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May 2012 |
Reduced evolutionary rates in HIV-1 reveal extensive latency periods among replicating lineages
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October 2014 |
Determination of virus burst size in vivo using a single-cycle SIV in rhesus macaques
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November 2007 |
Quantitative Image Analysis of HIV-1 Infection in Lymphoid Tissue
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November 1996 |
Modeling Plasma Virus Concentration during Primary HIV Infection
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April 2000 |
Recent Origin of Human Immunodeficiency Virus Type 1 Variants in Resting CD4 + T Lymphocytes in Untreated and Suboptimally Treated Subjects
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December 2001 |
Within-host and between-host evolutionary rates across the HIV-1 genome
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May 2013 |
Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
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May 2008 |
Transmission of Single and Multiple Viral Variants in Primary HIV-1 Subtype C Infection
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February 2011 |
Fitness Costs and Diversity of the Cytotoxic T Lymphocyte (CTL) Response Determine the Rate of CTL Escape during Acute and Chronic Phases of HIV Infection
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August 2011 |
High Rate of Recombination throughout the Human Immunodeficiency Virus Type 1 Genome
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February 2000 |
Predicting the outcomes of treatment to eradicate the latent reservoir for HIV-1
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August 2014 |
Taking Multiple Infections of Cells and Recombination into Account Leads to Small Within-Host Effective-Population-Size Estimates of HIV-1
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January 2011 |
Human Immunodeficiency Virus Type 1 Recombination: Rate, Fidelity, and Putative Hot Spots
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November 2002 |
Autologous Neutralizing Humoral Immunity and Evolution of the Viral Envelope in the Course of Subtype B Human Immunodeficiency Virus Type 1 Infection
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June 2008 |
Modeling Latently Infected Cell Activation: Viral and Latent Reservoir Persistence, and Viral Blips in HIV-infected Patients on Potent Therapy
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October 2009 |
Determination of Infectious Retrovirus Concentration from Colony-Forming Assay with Quantitative Analysis
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May 2003 |
Rapid evolution of the neutralizing antibody response to HIV type 1 infection
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March 2003 |
Recombination increases human immunodeficiency virus fitness, but not necessarily diversity
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June 2008 |
Long-term follow-up studies confirm the stability of the latent reservoir for HIV-1 in resting CD4+ T cells
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May 2003 |
Treatment-Mediated Alterations in HIV Fitness Preserve CD4+ T Cell Counts but Have Minimal Effects on Viral Load
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November 2010 |
Antibody neutralization and escape by HIV-1
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March 2003 |
Quantification of latent tissue reservoirs and total body viral load in HIV-1 infection
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May 1997 |
Latent infection of CD4+ T cells provides a mechanism for lifelong persistence of HIV-1, even in patients on effective combination therapy
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May 1999 |
Autologous Neutralizing Antibodies to the Transmitted/Founder Viruses Emerge Late after Simian Immunodeficiency Virus SIVmac251 Infection of Rhesus Monkeys
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March 2010 |
Stochastic Theory of Early Viral Infection: Continuous versus Burst Production of Virions
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February 2011 |
New insights into the evolutionary rate of HIV-1 at the within-host and epidemiological levels
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May 2012 |
Forward Mutation Rate of Human Immunodeficiency Virus Type 1 in a T Lymphoid Cell Line*
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March 1996 |
Single Cell Analysis of Lymph Node Tissue from HIV-1 Infected Patients Reveals that the Majority of CD4+ T-cells Contain One HIV-1 DNA Molecule
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June 2013 |
APE: Analyses of Phylogenetics and Evolution in R language
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January 2004 |
Estimating the fraction of progeny virions that must incorporate APOBEC3G for suppression of productive HIV-1 infection
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January 2014 |
Viral and Latent Reservoir Persistence in HIV-1–Infected Patients on Therapy
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January 2006 |
Immediate antiviral therapy appears to restrict resting CD4+ cell HIV-1 infection without accelerating the decay of latent infection
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May 2012 |
Impact of Multi-Targeted Antiretroviral Treatment on Gut T Cell Depletion and HIV Reservoir Seeding during Acute HIV Infection
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March 2012 |
HIV-1 transcription and latency: an update
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June 2013 |
Consistent Viral Evolutionary Changes Associated with the Progression of Human Immunodeficiency Virus Type 1 Infection
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December 1999 |
Tempo and mode of nucleotide substitutions in gag and env gene fragments in human immunodeficiency virus type 1 populations with a known transmission history.
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journal
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January 1997 |
Rapid seeding of the viral reservoir prior to SIV viraemia in rhesus monkeys
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journal
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July 2014 |
Viral and Latent Reservoir Persistence in HIV-1 Infected Patients on Therapy
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journal
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January 2005 |
Immediate antiviral therapy appears to restrict resting CD4 + cell HIV-1 infection without accelerating the decay of latent infection
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text
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January 2012 |
Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
- F., Salazar-Gonzalez, Jesus; P., Busch, Michael; S., Perelson, Alan
-
The University of North Carolina at Chapel Hill University Libraries
https://doi.org/10.17615/f6s9-vz03
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text
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January 2008 |
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
|
text
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January 2010 |
Immediate antiviral therapy appears to restrict resting CD4+ cell HIV-1 infection without accelerating the decay of latent infection
|
text
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January 2012 |
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
|
text
|
January 2010 |
Predicting the outcomes of treatment to eradicate the latent reservoir for HIV-1
|
text
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January 2014 |
Late escape from an immunodominant cytotoxic T-lymphocyte response associated with progression to AIDS
|
journal
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February 1997 |