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Title: Edge Bioinformatics

Edge Bioinformatics is a developmental bioinformatics and data management platform which seeks to supply laboratories with bioinformatics pipelines for analyzing data associated with common samples case goals. Edge Bioinformatics enables sequencing as a solution and forward-deployed situations where human-resources, space, bandwidth, and time are limited. The Edge bioinformatics pipeline was designed based on following USE CASES and specific to illumina sequencing reads. 1. Assay performance adjudication (PCR): Analysis of an existing PCR assay in a genomic context, and automated design of a new assay to resolve conflicting results; 2. Clinical presentation with extreme symptoms: Characterization of a known pathogen or co-infection with a. Novel emerging disease outbreak or b. Environmental surveillance
Authors:
Publication Date:
OSTI Identifier:
1232296
Report Number(s):
Edge Bioinformatics; 003588WKSTN00
R&D Project: LA-CC-14-007; C14048
DOE Contract Number:
AC52-06NA25396
Resource Type:
Software
Software Revision:
00
Software Package Number:
003588
Software Package Contents:
Open Source Software package available from Los Alamos National Laboratory at the following URL: https://github.com/losalamos/edge
Software CPU:
WKSTN
Open Source:
Yes
Source Code Available:
Yes
Research Org:
Los Alamos National Laboratory
Sponsoring Org:
USDOE
Country of Publication:
United States

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