Compare Gene Profiles
Abstract
Compare Gene Profiles (CGP) performs pairwise gene content comparisons among a relatively large set of related bacterial genomes. CGP performs pairwise BLAST among gene calls from a set of input genome and associated annotation files, and combines the results to generate lists of common genes, unique genes, homologs, and genes from each genome that differ substantially in length from corresponding genes in the other genomes. CGP is implemented in Python and runs in a Linux environment in serial or parallel mode.
- Publication Date:
- Research Org.:
- Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
- Sponsoring Org.:
- USDOE
- Contributing Org.:
- C. L. Ecale Zhou
- OSTI Identifier:
- 1232077
- Report Number(s):
- CGP; 003362WKSTN00
LLNL-CODE-669632
- DOE Contract Number:
- AC52-07NA27344
- Resource Type:
- Software
- Software Revision:
- 00
- Software Package Number:
- 003362
- Software Package Contents:
- Open Source Software Package available from Lawrence Livermore National Laboratory at the following URL: https://github.com/carolzhou/Genome
- Software CPU:
- WKSTN
- Open Source:
- Yes
- Source Code Available:
- Yes
- Country of Publication:
- United States
Citation Formats
. Compare Gene Profiles.
Computer software. https://www.osti.gov//servlets/purl/1232077. Vers. 00. USDOE. 31 May. 2014.
Web.
. (2014, May 31). Compare Gene Profiles (Version 00) [Computer software]. https://www.osti.gov//servlets/purl/1232077.
. Compare Gene Profiles.
Computer software. Version 00. May 31, 2014. https://www.osti.gov//servlets/purl/1232077.
@misc{osti_1232077,
title = {Compare Gene Profiles, Version 00},
author = {},
abstractNote = {Compare Gene Profiles (CGP) performs pairwise gene content comparisons among a relatively large set of related bacterial genomes. CGP performs pairwise BLAST among gene calls from a set of input genome and associated annotation files, and combines the results to generate lists of common genes, unique genes, homologs, and genes from each genome that differ substantially in length from corresponding genes in the other genomes. CGP is implemented in Python and runs in a Linux environment in serial or parallel mode.},
url = {https://www.osti.gov//servlets/purl/1232077},
doi = {},
url = {https://www.osti.gov/biblio/1232077},
year = {Sat May 31 00:00:00 EDT 2014},
month = {Sat May 31 00:00:00 EDT 2014},
note =
}
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