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Title: Compare Gene Profiles

Abstract

Compare Gene Profiles (CGP) performs pairwise gene content comparisons among a relatively large set of related bacterial genomes. CGP performs pairwise BLAST among gene calls from a set of input genome and associated annotation files, and combines the results to generate lists of common genes, unique genes, homologs, and genes from each genome that differ substantially in length from corresponding genes in the other genomes. CGP is implemented in Python and runs in a Linux environment in serial or parallel mode.

Publication Date:
Research Org.:
Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
Sponsoring Org.:
USDOE
Contributing Org.:
C. L. Ecale Zhou
OSTI Identifier:
1232077
Report Number(s):
CGP; 003362WKSTN00
LLNL-CODE-669632
DOE Contract Number:  
AC52-07NA27344
Resource Type:
Software
Software Revision:
00
Software Package Number:
003362
Software Package Contents:
Open Source Software Package available from Lawrence Livermore National Laboratory at the following URL: https://github.com/carolzhou/Genome
Software CPU:
WKSTN
Open Source:
Yes
Source Code Available:
Yes
Country of Publication:
United States

Citation Formats

. Compare Gene Profiles. Computer software. https://www.osti.gov//servlets/purl/1232077. Vers. 00. USDOE. 31 May. 2014. Web.
. (2014, May 31). Compare Gene Profiles (Version 00) [Computer software]. https://www.osti.gov//servlets/purl/1232077.
. Compare Gene Profiles. Computer software. Version 00. May 31, 2014. https://www.osti.gov//servlets/purl/1232077.
@misc{osti_1232077,
title = {Compare Gene Profiles, Version 00},
author = {},
abstractNote = {Compare Gene Profiles (CGP) performs pairwise gene content comparisons among a relatively large set of related bacterial genomes. CGP performs pairwise BLAST among gene calls from a set of input genome and associated annotation files, and combines the results to generate lists of common genes, unique genes, homologs, and genes from each genome that differ substantially in length from corresponding genes in the other genomes. CGP is implemented in Python and runs in a Linux environment in serial or parallel mode.},
url = {https://www.osti.gov//servlets/purl/1232077},
doi = {},
url = {https://www.osti.gov/biblio/1232077}, year = {Sat May 31 00:00:00 EDT 2014},
month = {Sat May 31 00:00:00 EDT 2014},
note =
}