ProDeGe: A Computational Protocol for fully Automated Decontamination of Genomic Data
The Single Cell Data Decontamination Pipeline is a fully-automated software tool which classifies unscreened contigs from single cell datasets through a combination of homology and feature-based methodologies using the organism's nucleotide sequences and known NCBI taxonomony. The software is freely available to download and install, and can be run on any system.
- Short Name / Acronym:
- WCD WHIMS
- Project Type:
- Open Source, No Publicly Available Repository
- Site Accession Number:
- 5346; 2015-021
- Software Type:
- Scientific
- License(s):
- Other
- Research Organization:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Organization:
- USDOEPrimary Award/Contract Number:AC02-05CH11231
- DOE Contract Number:
- AC02-05CH11231
- Code ID:
- 57180
- OSTI ID:
- 1231928
- Country of Origin:
- United States
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