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Title: Delineation of nuclear structures in 3D multicellular systems

A pipeline, implemented within the Insight Segmentation and Registration Toolkit (ITK) and The Visualization Toolkit (VTK) framework, to delineate each nucleus and to profile morphometric and colony organization. At an abstract level, our approach is an extension of a previously developed method for monolayer call structure models.
Publication Date:
OSTI Identifier:
1231786
Report Number(s):
3D NUCLEAR SEGMENTAT; 003029WKSTN00
R&D Project: L1017; 2014-024
DOE Contract Number:
AC02-05CH11231
Software Revision:
00
Software Package Number:
003029
Software Package Contents:
Open Source Software package available from Lawrence Berkeley National Laboratory at the following URL: https://vision.lbl.gov/Software/3DMorphometry/
Software CPU:
WKSTN
Open Source:
Yes
Source Code Available:
No
Other Software Info:
http://bioinformatics.oxfordjournals.org/content/29/23/3087.long
Related Software:
ITK/VTK/FCL
Research Org:
Lawrence Berkeley National Laboratory
Sponsoring Org:
United States Department of Energy
Contributing Orgs:
Cemal Bilgin, Hang Chang, and Bahram Parvin
Country of Publication:
United States

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