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Title: Complete genome sequencing of a multidrug-resistant and human-invasive Salmonella enterica serovar Typhimurium strain of the emerging sequence type 213 genotype

Journal Article · · Genome Announcements
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  1. Univ. Nacional Autonoma de Mexico, Cuernavaca, Morelos (Mexico)
  2. Hospital Regional de Alta Especialidad de la Peninsula de Yucatan, Merida, Yucatan (Mexico)
  3. San Diego State Univ., San Diego, CA (United States)
  4. San Diego State Univ., San Diego, CA (United States); Argonne National Lab. (ANL), Argonne, IL (United States)

Salmonella enterica subsp. enterica serovar Typhimurium strain YU39 was isolated in 2005 in the state of Yucatán, Mexico, from a human systemic infection. The YU39 strain is representative of the multidrug-resistant emergent sequence type 213 (ST213) genotype. The YU39 complete genome is composed of a chromosome and seven plasmids.

Research Organization:
Argonne National Lab. (ANL), Argonne, IL (United States)
Sponsoring Organization:
USDOE
Grant/Contract Number:
AC02-06CH11357
OSTI ID:
1214576
Journal Information:
Genome Announcements, Vol. 3, Issue 3; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (13)

Integrated Food Chain Surveillance System for Salmonella spp. in Mexico1 journal March 2008
Salmonella Typhimurium ST213 is associated with two types of IncA/C plasmids carrying multiple resistance determinants journal January 2011
Association of virulence plasmid and antibiotic resistance determinants with chromosomal multilocus genotypes in Mexican Salmonella enterica serovar Typhimurium strains journal January 2009
Conjugative transfer of an IncA/C plasmid-borne blaCMY-2 gene through genetic re-arrangements with an IncX1 plasmid journal January 2013
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data journal May 2013
Trimmomatic: a flexible trimmer for Illumina sequence data journal April 2014
Fast and accurate long-read alignment with Burrows–Wheeler transform journal January 2010
The Sequence Alignment/Map format and SAMtools journal June 2009
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement journal November 2014
Next Generation Sequence Assembly with AMOS journal March 2011
Prokka: rapid prokaryotic genome annotation journal March 2014
PHAST: A Fast Phage Search Tool journal June 2011
IslandViewer update: improved genomic island discovery and visualization journal May 2013

Cited By (4)

Phylogenetic analysis revealed that Salmonella Typhimurium ST313 isolated from humans and food in Brazil presented a high genomic similarity journal November 2019
A multi-drug resistant Salmonella Typhimurium ST213 human-invasive strain (33676) containing the bla CMY-2 gene on an IncF plasmid is attenuated for virulence in BALB/c mice journal February 2016
Population analysis of D6-like plasmid prophage variants associated with specific IncC plasmid types in the emerging Salmonella Typhimurium ST213 genotype journal October 2019
Small Klebsiella pneumoniae Plasmids: Neglected Contributors to Antibiotic Resistance journal September 2019