The Human Immunopeptidome Project, a Suggestion for yet another Postgenome Next Big Thing
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August 2011 |
Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation
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January 2015 |
Different binding motifs of the celiac disease-associated HLA molecules DQ2.5, DQ2.2, and DQ7.5 revealed by relative quantitative proteomics of endogenous peptide repertoires
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December 2014 |
Mapping the HLA ligandome landscape of acute myeloid leukemia: a targeted approach toward peptide-based immunotherapy
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August 2014 |
The MHC I immunopeptidome conveys to the cell surface an integrative view of cellular regulation
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January 2011 |
Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system
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October 2013 |
Open Source System for Analyzing, Validating, and Storing Protein Identification Data
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December 2004 |
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
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February 2007 |
Comet: An open-source MS/MS sequence database search tool
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December 2012 |
Using iRT, a normalized retention time for more targeted measurement of peptides
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April 2012 |
Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules
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May 1991 |
The MHC class I peptide repertoire is molded by the transcriptome
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February 2008 |
Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
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January 2012 |
The nature of self for T cells—a systems-level perspective
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June 2015 |
Impact of genomic polymorphisms on the repertoire of human MHC class I-associated peptides
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April 2014 |
Checkpoint blockade cancer immunotherapy targets tumour-specific mutant antigens
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November 2014 |
Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps
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March 2015 |
The Human Leukocyte Antigen–presented Ligandome of B Lymphocytes
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March 2013 |
Characterization of peptides bound to the class I MHC molecule HLA-A2.1 by mass spectrometry
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March 1992 |
Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search
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October 2002 |
A uniform proteomics MS/MS analysis platform utilizing open XML file formats
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January 2005 |
MS-GF+ makes progress towards a universal database search tool for proteomics
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October 2014 |
Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions
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January 2014 |
Accelerating Next-Generation Vaccine Development for Global Disease Prevention
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May 2013 |
Toward a Human Vaccines Project
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June 2014 |
HLA ligandome analysis identifies the underlying specificities of spontaneous antileukemia immune responses in chronic lymphocytic leukemia (CLL)
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December 2014 |
iPortal: the swiss grid proteomics portal: Requirements and new features based on experience and usability considerations
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May 2014 |
Building consensus spectral libraries for peptide identification in proteomics
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September 2008 |
Memory T Cells in Latent Mycobacterium tuberculosis Infection Are Directed against Three Antigenic Islands and Largely Contained in a CXCR3+CCR6+ Th1 Subset
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January 2013 |
Quantitative variability of 342 plasma proteins in a human twin population
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February 2015 |
NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8–11
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May 2008 |
Increased Diversity of the HLA-B40 Ligandome by the Presentation of Peptides Phosphorylated at Their Main Anchor Residue
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December 2013 |
More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC−MS/MS
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April 2011 |
HLA Class I Alleles Are Associated with Peptide-Binding Repertoires of Different Size, Affinity, and Immunogenicity
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November 2013 |
Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions
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May 2012 |
A repository of assays to quantify 10,000 human proteins by SWATH-MS
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September 2014 |
OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data
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March 2014 |
Revisiting the Arthritogenic Peptide Theory: Quantitative Not Qualitative Changes in the Peptide Repertoire of HLA-B27 Allotypes: Unexpected Overlaps in the Binding Specificities of B27 Subtypes
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February 2015 |
A comprehensive analysis of constitutive naturally processed and presented HLA-C*04:01 (Cw4) - specific peptides
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January 2014 |
Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis
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July 2015 |
Biomarkers in Cancer Immunotherapy
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January 2015 |
Reproducible and Consistent Quantification of the Saccharomyces cerevisiae Proteome by SWATH-mass spectrometry
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January 2015 |
iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates
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August 2011 |
Combining Results of Multiple Search Engines in Proteomics
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May 2013 |
Genetic Basis for Clinical Response to CTLA-4 Blockade in Melanoma
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December 2014 |
Automated benchmarking of peptide-MHC class I binding predictions
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February 2015 |
The Proteomics Identifications (PRIDE) database and associated tools: status in 2013
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November 2012 |
Extracellular vesicles from symbiotic vaginal lactobacilli inhibit HIV-1 infection of human tissues
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December 2019 |
Quantitative variability of 342 plasma proteins in a human twin population
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January 2015 |
Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry
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January 2015 |