Enabling membrane protein structure and dynamics with x-ray free electron lasers

Feld, G K; Segelke, B W; Frank, M

doi:10.1016/j.sbi.2014.05.002

Title: Enabling membrane protein structure and dynamics with x-ray free electron lasers

Journal Article · Wed Apr 02 00:00:00 EDT 2014 · Current Opinion in Structural Biology, vol. 27, N/A, June 11, 2014, pp. 69-78

DOI:https://doi.org/10.1016/j.sbi.2014.05.002· OSTI ID:1149052

Feld, G K; Segelke, B W; Frank, M

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Research Organization:: Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

Sponsoring Organization:: USDOE

DOE Contract Number:: DE-AC52-07NA27344

OSTI ID:: 1149052

Report Number(s):: LLNL-JRNL-652735

Journal Information:: Current Opinion in Structural Biology, vol. 27, N/A, June 11, 2014, pp. 69-78, Journal Name: Current Opinion in Structural Biology, vol. 27, N/A, June 11, 2014, pp. 69-78

Country of Publication:: United States

Language:: English

References (51)

Potential for biomolecular imaging with femtosecond X-ray pulses Neutze, Richard; Wouts, Remco; van der Spoel, David Nature, Vol. 406, Issue 6797 https://doi.org/10.1038/35021099	journal	August 2000
X-ray science: The big guns Waldrop, M. Mitchell Nature, Vol. 505, Issue 7485 https://doi.org/10.1038/505604a	journal	January 2014
Femtosecond X-ray protein nanocrystallography Chapman, Henry N.; Fromme, Petra; Barty, Anton Nature, Vol. 470, Issue 7332, p. 73-77 https://doi.org/10.1038/nature09750	journal	February 2011
High-Resolution Protein Structure Determination by Serial Femtosecond Crystallography Boutet, S.; Lomb, L.; Williams, G. J. Science, Vol. 337, Issue 6092 https://doi.org/10.1126/science.1217737	journal	May 2012
Single mimivirus particles intercepted and imaged with an X-ray laser Seibert, M. Marvin; Ekeberg, Tomas; Maia, Filipe R. N. C. Nature, Vol. 470, Issue 7332 https://doi.org/10.1038/nature09748	journal	February 2011
Imaging live cell in micro-liquid enclosure by X-ray laser diffraction Kimura, Takashi; Joti, Yasumasa; Shibuya, Akemi Nature Communications, Vol. 5, Issue 1 https://doi.org/10.1038/ncomms4052	journal	January 2014
Time-resolved structural studies at synchrotrons and X-ray free electron lasers: opportunities and challenges Neutze, Richard; Moffat, Keith Current Opinion in Structural Biology, Vol. 22, Issue 5 https://doi.org/10.1016/j.sbi.2012.08.006	journal	October 2012
The Coherent X-ray Imaging (CXI) instrument at the Linac Coherent Light Source (LCLS) Boutet, Sébastien; J. Williams, Garth New Journal of Physics, Vol. 12, Issue 3 https://doi.org/10.1088/1367-2630/12/3/035024	journal	March 2010
X-ray lasers for structural and dynamic biology Spence, J. C. H.; Weierstall, U.; Chapman, H. N. Reports on Progress in Physics, Vol. 75, Issue 10 https://doi.org/10.1088/0034-4885/75/10/102601	journal	September 2012
X-ray Free Electron Lasers Motivate Bioanalytical Characterization of Protein Nanocrystals: Serial Femtosecond Crystallography Bogan, Michael J. Analytical Chemistry, Vol. 85, Issue 7 https://doi.org/10.1021/ac303716r	journal	March 2013
Emerging opportunities in structural biology with X-ray free-electron lasers Schlichting, Ilme; Miao, Jianwei Current Opinion in Structural Biology, Vol. 22, Issue 5 https://doi.org/10.1016/j.sbi.2012.07.015	journal	October 2012
A simplified description of X-ray free-electron lasers Margaritondo, G.; Rebernik Ribic, Primoz Journal of Synchrotron Radiation, Vol. 18, Issue 2 https://doi.org/10.1107/S090904951004896X	journal	January 2011
Toward structure determination using membrane–protein nanocrystals and microcrystals Hunter, Mark S.; Fromme, Petra Methods, Vol. 55, Issue 4 https://doi.org/10.1016/j.ymeth.2011.12.006	journal	December 2011
In vivo protein crystallization opens new routes in structural biology Koopmann, Rudolf; Cupelli, Karolina; Redecke, Lars Nature Methods, Vol. 9, Issue 3 https://doi.org/10.1038/nmeth.1859	journal	January 2012
Injector for scattering measurements on fully solvated biospecies Weierstall, U.; Spence, J. C. H.; Doak, R. B. Review of Scientific Instruments, Vol. 83, Issue 3 https://doi.org/10.1063/1.3693040	journal	March 2012
Room temperature femtosecond X-ray diffraction of photosystem II microcrystals Kern, J.; Alonso-Mori, R.; Hellmich, J. Proceedings of the National Academy of Sciences, Vol. 109, Issue 25, p. 9721-9726 https://doi.org/10.1073/pnas.1204598109	journal	June 2012
Simultaneous Femtosecond X-ray Spectroscopy and Diffraction of Photosystem II at Room Temperature Kern, J.; Alonso-Mori, R.; Tran, R. Science, Vol. 340, Issue 6131 https://doi.org/10.1126/science.1234273	journal	February 2013
Serial femtosecond X-ray diffraction of 30S ribosomal subunit microcrystals in liquid suspension at ambient temperature using an X-ray free-electron laser Demirci, Hasan; Sierra, Raymond G.; Laksmono, Hartawan Acta Crystallographica Section F Structural Biology and Crystallization Communications, Vol. 69, Issue 9 https://doi.org/10.1107/S174430911302099X	journal	August 2013
Nanoflow electrospinning serial femtosecond crystallography Sierra, Raymond G.; Laksmono, Hartawan; Kern, Jan Acta Crystallographica Section D Biological Crystallography, Vol. 68, Issue 11, p. 1584-1587 https://doi.org/10.1107/S0907444912038152	journal	October 2012
Lipidic cubic phase technologies for membrane protein structural studies Cherezov, Vadim Current Opinion in Structural Biology, Vol. 21, Issue 4 https://doi.org/10.1016/j.sbi.2011.06.007	journal	August 2011
Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography Weierstall, Uwe; James, Daniel; Wang, Chong Nature Communications, Vol. 5, Issue 1 https://doi.org/10.1038/ncomms4309	journal	February 2014
Serial Femtosecond Crystallography of G Protein-Coupled Receptors Liu, W.; Wacker, D.; Gati, C. Science, Vol. 342, Issue 6165 https://doi.org/10.1126/science.1244142	journal	December 2013
Mechanisms, kinetics, impurities and defects: consequences in macromolecular crystallization McPherson, Alexander; Kuznetsov, Yurii G. Acta Crystallographica Section F Structural Biology Communications, Vol. 70, Issue 4 https://doi.org/10.1107/S2053230X14004816	journal	March 2014
Accessing protein conformational ensembles using room-temperature X-ray crystallography Fraser, J. S.; van den Bedem, H.; Samelson, A. J. Proceedings of the National Academy of Sciences, Vol. 108, Issue 39 https://doi.org/10.1073/pnas.1111325108	journal	September 2011
Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR Fenwick, R. B.; van den Bedem, H.; Fraser, J. S. Proceedings of the National Academy of Sciences, Vol. 111, Issue 4 https://doi.org/10.1073/pnas.1323440111	journal	January 2014
Structural Features for Functional Selectivity at Serotonin Receptors Wacker, D.; Wang, C.; Katritch, V. Science, Vol. 340, Issue 6132 https://doi.org/10.1126/science.1232808	journal	March 2013
Self-terminating diffraction gates femtosecond X-ray nanocrystallography measurements Barty, Anton; Caleman, Carl; Aquila, Andrew Nature Photonics, Vol. 6, Issue 1 https://doi.org/10.1038/nphoton.2011.297	journal	December 2011
Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser Lomb, Lukas; Barends, Thomas R. M.; Kassemeyer, Stephan Physical Review B, Vol. 84, Issue 21 https://doi.org/10.1103/PhysRevB.84.214111	journal	December 2011
Pathway and mechanism of drug binding to G-protein-coupled receptors Dror, Ron O.; Pan, Albert C.; Arlow, Daniel H. Proceedings of the National Academy of Sciences, Vol. 108, Issue 32 https://doi.org/10.1073/pnas.1104614108	journal	July 2011
Structure and dynamics of the M3 muscarinic acetylcholine receptor Kruse, Andrew C.; Hu, Jianxin; Pan, Albert C. Nature, Vol. 482, Issue 7386 https://doi.org/10.1038/nature10867	journal	February 2012
Crystallography on a chip Zarrine-Afsar, Arash; Barends, Thomas R. M.; Müller, Christina Acta Crystallographica Section D Biological Crystallography, Vol. 68, Issue 3 https://doi.org/10.1107/S0907444911055296	journal	February 2012
Membrane protein structure determination by electron crystallography Ubarretxena-Belandia, Iban; Stokes, David L. Current Opinion in Structural Biology, Vol. 22, Issue 4 https://doi.org/10.1016/j.sbi.2012.04.003	journal	August 2012
Femtosecond X-ray diffraction from two-dimensional protein crystals Frank, Matthias; Carlson, David B.; Hunter, Mark S. IUCrJ, Vol. 1, Issue 2 https://doi.org/10.1107/S2052252514001444	journal	February 2014
7 Å resolution in protein two-dimensional-crystal X-ray diffraction at Linac Coherent Light Source Pedrini, Bill; Tsai, Ching-Ju; Capitani, Guido Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 369, Issue 1647 https://doi.org/10.1098/rstb.2013.0500	journal	July 2014
Electron Crystallography of Bacteriorhodopsin with Millisecond Time Resolution Subramaniam, Sriram; Henderson, Richard Journal of Structural Biology, Vol. 128, Issue 1 https://doi.org/10.1006/jsbi.1999.4178	journal	December 1999
Gating Movement of Acetylcholine Receptor Caught by Plunge-Freezing Unwin, Nigel; Fujiyoshi, Yoshinori Journal of Molecular Biology, Vol. 422, Issue 5 https://doi.org/10.1016/j.jmb.2012.07.010	journal	October 2012
Crystallographic data processing for free-electron laser sources White, Thomas A.; Barty, Anton; Stellato, Francesco Acta Crystallographica Section D Biological Crystallography, Vol. 69, Issue 7 https://doi.org/10.1107/S0907444913013620	journal	June 2013
CrystFEL : a software suite for snapshot serial crystallography White, Thomas A.; Kirian, Richard A.; Martin, Andrew V. Journal of Applied Crystallography, Vol. 45, Issue 2 https://doi.org/10.1107/S0021889812002312	journal	March 2012
Femtosecond protein nanocrystallography—data analysis methods Kirian, Richard A.; Wang, Xiaoyu; Weierstall, Uwe Optics Express, Vol. 18, Issue 6 https://doi.org/10.1364/OE.18.005713	journal	January 2010
New Python-based methods for data processing Sauter, Nicholas K.; Hattne, Johan; Grosse-Kunstleve, Ralf W. Acta Crystallographica Section D Biological Crystallography, Vol. 69, Issue 7 https://doi.org/10.1107/S0907444913000863	journal	June 2013
Anomalous signal from S atoms in protein crystallographic data from an X-ray free-electron laser Barends, Thomas R. M.; Foucar, Lutz; Shoeman, Robert L. Acta Crystallographica Section D Biological Crystallography, Vol. 69, Issue 5 https://doi.org/10.1107/S0907444913002448	journal	April 2013
Time-resolved protein nanocrystallography using an X-ray free-electron laser Aquila, Andrew; Hunter, Mark S.; Doak, R. Bruce Optics Express, Vol. 20, Issue 3 https://doi.org/10.1364/OE.20.002706	journal	January 2012
Lipidic Sponge Phase Crystallization of Membrane Proteins Wadsten, Pia; Wöhri, Annemarie B.; Snijder, Arjan Journal of Molecular Biology, Vol. 364, Issue 1 https://doi.org/10.1016/j.jmb.2006.06.043	journal	November 2006
Lipidic Sponge Phase Crystal Structure of a Photosynthetic Reaction Center Reveals Lipids on the Protein Surface Wöhri, Annemarie B.; Wahlgren, Weixiao Y.; Malmerberg, Erik Biochemistry, Vol. 48, Issue 41 https://doi.org/10.1021/bi900545e	journal	October 2009
Light-Induced Structural Changes in a Photosynthetic Reaction Center Caught by Laue Diffraction Wohri, A. B.; Katona, G.; Johansson, L. C. Science, Vol. 328, Issue 5978 https://doi.org/10.1126/science.1186159	journal	April 2010
Structure of a photosynthetic reaction centre determined by serial femtosecond crystallography Johansson, Linda C.; Arnlund, David; Katona, Gergely Nature Communications, Vol. 4, Issue 1 https://doi.org/10.1038/ncomms3911	journal	December 2013
Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å Umena, Yasufumi; Kawakami, Keisuke; Shen, Jian-Ren Nature, Vol. 473, Issue 7345 https://doi.org/10.1038/nature09913	journal	April 2011
A multi-crystal wavelength dispersive x-ray spectrometer Alonso-Mori, Roberto; Kern, Jan; Sokaras, Dimosthenis Review of Scientific Instruments, Vol. 83, Issue 7 https://doi.org/10.1063/1.4737630	journal	July 2012
Serial crystallography on in vivo grown microcrystals using synchrotron radiation Gati, Cornelius; Bourenkov, Gleb; Klinge, Marco IUCrJ, Vol. 1, Issue 2 https://doi.org/10.1107/S2052252513033939	journal	February 2014
Three-dimensional electron crystallography of protein microcrystals Shi, Dan; Nannenga, Brent L.; Iadanza, Matthew G. eLife, Vol. 2 https://doi.org/10.7554/eLife.01345	journal	November 2013
UCSF Chimera?A visualization system for exploratory research and analysis Pettersen, Eric F.; Goddard, Thomas D.; Huang, Conrad C. Journal of Computational Chemistry, Vol. 25, Issue 13 https://doi.org/10.1002/jcc.20084	journal	January 2004

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