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Title: Continuum electromagnetic gyrokinetic simulations of turbulence in the tokamak scrape-off layer and laboratory devices

Abstract

Here, we present algorithms and results from Gkeyll, a full-f continuum, electromagnetic gyrokinetic code, designed to study turbulence in the edge region of fusion devices. The edge is computationally very challenging, requiring robust algorithms that can handle large-amplitude fluctuations and stable interactions with plasma sheaths. We present an energy-conserving high-order discontinuous Galerkin scheme that solves gyrokinetic equations in Hamiltonian form. Efficiency is improved by a careful choice of basis functions and automatically generated computation kernels. Previous verification tests were performed in the straight-field-line large plasma device [Shi et al., J. Plasma Phys. 83, 905830304 (2017)] and the Texas Helimak, a simple magnetized torus [Bernard et al., Phys. Plasmas 26, 042301 (2019)], including the effect of end-plate biasing on turbulence. Results for the scrape-off layer for NSTX parameters with a model helical magnetic geometry with bad curvature have been obtained [Shi et al., Phys. Plasmas 26, 012307 (2019)]. In this paper, we present algorithms for the two formulations of electromagnetic gyrokinetics: the Hamiltonian and the symplectic. We describe each formulation and show results of benchmark tests. Although our scheme works for the Hamiltonian formulation, the presence of spurious numerical modes for high-β and large $$k^2_⊥ρ^2_s$$ regimes shows that the symplectic formulation is more robust. We then review our recent algorithm for the symplectic formulation [Mandell et al., J. Plasma Phys. 86, 905860109 (2020)], along with example application of this new capability. Maintaining positivity of the distribution function can be challenging, and we describe a new and novel exponential recovery based algorithm to address this.

Authors:
ORCiD logo [1]; ORCiD logo [2]; ORCiD logo [3]; ORCiD logo [4]; ORCiD logo [1]; ORCiD logo [5]
  1. Princeton Plasma Physics Lab. (PPPL), Princeton, NJ (United States)
  2. Princeton Univ., NJ (United States)
  3. General Atomics, San Diego, CA (United States); Univ. of Texas, Austin, TX (United States)
  4. MIT Plasma Science and Fusion Center, Cambridge, MA (United States); Princeton Plasma Physics Lab. (PPPL), Princeton, NJ (United States)
  5. Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
Publication Date:
Research Org.:
Princeton Plasma Physics Laboratory (PPPL), Princeton, NJ (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1668050
Alternate Identifier(s):
OSTI ID: 1608504
Grant/Contract Number:  
FG02-97ER25308; FG02-95ER54309; FG02-04ER-54742; AC02-09CH11466; FC02-08ER54966
Resource Type:
Accepted Manuscript
Journal Name:
Physics of Plasmas
Additional Journal Information:
Journal Volume: 27; Journal Issue: 4; Journal ID: ISSN 1070-664X
Publisher:
American Institute of Physics (AIP)
Country of Publication:
United States
Language:
English
Subject:
70 PLASMA PHYSICS AND FUSION TECHNOLOGY

Citation Formats

Hakim, Ammar H., Mandell, Noah R., Bernard, T. N., Francisquez, M., Hammett, G. W., and Shi, E. L. Continuum electromagnetic gyrokinetic simulations of turbulence in the tokamak scrape-off layer and laboratory devices. United States: N. p., 2020. Web. doi:10.1063/1.5141157.
Hakim, Ammar H., Mandell, Noah R., Bernard, T. N., Francisquez, M., Hammett, G. W., & Shi, E. L. Continuum electromagnetic gyrokinetic simulations of turbulence in the tokamak scrape-off layer and laboratory devices. United States. https://doi.org/10.1063/1.5141157
Hakim, Ammar H., Mandell, Noah R., Bernard, T. N., Francisquez, M., Hammett, G. W., and Shi, E. L. Tue . "Continuum electromagnetic gyrokinetic simulations of turbulence in the tokamak scrape-off layer and laboratory devices". United States. https://doi.org/10.1063/1.5141157. https://www.osti.gov/servlets/purl/1668050.
@article{osti_1668050,
title = {Continuum electromagnetic gyrokinetic simulations of turbulence in the tokamak scrape-off layer and laboratory devices},
author = {Hakim, Ammar H. and Mandell, Noah R. and Bernard, T. N. and Francisquez, M. and Hammett, G. W. and Shi, E. L.},
abstractNote = {Here, we present algorithms and results from Gkeyll, a full-f continuum, electromagnetic gyrokinetic code, designed to study turbulence in the edge region of fusion devices. The edge is computationally very challenging, requiring robust algorithms that can handle large-amplitude fluctuations and stable interactions with plasma sheaths. We present an energy-conserving high-order discontinuous Galerkin scheme that solves gyrokinetic equations in Hamiltonian form. Efficiency is improved by a careful choice of basis functions and automatically generated computation kernels. Previous verification tests were performed in the straight-field-line large plasma device [Shi et al., J. Plasma Phys. 83, 905830304 (2017)] and the Texas Helimak, a simple magnetized torus [Bernard et al., Phys. Plasmas 26, 042301 (2019)], including the effect of end-plate biasing on turbulence. Results for the scrape-off layer for NSTX parameters with a model helical magnetic geometry with bad curvature have been obtained [Shi et al., Phys. Plasmas 26, 012307 (2019)]. In this paper, we present algorithms for the two formulations of electromagnetic gyrokinetics: the Hamiltonian and the symplectic. We describe each formulation and show results of benchmark tests. Although our scheme works for the Hamiltonian formulation, the presence of spurious numerical modes for high-β and large $k^2_⊥ρ^2_s$ regimes shows that the symplectic formulation is more robust. We then review our recent algorithm for the symplectic formulation [Mandell et al., J. Plasma Phys. 86, 905860109 (2020)], along with example application of this new capability. Maintaining positivity of the distribution function can be challenging, and we describe a new and novel exponential recovery based algorithm to address this.},
doi = {10.1063/1.5141157},
journal = {Physics of Plasmas},
number = 4,
volume = 27,
place = {United States},
year = {Tue Apr 07 00:00:00 EDT 2020},
month = {Tue Apr 07 00:00:00 EDT 2020}
}

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Works referenced in this record:

Discontinuous Galerkin algorithms for fully kinetic plasmas
journal, January 2018


Hamiltonian theory of guiding-center motion
journal, May 2009


Finite-β simulation of microinstabilities
journal, February 2014

  • Startsev, Edward A.; Lee, W. W.
  • Physics of Plasmas, Vol. 21, Issue 2
  • DOI: 10.1063/1.4863847

Electron Physics in 3-D Two-Fluid 10-Moment Modeling of Ganymede's Magnetosphere
journal, April 2018

  • Wang, Liang; Germaschewski, Kai; Hakim, Ammar
  • Journal of Geophysical Research: Space Physics, Vol. 123, Issue 4
  • DOI: 10.1002/2017JA024761

Gyrokinetic turbulence simulations with kinetic electrons
journal, May 2001

  • Chen, Yang; Parker, Scott
  • Physics of Plasmas, Vol. 8, Issue 5
  • DOI: 10.1063/1.1351828

Nonlinear Dynamics in the Tokamak Edge
journal, May 2010

  • Scott, B. D.; Kendl, A.; Ribeiro, T.
  • Contributions to Plasma Physics, Vol. 50, Issue 3-5
  • DOI: 10.1002/ctpp.201010039

Continuum kinetic and multi-fluid simulations of classical sheaths
journal, February 2017

  • Cagas, P.; Hakim, A.; Juno, J.
  • Physics of Plasmas, Vol. 24, Issue 2
  • DOI: 10.1063/1.4976544

Temperature-dependent Saturation of Weibel-type Instabilities in Counter-streaming Plasmas
journal, February 2019


A High-Order Discontinuous Galerkin Method for 2D Incompressible Flows
journal, May 2000

  • Liu, Jian-Guo; Shu, Chi-Wang
  • Journal of Computational Physics, Vol. 160, Issue 2
  • DOI: 10.1006/jcph.2000.6475

Model Fokker-Planck Equation for a Plasma and Its Solution
journal, January 1964


A high resolution wave propagation scheme for ideal Two-Fluid plasma equations
journal, November 2006


Effect of a weak ion collisionality on the dynamics of kinetic electrostatic shocks
journal, February 2019

  • Sundström, Andréas; Juno, James; TenBarge, Jason M.
  • Journal of Plasma Physics, Vol. 85, Issue 1
  • DOI: 10.1017/S0022377819000023

Gyrokinetic continuum simulations of plasma turbulence in the Texas Helimak
journal, April 2019

  • Bernard, T. N.; Shi, E. L.; Gentle, K. W.
  • Physics of Plasmas, Vol. 26, Issue 4
  • DOI: 10.1063/1.5085457

Gyrokinetic continuum simulation of turbulence in a straight open-field-line plasma
journal, May 2017


Comparison of multi-fluid moment models with particle-in-cell simulations of collisionless magnetic reconnection
journal, January 2015

  • Wang, Liang; Hakim, Ammar H.; Bhattacharjee, A.
  • Physics of Plasmas, Vol. 22, Issue 1
  • DOI: 10.1063/1.4906063

Three-dimensional computation of drift Alfvén turbulence
journal, October 1997


Electromagnetic full- gyrokinetics in the tokamak edge with discontinuous Galerkin methods
journal, February 2020


Electromagnetic gyrokinetic PIC simulation with an adjustable control variates method
journal, July 2007


Plasma-material boundary conditions for discontinuous Galerkin continuum-kinetic simulations, with a focus on secondary electron emission
journal, April 2020


Global Ten‐Moment Multifluid Simulations of the Solar Wind Interaction with Mercury: From the Planetary Conducting Core to the Dynamic Magnetosphere
journal, November 2019

  • Dong, Chuanfei; Wang, Liang; Hakim, Ammar
  • Geophysical Research Letters, Vol. 46, Issue 21
  • DOI: 10.1029/2019GL083180

Foundations of nonlinear gyrokinetic theory
journal, April 2007


Full- f gyrokinetic simulation of turbulence in a helical open-field-line plasma
journal, January 2019

  • Shi, E. L.; Hammett, G. W.; Stoltzfus-Dueck, T.
  • Physics of Plasmas, Vol. 26, Issue 1
  • DOI: 10.1063/1.5074179

The Serendipity Family of Finite Elements
journal, March 2011

  • Arnold, Douglas N.; Awanou, Gerard
  • Foundations of Computational Mathematics, Vol. 11, Issue 3
  • DOI: 10.1007/s10208-011-9087-3

Maximum-principle-satisfying and positivity-preserving high-order schemes for conservation laws: survey and new developments
journal, May 2011

  • Zhang, Xiangxiong; Shu, Chi-Wang
  • Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 467, Issue 2134
  • DOI: 10.1098/rspa.2011.0153

Simulations of anti-parallel reconnection using a nonlocal heat flux closure
journal, August 2017

  • Ng, Jonathan; Hakim, Ammar; Bhattacharjee, A.
  • Physics of Plasmas, Vol. 24, Issue 8
  • DOI: 10.1063/1.4993195

Runge-Kutta Discontinuous Galerkin Methods for Convection-Dominated Problems
journal, September 2001

  • Cockburn, Bernardo; Shu, Chi-Wang
  • Journal of Scientific Computing, Vol. 16, Issue 3, p. 173-261
  • DOI: 10.1023/A:1012873910884

Intermittent convective transport carried by propagating electromagnetic filamentary structures in nonuniformly magnetized plasma
journal, February 2010

  • Xu, G. S.; Naulin, V.; Fundamenski, W.
  • Physics of Plasmas, Vol. 17, Issue 2
  • DOI: 10.1063/1.3302535

Nonlinear saturation of the Weibel instability
journal, November 2017

  • Cagas, P.; Hakim, A.; Scales, W.
  • Physics of Plasmas, Vol. 24, Issue 11
  • DOI: 10.1063/1.4994682

Pullback transformation in gyrokinetic electromagnetic simulations
journal, September 2014

  • Mishchenko, Alexey; Könies, Axel; Kleiber, Ralf
  • Physics of Plasmas, Vol. 21, Issue 9
  • DOI: 10.1063/1.4895501

Low Mach-number collisionless electrostatic shocks and associated ion acceleration
journal, January 2018

  • Pusztai, I.; TenBarge, J. M.; Csapó, A. N.
  • Plasma Physics and Controlled Fusion, Vol. 60, Issue 3
  • DOI: 10.1088/1361-6587/aaa2cc

Comparison of initial value and eigenvalue codes for kinetic toroidal plasma instabilities
journal, August 1995


The Runge–Kutta Discontinuous Galerkin Method for Conservation Laws V
journal, April 1998

  • Cockburn, Bernardo; Shu, Chi-Wang
  • Journal of Computational Physics, Vol. 141, Issue 2
  • DOI: 10.1006/jcph.1998.5892

Conventional δf-particle simulations of electromagnetic perturbations with finite elements
journal, December 2004

  • Mishchenko, Alexey; Hatzky, Roman; Könies, Axel
  • Physics of Plasmas, Vol. 11, Issue 12
  • DOI: 10.1063/1.1812275

Plasma Oscillations with Diffusion in Velocity Space
journal, December 1958


A δf particle method for gyrokinetic simulations with kinetic electrons and electromagnetic perturbations
journal, August 2003


Verification of long wavelength electromagnetic modes with a gyrokinetic-fluid hybrid model in the XGC code
journal, May 2017

  • Hager, Robert; Lang, Jianying; Chang, C. S.
  • Physics of Plasmas, Vol. 24, Issue 5
  • DOI: 10.1063/1.4983320

A gyrokinetic one-dimensional scrape-off layer model of an edge-localized mode heat pulse
journal, February 2015

  • Shi, E. L.; Hakim, A. H.; Hammett, G. W.
  • Physics of Plasmas, Vol. 22, Issue 2
  • DOI: 10.1063/1.4907160

Gyrokinetic field theory
journal, February 2000


Collisional effects on kinetic electromagnetic modes and associated quasilinear transport
journal, January 1987

  • Rewoldt, G.; Tang, W. M.; Hastie, R. J.
  • Physics of Fluids, Vol. 30, Issue 3
  • DOI: 10.1063/1.866332

A conservative scheme for electromagnetic simulation of magnetized plasmas with kinetic electrons
journal, February 2018

  • Bao, J.; Lin, Z.; Lu, Z. X.
  • Physics of Plasmas, Vol. 25, Issue 2
  • DOI: 10.1063/1.5016432

A numerical instability in an ADI algorithm for gyrokinetics
journal, November 2005