Comparative Molecular Evolution of Trichoderma Chitinases in Response to Mycoparasitic Interactions
Abstract
Certain species of the fungal genus Trichoderma are potent mycoparasites and are used for biological control of fungal diseases on agricultural crops. In Trichoderma, whole-genome sequencing reveal between 20 and 36 different genes encoding chitinases, hydrolytic enzymes that are involved in the mycoparasitic attack. Sequences of Trichoderma chitinase genes chi18-5, chi18-13, chi18-15 and chi18-17, which all exhibit specific expression during mycoparasitism-related conditions, were determined from up to 13 different taxa and studied with regard to their evolutionary patterns. Two of them, chi18-13 and chi18-17, are members of the B1/B2 chitinase subgroup that have expanded significantly in paralog number in mycoparasitic Hypocrea atroviridis and H. virens. Chi18-13 contains two codons that evolve under positive selection and seven groups of co-evolving sites. Chi18-15 displays a unique codon-usage and contains five codons that evolve under positive selection and three groups of co-evolving sites. Regions of high amino acid variability are preferentially localized to substrate- or product side of the catalytic clefts. Differences in amino acid diversity/conservation patterns between different Trichoderma clades are observed. These observations show that Trichoderma chitinases chi18-13 and chi18-15 evolve in a manner consistent with rapid co-evolutionary interactions and identifies putative target regions involved in determining substrate-specificity
- Authors:
-
- Swedish Univ. of Agricultural Sciences, Uppsala (Sweden). Dept. of Forest Mycology and Pathology
- Swedish Univ. of Agricultural Sciences, Uppsala (Sweden). Dept. of Molecular Biology. Biomedical Center; Lund Univ. (Sweden). MAX-lab; Univ. of Copenhagen (Denmark). Inst. of Medicinal Chemistry
- Swedish Univ. of Agricultural Sciences, Uppsala (Sweden). Dept. of Microbiology
- Publication Date:
- Research Org.:
- Swedish Univ. of Agricultural Sciences, Uppsala (Sweden); USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division; Swedish Research Council for Environment, Agricultural Sciences and Spatial Planning
- OSTI Identifier:
- 1629680
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Evolutionary Bioinformatics
- Additional Journal Information:
- Journal Volume: 6; Journal ID: ISSN 1176-9343
- Publisher:
- SAGE
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; protein evolution; Trichodema; mycoparasitism; chitinase
Citation Formats
Ihrmark, Katarina, Asmail, Nashwan, Ubhayasekera, Wimal, Melin, Petter, Stenlid, Jan, and Karlsson, Magnus. Comparative Molecular Evolution of Trichoderma Chitinases in Response to Mycoparasitic Interactions. United States: N. p., 2010.
Web. doi:10.4137/ebo.s4198.
Ihrmark, Katarina, Asmail, Nashwan, Ubhayasekera, Wimal, Melin, Petter, Stenlid, Jan, & Karlsson, Magnus. Comparative Molecular Evolution of Trichoderma Chitinases in Response to Mycoparasitic Interactions. United States. https://doi.org/10.4137/ebo.s4198
Ihrmark, Katarina, Asmail, Nashwan, Ubhayasekera, Wimal, Melin, Petter, Stenlid, Jan, and Karlsson, Magnus. Mon .
"Comparative Molecular Evolution of Trichoderma Chitinases in Response to Mycoparasitic Interactions". United States. https://doi.org/10.4137/ebo.s4198. https://www.osti.gov/servlets/purl/1629680.
@article{osti_1629680,
title = {Comparative Molecular Evolution of Trichoderma Chitinases in Response to Mycoparasitic Interactions},
author = {Ihrmark, Katarina and Asmail, Nashwan and Ubhayasekera, Wimal and Melin, Petter and Stenlid, Jan and Karlsson, Magnus},
abstractNote = {Certain species of the fungal genus Trichoderma are potent mycoparasites and are used for biological control of fungal diseases on agricultural crops. In Trichoderma, whole-genome sequencing reveal between 20 and 36 different genes encoding chitinases, hydrolytic enzymes that are involved in the mycoparasitic attack. Sequences of Trichoderma chitinase genes chi18-5, chi18-13, chi18-15 and chi18-17, which all exhibit specific expression during mycoparasitism-related conditions, were determined from up to 13 different taxa and studied with regard to their evolutionary patterns. Two of them, chi18-13 and chi18-17, are members of the B1/B2 chitinase subgroup that have expanded significantly in paralog number in mycoparasitic Hypocrea atroviridis and H. virens. Chi18-13 contains two codons that evolve under positive selection and seven groups of co-evolving sites. Chi18-15 displays a unique codon-usage and contains five codons that evolve under positive selection and three groups of co-evolving sites. Regions of high amino acid variability are preferentially localized to substrate- or product side of the catalytic clefts. Differences in amino acid diversity/conservation patterns between different Trichoderma clades are observed. These observations show that Trichoderma chitinases chi18-13 and chi18-15 evolve in a manner consistent with rapid co-evolutionary interactions and identifies putative target regions involved in determining substrate-specificity},
doi = {10.4137/ebo.s4198},
journal = {Evolutionary Bioinformatics},
number = ,
volume = 6,
place = {United States},
year = {Mon Mar 15 00:00:00 EDT 2010},
month = {Mon Mar 15 00:00:00 EDT 2010}
}
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Works referenced in this record:
GenBank
journal, December 2007
- Benson, D. A.; Karsch-Mizrachi, I.; Lipman, D. J.
- Nucleic Acids Research, Vol. 36, Issue Database
A Simple Hierarchical Approach to Modeling Distributions of Substitution Rates
journal, October 2004
- Kosakovsky Pond, Sergei L.; Frost, Simon D. W.
- Molecular Biology and Evolution, Vol. 22, Issue 2
Chitinase Gene Expression during Mycoparasitic Interaction ofTrichoderma harzianumwith Its Host
journal, March 1999
- Zeilinger, Susanne; Galhaup, Christiane; Payer, Kathrin
- Fungal Genetics and Biology, Vol. 26, Issue 2
An oligonucleotide barcode for species identification in Trichoderma and Hypocrea
journal, October 2005
- Druzhinina, Irina S.; Kopchinskiy, Alexei G.; Komoń, Monika
- Fungal Genetics and Biology, Vol. 42, Issue 10
Molray – a web interface between O and the POV-Ray ray tracer
journal, July 2001
- Harris, Mark; Jones, T. Alwyn
- Acta Crystallographica Section D Biological Crystallography, Vol. 57, Issue 8
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
journal, September 1997
- Altschul, Stephen F.; Madden, Thomas L.; Schäffer, Alejandro A.
- Nucleic Acids Research, Vol. 25, Issue 17, p. 3389-3402
A new method for calculating evolutionary substitution rates
journal, February 1984
- Lanave, Cecilia; Preparata, Giuliano; Sacone, Cecilia
- Journal of Molecular Evolution, Vol. 20, Issue 1
InterProScan - an integration platform for the signature-recognition methods in InterPro
journal, September 2001
- Zdobnov, E. M.; Apweiler, R.
- Bioinformatics, Vol. 17, Issue 9, p. 847-848
Regulation of chitinase 33 ( chit33 ) gene expression in Trichoderma harzianum
journal, January 2001
- de las Mercedes Dana, M.; Limón, M. Carmen; Mejías, Rebeca
- Current Genetics, Vol. 38, Issue 6
Chitinases and Peptide Mimotopes
journal, January 2005
- Beauvais, Anne; Latgé, Jean-Paul
- Chemistry & Biology, Vol. 12, Issue 1
Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
journal, February 2005
- Pond, S. L. K.; Frost, S. D. W.
- Bioinformatics, Vol. 21, Issue 10
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures
journal, October 1991
- Kraulis, P. J.
- Journal of Applied Crystallography, Vol. 24, Issue 5
Evolution of Family 18 Glycoside Hydrolases: Diversity, Domain Structures and Phylogenetic Relationships
journal, August 2008
- Karlsson, Magnus; Stenlid, Jan
- Microbial Physiology, Vol. 16, Issue 3-4
Clustal W and Clustal X version 2.0
journal, September 2007
- Larkin, M. A.; Blackshields, G.; Brown, N. P.
- Bioinformatics, Vol. 23, Issue 21, p. 2947-2948
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
journal, April 2007
- Tamura, K.; Dudley, J.; Nei, M.
- Molecular Biology and Evolution, Vol. 24, Issue 8
Improved methods for building protein models in electron density maps and the location of errors in these models
journal, March 1991
- Jones, T. A.; Zou, J. Y.; Cowan, S. W.
- Acta Crystallographica Section A Foundations of Crystallography, Vol. 47, Issue 2, p. 110-119
SAM-T04: What is new in protein-structure prediction for CASP6
journal, January 2005
- Karplus, Kevin; Katzman, Sol; Shackleford, George
- Proteins: Structure, Function, and Bioinformatics, Vol. 61, Issue S7
Isolation and characterization of three chitinases from Trichoderma harzianum
journal, June 1992
- Cruz, Jesus; Hidalgo-Gallego, Antonio; Lora, Jose M.
- European Journal of Biochemistry, Vol. 206, Issue 3
Addition of substrate-binding domains increases substrate-binding capacity and specific activity of a chitinase fromTrichoderma harzianum
journal, April 2001
- Limón, M. Carmen; Margolles-Clark, Emilio; BenıÌtez, TahıÌa
- FEMS Microbiology Letters, Vol. 198, Issue 1
Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection
journal, February 2005
- Kosakovsky Pond, Sergei L.; Frost, Simon D. W.
- Molecular Biology and Evolution, Vol. 22, Issue 5
CDD: a Conserved Domain Database for protein classification
journal, December 2004
- Marchler-Bauer, A.
- Nucleic Acids Research, Vol. 33, Issue Database issue
Characterization of ech-42, a Trichoderma harzianum endochitinase gene expressed during mycoparasitism.
journal, November 1994
- Carsolio, C.; Gutiérrez, A.; Jiménez, B.
- Proceedings of the National Academy of Sciences, Vol. 91, Issue 23
The rapid generation of mutation data matrices from protein sequences
journal, January 1992
- Jones, David T.; Taylor, William R.; Thornton, Janet M.
- Bioinformatics, Vol. 8, Issue 3
Expression regulation of the endochitinase chit36 from Trichoderma asperellum ( T. harzianum T-203)
journal, November 2002
- Viterbo, Ada; Montero, Manuel; Ramot, Ofir
- Current Genetics, Vol. 42, Issue 2
HyPhy: hypothesis testing using phylogenies
journal, October 2004
- Pond, S. L. K.; Frost, S. D. W.; Muse, S. V.
- Bioinformatics, Vol. 21, Issue 5
The role of an extracellular chitinase from Trichoderma virens Gv29-8 in the biocontrol of Rhizoctonia solani
journal, February 1999
- Baek, Jong-Min; Howell, Charles R.; Kenerley, C. M.
- Current Genetics, Vol. 35, Issue 1
Differential Expression ofTrichoderma harzianumChitinases During Mycoparasitism
journal, January 1996
- Haran, S.
- Phytopathology, Vol. 86, Issue 9
Parallel formation and synergism of hydrolytic enzymes and peptaibol antibiotics, molecular mechanisms involved in the antagonistic action of Trichoderma harzianum against phytopathogenic fungi.
journal, January 1994
- Schirmböck, M.; Lorito, M.; Wang, Y. L.
- Applied and Environmental Microbiology, Vol. 60, Issue 12
Natural history and evolutionary principles of gene duplication in fungi
journal, September 2007
- Wapinski, Ilan; Pfeffer, Avi; Friedman, Nir
- Nature, Vol. 449, Issue 7158
Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues
journal, July 2002
- Pupko, T.; Bell, R. E.; Mayrose, I.
- Bioinformatics, Vol. 18, Issue Suppl 1
Species concepts and biodiversity in Trichoderma and Hypocrea : from aggregate species to species clusters?
journal, January 2005
- Druzhinina, Irina; Kubicek, Christian P.
- Journal of Zhejiang University SCIENCE, Vol. 6B, Issue 2
Comparative Evolutionary Histories of the Fungal Chitinase Gene Family Reveal Non-Random Size Expansions and Contractions due to Adaptive Natural Selection
journal, January 2008
- Karlsson, Magnus; Stenlid, Jan
- Evolutionary Bioinformatics, Vol. 4
Role of the
Trichoderma harzianum
Endochitinase Gene,
ech42
, in Mycoparasitism
journal, March 1999
- Carsolio, Carolina; Benhamou, Nicole; Haran, Shoshan
- Applied and Environmental Microbiology, Vol. 65, Issue 3
Trichoderma species — opportunistic, avirulent plant symbionts
journal, January 2004
- Harman, Gary E.; Howell, Charles R.; Viterbo, Ada
- Nature Reviews Microbiology, Vol. 2, Issue 1
Structure of Saccharomyces cerevisiae Chitinase 1 and Screening-Based Discovery of Potent Inhibitors
journal, May 2007
- Hurtado-Guerrero, Ramon; van Aalten, Daan M. F.
- Chemistry & Biology, Vol. 14, Issue 5
Differential recognition of animal type 4-galactosylated and 3-fucosylated chito-oligosaccharides by two family 18 chitinases from Trichoderma harzianum
journal, July 2004
- Boer, H.
- Glycobiology, Vol. 14, Issue 12
Trichoderma species — opportunistic, avirulent plant symbionts
journal, January 2004
- Harman, Gary E.; Howell, Charles R.; Viterbo, Ada
- Nature Reviews Microbiology, Vol. 2, Issue 1
Trichoderma hamatum: Its hyphal interactions withRhizoctonia solani andPythium spp.
journal, March 1981
- Chet, I.; Harman, G. E.; Baker, R.
- Microbial Ecology, Vol. 7, Issue 1
Mechanisms Employed by Trichoderma Species in the Biological Control of Plant Diseases: The History and Evolution of Current Concepts
journal, January 2003
- Howell, C. R.
- Plant Disease, Vol. 87, Issue 1
Chitinases of filamentous fungi: a large group of diverse proteins with multiple physiological functions
journal, February 2008
- Seidl, Verena
- Fungal Biology Reviews, Vol. 22, Issue 1
A complete survey of Trichoderma chitinases reveals three distinct subgroups of family 18 chitinases: Trichoderma chitinases
journal, November 2005
- Seidl, Verena; Huemer, Birgit; Seiboth, Bernhard
- FEBS Journal, Vol. 272, Issue 22
Evolution of Family 18 Glycoside Hydrolases: Diversity, Domain Structures and Phylogenetic Relationships
journal, August 2008
- Karlsson, Magnus; Stenlid, Jan
- Microbial Physiology, Vol. 16, Issue 3-4
Addition of substrate-binding domains increases substrate-binding capacity and specific activity of a chitinase from Trichoderma harzianum
journal, April 2001
- Limón, M.
- FEMS Microbiology Letters, Vol. 198, Issue 1
Molecular cloning, characterization, and expression studies of a novel chitinase gene (ech30) from the mycoparasite Trichoderma atroviride strain P1
journal, March 2006
- Klemsdal, Sonja S.; Clarke, Jihong Liu; Hoell, Ingunn A.
- FEMS Microbiology Letters, Vol. 256, Issue 2
Cloning and characterization of multiple glycosyl hydrolase genes from Trichoderma virens
journal, March 2002
- Kim, Dong-Jin; Baek, Jong-Min; Uribe, Pedro
- Current Genetics, Vol. 40, Issue 6
Expression regulation of the endochitinase chit36 from Trichoderma asperellum ( T. harzianum T-203)
journal, November 2002
- Viterbo, Ada; Montero, Manuel; Ramot, Ofir
- Current Genetics, Vol. 42, Issue 2
Regulation of chitinase 33 ( chit33 ) gene expression in Trichoderma harzianum
journal, January 2001
- de las Mercedes Dana, M.; Limón, M. Carmen; Mejías, Rebeca
- Current Genetics, Vol. 38, Issue 6
Chitinase Gene Expression during Mycoparasitic Interaction ofTrichoderma harzianumwith Its Host
journal, March 1999
- Zeilinger, Susanne; Galhaup, Christiane; Payer, Kathrin
- Fungal Genetics and Biology, Vol. 26, Issue 2
Rapid evolution in plant chitinases: Molecular targets of selection in plant-pathogen coevolution
journal, May 2000
- Bishop, J. G.; Dean, A. M.; Mitchell-Olds, T.
- Proceedings of the National Academy of Sciences, Vol. 97, Issue 10
ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts
journal, April 1993
- Gardes, M.; Bruns, T. D.
- Molecular Ecology, Vol. 2, Issue 2
An oligonucleotide barcode for species identification in Trichoderma and Hypocrea
journal, October 2005
- Druzhinina, Irina S.; Kopchinskiy, Alexei G.; Komoń, Monika
- Fungal Genetics and Biology, Vol. 42, Issue 10
CAFE: a computational tool for the study of gene family evolution
journal, March 2006
- De Bie, T.; Cristianini, N.; Demuth, J. P.
- Bioinformatics, Vol. 22, Issue 10
Estimating the tempo and mode of gene family evolution from comparative genomic data
journal, August 2005
- Hahn, M. W.
- Genome Research, Vol. 15, Issue 8
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
journal, September 1997
- Altschul, Stephen F.; Madden, Thomas L.; Schäffer, Alejandro A.
- Nucleic Acids Research, Vol. 25, Issue 17, p. 3389-3402
InterProScan - an integration platform for the signature-recognition methods in InterPro
journal, September 2001
- Zdobnov, E. M.; Apweiler, R.
- Bioinformatics, Vol. 17, Issue 9, p. 847-848
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
journal, January 1994
- Thompson, Julie D.; Higgins, Desmond G.; Gibson, Toby J.
- Nucleic Acids Research, Vol. 22, Issue 22, p. 4673-4680
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
journal, April 2007
- Tamura, K.; Dudley, J.; Nei, M.
- Molecular Biology and Evolution, Vol. 24, Issue 8
Clustal W and Clustal X version 2.0
journal, September 2007
- Larkin, M. A.; Blackshields, G.; Brown, N. P.
- Bioinformatics, Vol. 23, Issue 21, p. 2947-2948
Reverse Conservation Analysis Reveals the Specificity Determining Residues of Cytochrome P450 Family 2 (CYP 2)
journal, January 2008
- Lee, Tai-Sung
- Evolutionary Bioinformatics, Vol. 4
Comparison of Site-Specific Rate-Inference Methods for Protein Sequences: Empirical Bayesian Methods Are Superior
journal, May 2004
- Mayrose, I.
- Molecular Biology and Evolution, Vol. 21, Issue 9
GenBank
journal, December 2007
- Benson, D. A.; Karsch-Mizrachi, I.; Lipman, D. J.
- Nucleic Acids Research, Vol. 36, Issue Database
SAM-T04: What is new in protein-structure prediction for CASP6
journal, January 2005
- Karplus, Kevin; Katzman, Sol; Shackleford, George
- Proteins: Structure, Function, and Bioinformatics, Vol. 61, Issue S7
Specificity and Affinity of Natural Product Cyclopentapeptide Inhibitors against A. fumigatus, Human, and Bacterial Chitinases
journal, January 2005
- Rao, Francesco V.; Houston, Douglas R.; Boot, Rolf G.
- Chemistry & Biology, Vol. 12, Issue 1
cDNA cloning and 1.75 Å crystal structure determination of PPL2, an endochitinase and N-acetylglucosamine-binding hemagglutinin from Parkia platycephala seeds
journal, July 2006
- Cavada, Benildo S.; Moreno, Frederico B. B.; Da Rocha, Bruno A. M.
- FEBS Journal, Vol. 273, Issue 17
Structure of Saccharomyces cerevisiae Chitinase 1 and Screening-Based Discovery of Potent Inhibitors
journal, May 2007
- Hurtado-Guerrero, Ramon; van Aalten, Daan M. F.
- Chemistry & Biology, Vol. 14, Issue 5
Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection
journal, February 2005
- Kosakovsky Pond, Sergei L.; Frost, Simon D. W.
- Molecular Biology and Evolution, Vol. 22, Issue 5
HyPhy: hypothesis testing using phylogenies
journal, October 2004
- Pond, S. L. K.; Frost, S. D. W.; Muse, S. V.
- Bioinformatics, Vol. 21, Issue 5
Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
journal, February 2005
- Pond, S. L. K.; Frost, S. D. W.
- Bioinformatics, Vol. 21, Issue 10
A Simple Hierarchical Approach to Modeling Distributions of Substitution Rates
journal, October 2004
- Kosakovsky Pond, Sergei L.; Frost, Simon D. W.
- Molecular Biology and Evolution, Vol. 22, Issue 2
An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope
journal, November 2007
- Poon, Art F. Y.; Lewis, Fraser I.; Pond, Sergei L. Kosakovsky
- PLoS Computational Biology, Vol. 3, Issue 11
CDD: a Conserved Domain Database for protein classification
journal, December 2004
- Marchler-Bauer, A.
- Nucleic Acids Research, Vol. 33, Issue Database issue
Natural history and evolutionary principles of gene duplication in fungi
journal, September 2007
- Wapinski, Ilan; Pfeffer, Avi; Friedman, Nir
- Nature, Vol. 449, Issue 7158
Overexpression and characterization of a novel chitinase from Trichoderma atroviride strain P1
journal, May 2005
- Hoell, Ingunn A.; Klemsdal, Sonja S.; Vaaje-Kolstad, Gustav
- Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1748, Issue 2
Isolation and characterization of three chitinases from Trichoderma harzianum
journal, June 1992
- Cruz, Jesus; Hidalgo-Gallego, Antonio; Lora, Jose M.
- European Journal of Biochemistry, Vol. 206, Issue 3
Differential recognition of animal type 4-galactosylated and 3-fucosylated chito-oligosaccharides by two family 18 chitinases from Trichoderma harzianum
journal, July 2004
- Boer, H.
- Glycobiology, Vol. 14, Issue 12
Characterization of ech-42, a Trichoderma harzianum endochitinase gene expressed during mycoparasitism.
journal, November 1994
- Carsolio, C.; Gutiérrez, A.; Jiménez, B.
- Proceedings of the National Academy of Sciences, Vol. 91, Issue 23
Cloning and characterization of a chitinase (CHIT42) cDNA from the mycoparasitic fungus Trichoderma harzianum
journal, December 1994
- García, Irene; Lora, José M.; de la Cruz, Jesús
- Current Genetics, Vol. 27, Issue 1
Expression of Two Major Chitinase Genes of
Trichoderma atroviride
(
T. harzianum
P1) Is Triggered by Different Regulatory Signals
journal, May 1999
- Mach, Robert L.; Peterbauer, Clemens K.; Payer, Kathrin
- Applied and Environmental Microbiology, Vol. 65, Issue 5
Disruption of the ech42 (Endochitinase-Encoding) Gene Affects Biocontrol Activity in Trichoderma harzianum P1
journal, May 1999
- Woo, S. L.; Donzelli, B.; Scala, F.
- Molecular Plant-Microbe Interactions®, Vol. 12, Issue 5
The role of an extracellular chitinase from Trichoderma virens Gv29-8 in the biocontrol of Rhizoctonia solani
journal, February 1999
- Baek, Jong-Min; Howell, Charles R.; Kenerley, C. M.
- Current Genetics, Vol. 35, Issue 1
Works referencing / citing this record:
Chitinolytic assay of indigenous Trichoderma isolates collected from different geographical locations of Chhattisgarh in Central India
journal, December 2012
- Agrawal, Toshy; Kotasthane, Anil S.
- SpringerPlus, Vol. 1, Issue 1
Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea
journal, January 2015
- Karlsson, Magnus; Durling, Mikael Brandström; Choi, Jaeyoung
- Genome Biology and Evolution, Vol. 7, Issue 2
Trichoderma: the genomics of opportunistic success
journal, September 2011
- Druzhinina, Irina S.; Seidl-Seiboth, Verena; Herrera-Estrella, Alfredo
- Nature Reviews Microbiology, Vol. 9, Issue 10
Disruption of the Eng18B ENGase Gene in the Fungal Biocontrol Agent Trichoderma atroviride Affects Growth, Conidiation and Antagonistic Ability
journal, May 2012
- Dubey, Mukesh K.; Ubhayasekera, Wimal; Sandgren, Mats
- PLoS ONE, Vol. 7, Issue 5
Comparative Genomics Provide Insights into Evolution of Trichoderma Nutrition Style
journal, January 2014
- Xie, Bin-Bin; Qin, Qi-Long; Shi, Mei
- Genome Biology and Evolution, Vol. 6, Issue 2
Comparative Genomics Provide Insights into Evolution of Trichoderma Nutrition Style
journal, January 2014
- Xie, Bin-Bin; Qin, Qi-Long; Shi, Mei
- Genome Biology and Evolution, Vol. 6, Issue 2
Bacterial and fungal chitinase chiJ orthologs evolve under different selective constraints following horizontal gene transfer
journal, October 2012
- Ubhayasekera, Wimal; Karlsson, Magnus
- BMC Research Notes, Vol. 5, Issue 1
Encapsulation of Trichoderma harzianum Preserves Enzymatic Activity and Enhances the Potential for Biological Control
journal, March 2020
- Maruyama, Cintia Rodrigues; Bilesky-José, Natália; de Lima, Renata
- Frontiers in Bioengineering and Biotechnology, Vol. 8
Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea
journal, January 2015
- Karlsson, Magnus; Durling, Mikael Brandström; Choi, Jaeyoung
- Genome Biology and Evolution, Vol. 7, Issue 2
Genome Sequence, Comparative Analysis, and Evolutionary Insights into Chitinases of Entomopathogenic Fungus Hirsutella thompsonii
journal, February 2015
- Agrawal, Yamini; Khatri, Indu; Subramanian, Srikrishna
- Genome Biology and Evolution, Vol. 7, Issue 3
Genome Sequence, Comparative Analysis, and Evolutionary Insights into Chitinases of Entomopathogenic Fungus Hirsutella thompsonii
journal, February 2015
- Agrawal, Yamini; Khatri, Indu; Subramanian, Srikrishna
- Genome Biology and Evolution, Vol. 7, Issue 3
Paleozoic diversification of terrestrial chitin-degrading bacterial lineages
journal, January 2019
- Gruen, Danielle S.; Wolfe, Joanna M.; Fournier, Gregory P.
- BMC Evolutionary Biology, Vol. 19, Issue 1
Integrated Translatome and Proteome: Approach for Accurate Portraying of Widespread Multifunctional Aspects of Trichoderma
journal, August 2017
- Sharma, Vivek; Salwan, Richa; Sharma, P. N.
- Frontiers in Microbiology, Vol. 8
Identifying glycoside hydrolase family 18 genes in the mycoparasitic fungal species Clonostachys rosea
journal, July 2015
- Karlsson, Magnus; Jensen, Dan Funck; Dubey, Mukesh
- Microbiology, Vol. 161, Issue 7
Disruption of the Eng18B ENGase Gene in the Fungal Biocontrol Agent Trichoderma atroviride Affects Growth, Conidiation and Antagonistic Ability
journal, May 2012
- Dubey, Mukesh K.; Ubhayasekera, Wimal; Sandgren, Mats
- PLoS ONE, Vol. 7, Issue 5