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Title: Complete Genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species

Abstract

Burkholderia phymatum is a soil bacterium able to develop a nitrogen-fixing symbiosis with species of the legume genus Mimosa, and is frequently found associated specifically with Mimosa pudica. The type strain of the species, STM 815T , was isolated from a root nodule in French Guiana in 2000. The strain is an aerobic, motile, non-spore forming, Gram-negative rod, and is a highly competitive strain for nodulation compared to other Mimosa symbionts, as it also nodulates a broad range of other legume genera and species. The 8,676,562 bp genome is composed of two chromosomes (3,479,187 and 2,697,374 bp), a megaplasmid (1,904,893 bp) and a plasmid hosting the symbiotic functions (595,108 bp).

Authors:
 [1];  [1];  [1];  [2];  [2];  [1];  [3];  [4];  [1];  [5];  [5];  [6];  [7];  [7];  [6];  [6];  [6];  [3];  [6];  [3]
+ Show Author Affiliations
  1. National Centre for Scientific Research-Mixed Organizations (CNRS-UMR), Paris (France). IRD
  2. Univ. of Massachusetts, Amherst, MA (United States)
  3. James Hutton Inst., Dundee (United Kingdom)
  4. Univ. of York (United Kingdom)
  5. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  6. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  7. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
Publication Date:
Research Org.:
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
OSTI Identifier:
1628687
Grant/Contract Number:  
AC52-06NA25396; AC02-05CH11231; AC52-07NA27344
Resource Type:
Accepted Manuscript
Journal Name:
Standards in Genomic Sciences
Additional Journal Information:
Journal Volume: 9; Journal Issue: 3; Journal ID: ISSN 1944-3277
Publisher:
BioMed Central
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Genetics & Heredity; Microbiology; Burkholderia; symbiosis; Mimosa; rhizobia; nitrogen fixation

Citation Formats

Moulin, Lionel, Klonowska, Agnieszka, Caroline, Bournaud, Booth, Kristina, Vriezen, Jan A. C., Melkonian, Rémy, James, Euan K., Young, J. Peter W., Bena, Gilles, Hauser, Loren, Land, Miriam, Kyrpides, Nikos, Bruce, David, Chain, Patrick, Copeland, Alex, Pitluck, Sam, Woyke, Tanja, Lizotte-Waniewski, Michelle, Bristow, Jim, and Riley, Margaret. Complete Genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species. United States: N. p., 2014. Web. doi:10.4056/sigs.4861021.
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Moulin, Lionel, Klonowska, Agnieszka, Caroline, Bournaud, Booth, Kristina, Vriezen, Jan A. C., Melkonian, Rémy, James, Euan K., Young, J. Peter W., Bena, Gilles, Hauser, Loren, Land, Miriam, Kyrpides, Nikos, Bruce, David, Chain, Patrick, Copeland, Alex, Pitluck, Sam, Woyke, Tanja, Lizotte-Waniewski, Michelle, Bristow, Jim, & Riley, Margaret. Complete Genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species. United States. https://doi.org/10.4056/sigs.4861021
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Moulin, Lionel, Klonowska, Agnieszka, Caroline, Bournaud, Booth, Kristina, Vriezen, Jan A. C., Melkonian, Rémy, James, Euan K., Young, J. Peter W., Bena, Gilles, Hauser, Loren, Land, Miriam, Kyrpides, Nikos, Bruce, David, Chain, Patrick, Copeland, Alex, Pitluck, Sam, Woyke, Tanja, Lizotte-Waniewski, Michelle, Bristow, Jim, and Riley, Margaret. Tue . "Complete Genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species". United States. https://doi.org/10.4056/sigs.4861021. https://www.osti.gov/servlets/purl/1628687.
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@article{osti_1628687,
title = {Complete Genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species},
author = {Moulin, Lionel and Klonowska, Agnieszka and Caroline, Bournaud and Booth, Kristina and Vriezen, Jan A. C. and Melkonian, Rémy and James, Euan K. and Young, J. Peter W. and Bena, Gilles and Hauser, Loren and Land, Miriam and Kyrpides, Nikos and Bruce, David and Chain, Patrick and Copeland, Alex and Pitluck, Sam and Woyke, Tanja and Lizotte-Waniewski, Michelle and Bristow, Jim and Riley, Margaret},
abstractNote = {Burkholderia phymatum is a soil bacterium able to develop a nitrogen-fixing symbiosis with species of the legume genus Mimosa, and is frequently found associated specifically with Mimosa pudica. The type strain of the species, STM 815T , was isolated from a root nodule in French Guiana in 2000. The strain is an aerobic, motile, non-spore forming, Gram-negative rod, and is a highly competitive strain for nodulation compared to other Mimosa symbionts, as it also nodulates a broad range of other legume genera and species. The 8,676,562 bp genome is composed of two chromosomes (3,479,187 and 2,697,374 bp), a megaplasmid (1,904,893 bp) and a plasmid hosting the symbiotic functions (595,108 bp).},
doi = {10.4056/sigs.4861021},
journal = {Standards in Genomic Sciences},
number = 3,
volume = 9,
place = {United States},
year = {Tue Mar 25 00:00:00 EDT 2014},
month = {Tue Mar 25 00:00:00 EDT 2014}
}
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https://doi.org/10.4056/sigs.4861021
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    Works referencing / citing this record:

    Comparative genomics of Paraburkholderia kururiensis and its potential in bioremediation, biofertilization, and biocontrol of plant pathogens
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