Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom
Abstract
Microalgae play a major role as primary producers in aquatic ecosystems. Cell signalling regulates their interactions with the environment and other organisms, yet this process in phytoplankton is poorly defined. Using the marine planktonic diatom Pseudo-nitzschia multistriata, we investigated the cell response to cues released during sexual reproduction, an event that demands strong regulatory mechanisms and impacts on population dynamics. We sequenced the genome of P. multistriata and performed phylogenomic and transcriptomic analyses, which allowed the definition of gene gains and losses, horizontal gene transfers, conservation and evolutionary rate of sex-related genes. We also identified a small number of conserved noncoding elements. Sexual reproduction impacted on cell cycle progression and induced an asymmetric response of the opposite mating types. G protein-coupled receptors and cyclic guanosine monophosphate (cGMP) are implicated in the response to sexual cues, which overall entails a modulation of cell cycle, meiosis-related and nutrient transporter genes, suggesting a fine control of nutrient uptake even under nutrient-replete conditions. The controllable life cycle and the genome sequence of P. multistriata allow the reconstruction of changes occurring in diatoms in a key phase of their life cycle, providing hints on the evolution and putative function of their genes and empowering studiesmore »
- Authors:
-
- Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Villa Comunale 1 Naples 80121 Italy
- Earlham Institute, Norwich Research Park, Norwich NR4 7UG UK
- URGI, INRA, Université Paris-Saclay, 78026 Versailles France
- School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ UK
- Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Villa Comunale 1 Naples 80121 Italy
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC)
- OSTI Identifier:
- 1625916
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- New Phytologist
- Additional Journal Information:
- Journal Volume: 215; Journal Issue: 1; Journal ID: ISSN 0028-646X
- Publisher:
- Wiley
- Country of Publication:
- United States
- Language:
- English
- Subject:
- Plant Sciences; algae; diatom; genomics; matingtype; phytoplankton,Pseudo-nitzschia multistriata; sexual reproduction; signal transduction
Citation Formats
Basu, Swaraj, Patil, Shrikant, Mapleson, Daniel, Russo, Monia Teresa, Vitale, Laura, Fevola, Cristina, Maumus, Florian, Casotti, Raffaella, Mock, Thomas, Caccamo, Mario, Montresor, Marina, Sanges, Remo, and Ferrante, Maria Immacolata. Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom. United States: N. p., 2017.
Web. doi:10.1111/nph.14557.
Basu, Swaraj, Patil, Shrikant, Mapleson, Daniel, Russo, Monia Teresa, Vitale, Laura, Fevola, Cristina, Maumus, Florian, Casotti, Raffaella, Mock, Thomas, Caccamo, Mario, Montresor, Marina, Sanges, Remo, & Ferrante, Maria Immacolata. Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom. United States. https://doi.org/10.1111/nph.14557
Basu, Swaraj, Patil, Shrikant, Mapleson, Daniel, Russo, Monia Teresa, Vitale, Laura, Fevola, Cristina, Maumus, Florian, Casotti, Raffaella, Mock, Thomas, Caccamo, Mario, Montresor, Marina, Sanges, Remo, and Ferrante, Maria Immacolata. Fri .
"Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom". United States. https://doi.org/10.1111/nph.14557. https://www.osti.gov/servlets/purl/1625916.
@article{osti_1625916,
title = {Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom},
author = {Basu, Swaraj and Patil, Shrikant and Mapleson, Daniel and Russo, Monia Teresa and Vitale, Laura and Fevola, Cristina and Maumus, Florian and Casotti, Raffaella and Mock, Thomas and Caccamo, Mario and Montresor, Marina and Sanges, Remo and Ferrante, Maria Immacolata},
abstractNote = {Microalgae play a major role as primary producers in aquatic ecosystems. Cell signalling regulates their interactions with the environment and other organisms, yet this process in phytoplankton is poorly defined. Using the marine planktonic diatom Pseudo-nitzschia multistriata, we investigated the cell response to cues released during sexual reproduction, an event that demands strong regulatory mechanisms and impacts on population dynamics. We sequenced the genome of P. multistriata and performed phylogenomic and transcriptomic analyses, which allowed the definition of gene gains and losses, horizontal gene transfers, conservation and evolutionary rate of sex-related genes. We also identified a small number of conserved noncoding elements. Sexual reproduction impacted on cell cycle progression and induced an asymmetric response of the opposite mating types. G protein-coupled receptors and cyclic guanosine monophosphate (cGMP) are implicated in the response to sexual cues, which overall entails a modulation of cell cycle, meiosis-related and nutrient transporter genes, suggesting a fine control of nutrient uptake even under nutrient-replete conditions. The controllable life cycle and the genome sequence of P. multistriata allow the reconstruction of changes occurring in diatoms in a key phase of their life cycle, providing hints on the evolution and putative function of their genes and empowering studies on sexual reproduction},
doi = {10.1111/nph.14557},
journal = {New Phytologist},
number = 1,
volume = 215,
place = {United States},
year = {Fri Apr 21 00:00:00 EDT 2017},
month = {Fri Apr 21 00:00:00 EDT 2017}
}
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RAMPART: a workflow management system for de novo genome assembly
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An efficient algorithm for large-scale detection of protein families
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