Illumina sequencing-based analysis of free-living bacterial community dynamics during an Akashiwo sanguine bloom in Xiamen sea, China
Abstract
Although phytoplankton are the major source of marine dissolved organic matter (DOM), their blooms are a global problem that can greatly affect marine ecological systems, especially free-living bacteria, which are the primary DOM degraders. In this study, we analyzed free-living bacterial communities from Xiamen sea during an Akashiwo sanguine bloom using Illumina MiSeq sequencing of 16S rRNA gene amplicons. The bloom was probably stimulated by low salinity and ended after abatement of eutrophication pollution. A total of 658,446 sequence reads and 11,807 OTUs were obtained in both bloom and control samples with Alpha-proteobacteria and Gamma-proteobacteria being the predominant classes detected. The bloom decreased bacterial diversity, increased species evenness and significantly changed the bacterial community structure. Bacterial communities within the bloom were more homogeneous than those within the control area. The bacteria stimulated by this bloom included the SAR86 and SAR116 clades and the AEGEAN-169 marine group, but a few were suppressed. In addition, many bacteria known to be associated with phytoplankton were detected only in the bloom samples. This study revealed the great influence of an A. sanguinea bloom on free-living bacterial communities and provided new insights into the relationship between bacteria and A. sanguinea in marine ecosystems.
- Authors:
-
- State Key Laboratory for Marine Environmental Science and Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, School of Life Sciences, Xiamen University, Xiamen, China
- State Key Laboratory for Marine Environmental Science and Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, School of Life Sciences, Xiamen University, Xiamen, 361005, China
- Stanford Univ., Stanford, CA (United States). Dept. of Computer Science
- Univ. of Oklahoma, Norman, OK, (United States). Inst. for Environmental Genomics and Dept. of Microbiology and Plant Biology
- Univ. of Oklahoma, Norman, OK, (United States). Inst. for Environmental Genomics and Dept. of Microbiology and Plant Biology; ; Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Earth Sciences Division
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Lab (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Sciene (SC); The Natural Science Foundation of China; Public Science and Technology Research Funds for Ocean Projects; Program for Changjiang Scholars and Innovative Research Team in University
- OSTI Identifier:
- 1624758
- Grant/Contract Number:
- AC02-05CH11231; 41376119; 40930847; 201305016; 201305022; 41121091
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Scientific Reports
- Additional Journal Information:
- Journal Volume: 5; Journal Issue: 1; Journal ID: ISSN 2045-2322
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- Science & Technology - Other Topics
Citation Formats
Yang, Caiyun, Li, Yi, Zhou, Benjamin, Zhou, Yanyan, Zheng, Wei, Tian, Yun, Van Nostrand, Joy D., Wu, Liyou, He, Zhili, Zhou, Jizhong, and Zheng, Tianling. Illumina sequencing-based analysis of free-living bacterial community dynamics during an Akashiwo sanguine bloom in Xiamen sea, China. United States: N. p., 2015.
Web. doi:10.1038/srep08476.
Yang, Caiyun, Li, Yi, Zhou, Benjamin, Zhou, Yanyan, Zheng, Wei, Tian, Yun, Van Nostrand, Joy D., Wu, Liyou, He, Zhili, Zhou, Jizhong, & Zheng, Tianling. Illumina sequencing-based analysis of free-living bacterial community dynamics during an Akashiwo sanguine bloom in Xiamen sea, China. United States. https://doi.org/10.1038/srep08476
Yang, Caiyun, Li, Yi, Zhou, Benjamin, Zhou, Yanyan, Zheng, Wei, Tian, Yun, Van Nostrand, Joy D., Wu, Liyou, He, Zhili, Zhou, Jizhong, and Zheng, Tianling. Mon .
"Illumina sequencing-based analysis of free-living bacterial community dynamics during an Akashiwo sanguine bloom in Xiamen sea, China". United States. https://doi.org/10.1038/srep08476. https://www.osti.gov/servlets/purl/1624758.
@article{osti_1624758,
title = {Illumina sequencing-based analysis of free-living bacterial community dynamics during an Akashiwo sanguine bloom in Xiamen sea, China},
author = {Yang, Caiyun and Li, Yi and Zhou, Benjamin and Zhou, Yanyan and Zheng, Wei and Tian, Yun and Van Nostrand, Joy D. and Wu, Liyou and He, Zhili and Zhou, Jizhong and Zheng, Tianling},
abstractNote = {Although phytoplankton are the major source of marine dissolved organic matter (DOM), their blooms are a global problem that can greatly affect marine ecological systems, especially free-living bacteria, which are the primary DOM degraders. In this study, we analyzed free-living bacterial communities from Xiamen sea during an Akashiwo sanguine bloom using Illumina MiSeq sequencing of 16S rRNA gene amplicons. The bloom was probably stimulated by low salinity and ended after abatement of eutrophication pollution. A total of 658,446 sequence reads and 11,807 OTUs were obtained in both bloom and control samples with Alpha-proteobacteria and Gamma-proteobacteria being the predominant classes detected. The bloom decreased bacterial diversity, increased species evenness and significantly changed the bacterial community structure. Bacterial communities within the bloom were more homogeneous than those within the control area. The bacteria stimulated by this bloom included the SAR86 and SAR116 clades and the AEGEAN-169 marine group, but a few were suppressed. In addition, many bacteria known to be associated with phytoplankton were detected only in the bloom samples. This study revealed the great influence of an A. sanguinea bloom on free-living bacterial communities and provided new insights into the relationship between bacteria and A. sanguinea in marine ecosystems.},
doi = {10.1038/srep08476},
journal = {Scientific Reports},
number = 1,
volume = 5,
place = {United States},
year = {Mon Feb 16 00:00:00 EST 2015},
month = {Mon Feb 16 00:00:00 EST 2015}
}
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Genomic and physiological analyses of ‘ Reinekea forsetii ’ reveal a versatile opportunistic lifestyle during spring algae blooms: ‘Reinekea Forsetii' Ecophysiology in Algae Blooms
journal, February 2017
- Avcı, Burak; Hahnke, Richard L.; Chafee, Meghan
- Environmental Microbiology, Vol. 19, Issue 3
Cyanobacterial harmful algal blooms are a biological disturbance to Western Lake Erie bacterial communities: Bacterial community ecology of CHABs
journal, February 2017
- Berry, Michelle A.; Davis, Timothy W.; Cory, Rose M.
- Environmental Microbiology, Vol. 19, Issue 3
Lysing bloom-causing alga Phaeocystis globosa with microbial algicide: An efficient process that decreases the toxicity of algal exudates
journal, February 2016
- Cai, Guanjing; Yang, Xujun; Lai, Qiliang
- Scientific Reports, Vol. 6, Issue 1
Distinct Network Interactions in Particle-Associated and Free-Living Bacterial Communities during a Microcystis aeruginosa Bloom in a Plateau Lake
journal, June 2017
- Yang, Caiyun; Wang, Qi; Simon, Paulina N.
- Frontiers in Microbiology, Vol. 8
Land-use changes influence soil bacterial communities in a meadow grassland in Northeast China
journal, January 2017
- Cao, Chengyou; Zhang, Ying; Qian, Wei
- Solid Earth, Vol. 8, Issue 5
Analysis of Bacterial Community Composition of Corroded Steel Immersed in Sanya and Xiamen Seawaters in China via Method of Illumina MiSeq Sequencing
journal, September 2017
- Li, Xiaohong; Duan, Jizhou; Xiao, Hui
- Frontiers in Microbiology, Vol. 8
Analysis of Bacterial Community Composition of Corroded Steel Immersed in Sanya and Xiamen Seawaters in China via Method of Illumina MiSeq Sequencing
journal, September 2017
- Li, Xiaohong; Duan, Jizhou; Xiao, Hui
- Frontiers in Microbiology, Vol. 8
Small tropical islands with dense human population: Differences in water quality of near-shore waters are associated with distinct bacterial communities
posted_content, February 2018
- Kegler, Hauke; Hassenrueck, Christiane; Kegler, Pia
- PeerJ Preprints
Soil bacterial community responses to revegetation of moving sand dune in semi-arid grassland
journal, May 2017
- Cao, Chengyou; Zhang, Ying; Cui, Zhenbo
- Applied Microbiology and Biotechnology, Vol. 101, Issue 15
Land-use changes influence soil bacterial communities in a meadow grassland in Northeast China
posted_content, July 2017
- Cao, Chengyou; Zhang, Ying; Qian, Wei
- Solid Earth Discussions
On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre
journal, May 2019
- Reintjes, Greta; Tegetmeyer, Halina E.; Bürgisser, Miriam
- Applied and Environmental Microbiology, Vol. 85, Issue 14
A comprehensive insight into functional profiles of free-living microbial community responses to a toxic Akashiwo sanguinea bloom
journal, October 2016
- Yang, Caiyun; Li, Yi; Zhou, Yanyan
- Scientific Reports, Vol. 6, Issue 1
Microbial dynamics during harmful dinoflagellate Ostreopsis cf. ovata growth: Bacterial succession and viral abundance pattern
journal, February 2018
- Guidi, Flavio; Pezzolesi, Laura; Vanucci, Silvana
- MicrobiologyOpen, Vol. 7, Issue 4
Diversity and Variation of Bacterial Community Revealed by MiSeq Sequencing in Chinese Dark Teas
journal, September 2016
- Fu, Jianyu; Lv, Haipeng; Chen, Feng
- PLOS ONE, Vol. 11, Issue 9
Temporal and spatial variations of aquatic environmental characteristics and sediment bacterial community in five regions of Lake Taihu
journal, May 2017
- Wan, Yu; Bai, Yang; He, Jia
- Aquatic Ecology, Vol. 51, Issue 3
Identification of Major Rhizobacterial Taxa Affected by a Glyphosate-Tolerant Soybean Line via Shotgun Metagenomic Approach
journal, April 2018
- Lu, Gui-Hua; Hua, Xiao-Mei; Liang, Li
- Genes, Vol. 9, Issue 4
Illumina sequencing-based analysis of sediment bacteria community in different trophic status freshwater lakes
journal, February 2017
- Wan, Yu; Ruan, Xiaohong; Zhang, Yaping
- MicrobiologyOpen, Vol. 6, Issue 4
Distinct Network Interactions in Particle-Associated and Free-Living Bacterial Communities during a Microcystis aeruginosa Bloom in a Plateau Lake
journal, June 2017
- Yang, Caiyun; Wang, Qi; Simon, Paulina N.
- Frontiers in Microbiology, Vol. 8
Bacterioplankton Biogeography of the Atlantic Ocean: A Case Study of the Distance-Decay Relationship
journal, April 2016
- Milici, Mathias; Tomasch, Jürgen; Wos-Oxley, Melissa L.
- Frontiers in Microbiology, Vol. 7
Identification of Major Rhizobacterial Taxa Affected by a Glyphosate-Tolerant Soybean Line via Shotgun Metagenomic Approach
journal, April 2018
- Lu, Gui-Hua; Hua, Xiao-Mei; Liang, Li
- Genes, Vol. 9, Issue 4
Illumina sequencing-based analysis of sediment bacteria community in different trophic status freshwater lakes
journal, February 2017
- Wan, Yu; Ruan, Xiaohong; Zhang, Yaping
- MicrobiologyOpen, Vol. 6, Issue 4
Bacterioplankton Biogeography of the Atlantic Ocean: A Case Study of the Distance-Decay Relationship
journal, April 2016
- Milici, Mathias; Tomasch, Jürgen; Wos-Oxley, Melissa L.
- Frontiers in Microbiology, Vol. 7
Seasonal Dynamics of Marine Microbial Community in the South Sea of Korea
journal, June 2015
- Suh, Sung-Suk; Park, Mirye; Hwang, Jinik
- PLOS ONE, Vol. 10, Issue 6
Low diversity of planktonic bacteria in the tropical ocean
journal, January 2016
- Milici, Mathias; Tomasch, Jürgen; Wos-Oxley, Melissa L.
- Scientific Reports, Vol. 6, Issue 1
Response of bacterial communities in rubber plantations to different fertilizer treatments
journal, July 2019
- Zhang, Zhiyang; Zhang, Peisong; Lin, Qinghuo
- 3 Biotech, Vol. 9, Issue 8
Small tropical islands with dense human population: differences in water quality of near-shore waters are associated with distinct bacterial communities
journal, January 2018
- Kegler, Hauke F.; Hassenrück, Christiane; Kegler, Pia
- PeerJ, Vol. 6
Microbial dynamics during harmful dinoflagellate Ostreopsis cf. ovata growth: Bacterial succession and viral abundance pattern
journal, February 2018
- Guidi, Flavio; Pezzolesi, Laura; Vanucci, Silvana
- MicrobiologyOpen, Vol. 7, Issue 4
A 2-year field trial reveals no significant effects of GM high-methionine soybean on the rhizosphere bacterial communities
journal, July 2018
- Liang, Jingang; Jiao, Yue; Luan, Ying
- World Journal of Microbiology and Biotechnology, Vol. 34, Issue 8
Low diversity of planktonic bacteria in the tropical ocean
journal, January 2016
- Milici, Mathias; Tomasch, Jürgen; Wos-Oxley, Melissa L.
- Scientific Reports, Vol. 6, Issue 1
Genomic analysis of red-tide water bloomed with Heterosigma akashiwo in Geoje
journal, May 2018
- Kang, Hye-Eun; Yoon, Tae-Ho; Yoon, Sunyoung
- PeerJ, Vol. 6
Small tropical islands with dense human population: Differences in water quality of near-shore waters are associated with distinct bacterial communities
posted_content, February 2018
- Kegler, Hauke; Hassenrueck, Christiane; Kegler, Pia
- PeerJ Preprints
Enrichments/Derichments of Root-Associated Bacteria Related to Plant Growth and Nutrition Caused by the Growth of an EPSPS-Transgenic Maize Line in the Field
journal, June 2019
- Wen, Zhong-Ling; Yang, Min-Kai; Du, Mei-Hang
- Frontiers in Microbiology, Vol. 10
High-Quality Draft Single-Cell Genome Sequence of the NS5 Marine Group from the Coastal Red Sea
journal, June 2018
- Ngugi, David K.; Stingl, Ulrich
- Genome Announcements, Vol. 6, Issue 25
Response of bacterial communities in rubber plantations to different fertilizer treatments
journal, July 2019
- Zhang, Zhiyang; Zhang, Peisong; Lin, Qinghuo
- 3 Biotech, Vol. 9, Issue 8
Enrichments/Derichments of Root-Associated Bacteria Related to Plant Growth and Nutrition Caused by the Growth of an EPSPS-Transgenic Maize Line in the Field
journal, June 2019
- Wen, Zhong-Ling; Yang, Min-Kai; Du, Mei-Hang
- Frontiers in Microbiology, Vol. 10
Small tropical islands with dense human population: Differences in water quality of near-shore waters are associated with distinct bacterial communities
posted_content, February 2018
- Kegler, Hauke; Hassenrueck, Christiane; Kegler, Pia
- PeerJ Preprints