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Title: Modeling the processes of soil moisture in regulating microbial and carbon-nitrogen cycling

Abstract

Soil carbon (C) and nitrogen (N) cycles and their complex responses to hydro-climatic forcing have gained increasing attention. While the temperature effects have been intensively studied, soil moisture response functions (SMRFs) are not well documented for various microbial and enzymatic processes due to the difficulties in directly measuring and differentiating the moisture effects on various processes. In this work we extended our C-only Microbial-ENzyme Decomposition (MEND) model to the C-N coupled MEND model with flexible element stoichiometry. Our model calibration showed good agreement between simulated and observed C:N ratios in soil organic matter and microbial biomass, as well as the ammonium and nitrate concentrations. We show that the selection of SMRFs for specific biogeochemical processes could result in significant differences in model simulated microbial and C-N processes. In particular, it is essential to account for the soil moisture effects on microbial dormancy and resuscitation, as the changes in microbial physiology under favorable or stressful conditions will exert strong controls on soil C and N dynamics. We also advocate the utilization of dynamic (time-variant) data (e.g., litter input, N deposition, soil temperature and moisture), instead of time-invariant data, to drive model simulations and analyses. Dynamic forcing data (particularly dynamic soil moisture)more » better represent the real-world climate and environmental conditions, which could facilitate more realistic modeling and understanding of soil C and nutrient cycling in a changing world.« less

Authors:
ORCiD logo [1];  [2];  [3]; ORCiD logo [4];  [5]
  1. Univ. of Oklahoma, Norman, OK (United States)
  2. Chinese Academy of Sciences (CAS), Guangzhou (China). South China Botanical Garden; Iowa State Univ., Ames, IA (United States)
  3. Nanjing Univ. of Information Science & Technology (China)
  4. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  5. Univ. of Oklahoma, Norman, OK (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Tsinghua Univ., Beijing (China)
Publication Date:
Research Org.:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); National Natural Science Foundation of China (NSFC)
OSTI Identifier:
1615210
Alternate Identifier(s):
OSTI ID: 1691633
Grant/Contract Number:  
AC05-00OR22725; SC0004730; SC001057; SC0004601; SC0014079; SC0016247; SC0010715; 31670487; 41430529; 31600353
Resource Type:
Accepted Manuscript
Journal Name:
Journal of Hydrology
Additional Journal Information:
Journal Volume: 585; Journal Issue: C; Journal ID: ISSN 0022-1694
Publisher:
Elsevier
Country of Publication:
United States
Language:
English
Subject:
54 ENVIRONMENTAL SCIENCES; Dynamic data; Microbial modeling; Microbial dormancy; Soil carbon and nitrogen; Soil microbe; Soil moisture

Citation Formats

Wang, Gangsheng, Huang, Wenjuan, Zhou, Guoyi, Mayes, Melanie A., and Zhou, Jizhong. Modeling the processes of soil moisture in regulating microbial and carbon-nitrogen cycling. United States: N. p., 2020. Web. doi:10.1016/j.jhydrol.2020.124777.
Wang, Gangsheng, Huang, Wenjuan, Zhou, Guoyi, Mayes, Melanie A., & Zhou, Jizhong. Modeling the processes of soil moisture in regulating microbial and carbon-nitrogen cycling. United States. https://doi.org/10.1016/j.jhydrol.2020.124777
Wang, Gangsheng, Huang, Wenjuan, Zhou, Guoyi, Mayes, Melanie A., and Zhou, Jizhong. Mon . "Modeling the processes of soil moisture in regulating microbial and carbon-nitrogen cycling". United States. https://doi.org/10.1016/j.jhydrol.2020.124777. https://www.osti.gov/servlets/purl/1615210.
@article{osti_1615210,
title = {Modeling the processes of soil moisture in regulating microbial and carbon-nitrogen cycling},
author = {Wang, Gangsheng and Huang, Wenjuan and Zhou, Guoyi and Mayes, Melanie A. and Zhou, Jizhong},
abstractNote = {Soil carbon (C) and nitrogen (N) cycles and their complex responses to hydro-climatic forcing have gained increasing attention. While the temperature effects have been intensively studied, soil moisture response functions (SMRFs) are not well documented for various microbial and enzymatic processes due to the difficulties in directly measuring and differentiating the moisture effects on various processes. In this work we extended our C-only Microbial-ENzyme Decomposition (MEND) model to the C-N coupled MEND model with flexible element stoichiometry. Our model calibration showed good agreement between simulated and observed C:N ratios in soil organic matter and microbial biomass, as well as the ammonium and nitrate concentrations. We show that the selection of SMRFs for specific biogeochemical processes could result in significant differences in model simulated microbial and C-N processes. In particular, it is essential to account for the soil moisture effects on microbial dormancy and resuscitation, as the changes in microbial physiology under favorable or stressful conditions will exert strong controls on soil C and N dynamics. We also advocate the utilization of dynamic (time-variant) data (e.g., litter input, N deposition, soil temperature and moisture), instead of time-invariant data, to drive model simulations and analyses. Dynamic forcing data (particularly dynamic soil moisture) better represent the real-world climate and environmental conditions, which could facilitate more realistic modeling and understanding of soil C and nutrient cycling in a changing world.},
doi = {10.1016/j.jhydrol.2020.124777},
journal = {Journal of Hydrology},
number = C,
volume = 585,
place = {United States},
year = {Mon Mar 02 00:00:00 EST 2020},
month = {Mon Mar 02 00:00:00 EST 2020}
}

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Works referenced in this record:

Multiple models and experiments underscore large uncertainty in soil carbon dynamics
journal, October 2018

  • Sulman, Benjamin N.; Moore, Jessica A. M.; Abramoff, Rose
  • Biogeochemistry, Vol. 141, Issue 2
  • DOI: 10.1007/s10533-018-0509-z

A theoretical analysis of microbial eco-physiological and diffusion limitations to carbon cycling in drying soils
journal, June 2014


Microbial stoichiometry overrides biomass as a regulator of soil carbon and nitrogen cycling
journal, April 2015

  • Buchkowski, Robert W.; Schmitz, Oswald J.; Bradford, Mark A.
  • Ecology, Vol. 96, Issue 4
  • DOI: 10.1890/14-1327.1

Mechanisms of real and apparent priming effects and their dependence on soil microbial biomass and community structure: critical review
journal, October 2008


Emerging tools for measuring and modeling the in situ activity of soil extracellular enzymes
journal, September 2008


Measurement of soil microbial biomass C by fumigation-extraction—an automated procedure
journal, January 1990


Drought decreases soil enzyme activity in a Mediterranean Quercus ilex L. forest
journal, March 2005


Changes to particulate versus mineral-associated soil carbon after 50 years of litter manipulation in forest and prairie experimental ecosystems
journal, March 2014


Soil-atmospheric exchange of CO2, CH4, and N2O in three subtropical forest ecosystems in southern China
journal, March 2006


Environmental and stoichiometric controls on microbial carbon-use efficiency in soils: Research review
journal, July 2012


Stoichiometric plasticity of microbial communities is similar between litter and soil in a tropical rainforest
journal, October 2017


Evaluating litter decomposition in earth system models with long-term litterbag experiments: an example using the Community Land Model version 4 (CLM4)
journal, October 2012

  • Bonan, Gordon B.; Hartman, Melannie D.; Parton, William J.
  • Global Change Biology, Vol. 19, Issue 3
  • DOI: 10.1111/gcb.12031

Quantifying global soil carbon losses in response to warming
journal, November 2016

  • Crowther, T. W.; Todd-Brown, K. E. O.; Rowe, C. W.
  • Nature, Vol. 540, Issue 7631
  • DOI: 10.1038/nature20150

Review of mechanisms and quantification of priming effects
journal, October 2000


Microbial Stress-Response Physiology and its Implications for Ecosystem Function
journal, June 2007

  • Schimel, Joshua; Balser, Teri C.; Wallenstein, Matthew
  • Ecology, Vol. 88, Issue 6
  • DOI: 10.1890/06-0219

Managing uncertainty in soil carbon feedbacks to climate change
journal, July 2016

  • Bradford, Mark A.; Wieder, William R.; Bonan, Gordon B.
  • Nature Climate Change, Vol. 6, Issue 8
  • DOI: 10.1038/nclimate3071

The Dual Arrhenius and Michaelis-Menten kinetics model for decomposition of soil organic matter at hourly to seasonal time scales
journal, October 2011


Soil moisture drives microbial controls on carbon decomposition in two subtropical forests
journal, March 2019


Litter and Root Manipulations Provide Insights into Soil Organic Matter Dynamics and Stability
journal, January 2014


Ammonia oxidation pathways and nitrifier denitrification are significant sources of N2O and NO under low oxygen availability
journal, April 2013

  • Zhu, X.; Burger, M.; Doane, T. A.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 16
  • DOI: 10.1073/pnas.1219993110

Evaluating the E3SM land model version 0 (ELMv0) at a temperate forest site using flux and soil water measurements
journal, January 2019

  • Liang, Junyi; Wang, Gangsheng; Ricciuto, Daniel M.
  • Geoscientific Model Development, Vol. 12, Issue 4
  • DOI: 10.5194/gmd-12-1601-2019

Microbial dormancy improves development and experimental validation of ecosystem model
journal, July 2014

  • Wang, Gangsheng; Jagadamma, Sindhu; Mayes, Melanie A.
  • The ISME Journal, Vol. 9, Issue 1
  • DOI: 10.1038/ismej.2014.120

A Review of Carbon and Nitrogen Processes in Four Soil Nitrogen Dynamics Models
journal, April 1998

  • Wu, L.; McGechan, M. B.
  • Journal of Agricultural Engineering Research, Vol. 69, Issue 4
  • DOI: 10.1006/jaer.1997.0250

The temperature response of soil microbial efficiency and its feedback to climate
journal, January 2013

  • Frey, Serita D.; Lee, Juhwan; Melillo, Jerry M.
  • Nature Climate Change, Vol. 3, Issue 4
  • DOI: 10.1038/nclimate1796

A method to quantify transesterification activities of lipases in litters
journal, August 2009


Accelerated microbial turnover but constant growth efficiency with warming in soil
journal, September 2014

  • Hagerty, Shannon B.; van Groenigen, Kees Jan; Allison, Steven D.
  • Nature Climate Change, Vol. 4, Issue 10
  • DOI: 10.1038/nclimate2361

Characteristics of soil CO2 efflux variability in an aseasonal tropical rainforest in Borneo Island
journal, September 2008


The application of ecological stoichiometry to plant–microbial–soil organic matter transformations
journal, May 2015

  • Zechmeister-Boltenstern, Sophie; Keiblinger, Katharina Maria; Mooshammer, Maria
  • Ecological Monographs, Vol. 85, Issue 2
  • DOI: 10.1890/14-0777.1

Modelling the survival of bacteria in drylands: the advantage of being dormant
journal, May 2002

  • Bär, M.; Hardenberg, J.; Meron, E.
  • Proceedings of the Royal Society of London. Series B: Biological Sciences, Vol. 269, Issue 1494
  • DOI: 10.1098/rspb.2002.1958

Parameter estimation for models of ligninolytic and cellulolytic enzyme kinetics
journal, May 2012


Reduced carbon use efficiency and increased microbial turnover with soil warming
journal, December 2018

  • Li, Jianwei; Wang, Gangsheng; Mayes, Melanie A.
  • Global Change Biology
  • DOI: 10.1111/gcb.14517

Old-Growth Forests Can Accumulate Carbon in Soils
journal, December 2006


An enzymic 'latch' on a global carbon store
journal, January 2001

  • Freeman, Chris; Ostle, Nick; Kang, Hojeong
  • Nature, Vol. 409, Issue 6817
  • DOI: 10.1038/35051650

C:N:P stoichiometry in soil: is there a “Redfield ratio” for the microbial biomass?
journal, July 2007


Ecosystem model spin-up: Estimating steady state conditions in a coupled terrestrial carbon and nitrogen cycle model
journal, November 2005


Evidence for strong seasonality in the carbon storage and carbon use efficiency of an Amazonian forest
journal, January 2014

  • Rowland, Lucy; Hill, Timothy Charles; Stahl, Clement
  • Global Change Biology, Vol. 20, Issue 3
  • DOI: 10.1111/gcb.12375

Weaker soil carbon–climate feedbacks resulting from microbial and abiotic interactions
journal, November 2014


Experimental warming altered rates of carbon processes, allocation, and carbon storage in a tallgrass prairie
journal, November 2015


Development of microbial-enzyme-mediated decomposition model parameters through steady-state and dynamic analyses
journal, January 2013

  • Wang, Gangsheng; Post, Wilfred M.; Mayes, Melanie A.
  • Ecological Applications, Vol. 23, Issue 1
  • DOI: 10.1890/12-0681.1

Soil-carbon response to warming dependent on microbial physiology
journal, April 2010

  • Allison, Steven D.; Wallenstein, Matthew D.; Bradford, Mark A.
  • Nature Geoscience, Vol. 3, Issue 5
  • DOI: 10.1038/ngeo846

Temperature response of soil respiration largely unaltered with experimental warming
journal, November 2016

  • Carey, Joanna C.; Tang, Jianwu; Templer, Pamela H.
  • Proceedings of the National Academy of Sciences, Vol. 113, Issue 48
  • DOI: 10.1073/pnas.1605365113

Incorporating dormancy in dynamic microbial community models
journal, September 2011


The role of nitrifier denitrification in the production of nitrous oxide revisited
journal, August 2018


Responses of soil heterotrophic respiration to moisture availability: An exploration of processes and models
journal, April 2013


Soil nutrient cycles as a nonlinear dynamical system
journal, January 2004

  • Manzoni, S.; Porporato, A.; D'Odorico, P.
  • Nonlinear Processes in Geophysics, Vol. 11, Issue 5/6
  • DOI: 10.5194/npg-11-589-2004

Long-term doubling of litter inputs accelerates soil organic matter degradation and reduces soil carbon stocks
journal, December 2015


A Closed-form Equation for Predicting the Hydraulic Conductivity of Unsaturated Soils1
journal, January 1980


Endoglucanase and β-glycosidase activities in an evergreen oak litter: annual variation and regulating factors
journal, August 2002


Hydrologic and water quality responses to biomass production in the Tennessee river basin
journal, August 2018

  • Wang, Gangsheng; Jager, Henriette I.; Baskaran, Latha M.
  • GCB Bioenergy, Vol. 10, Issue 11
  • DOI: 10.1111/gcbb.12537

Responses of soil microbial communities to water stress: results from a meta-analysis
journal, April 2012

  • Manzoni, Stefano; Schimel, Joshua P.; Porporato, Amilcare
  • Ecology, Vol. 93, Issue 4
  • DOI: 10.1890/11-0026.1

Adjustment of microbial nitrogen use efficiency to carbon:nitrogen imbalances regulates soil nitrogen cycling
journal, April 2014

  • Mooshammer, Maria; Wanek, Wolfgang; Hämmerle, Ieda
  • Nature Communications, Vol. 5, Issue 1
  • DOI: 10.1038/ncomms4694

Effective and efficient global optimization for conceptual rainfall-runoff models
journal, April 1992

  • Duan, Qingyun; Sorooshian, Soroosh; Gupta, Vijai
  • Water Resources Research, Vol. 28, Issue 4
  • DOI: 10.1029/91WR02985

The effect of water on enzyme action in organic media.
journal, June 1988