Draft Genome Sequence of the Biofuel-Relevant Microalga Desmodesmus armatus

Knoshaug, Eric P.; Nag, Ambarish; Astling, David P.; Douchi, Damien A.; Laurens, Lieve M.

doi:10.1128/MRA.00896-19

Title: Draft Genome Sequence of the Biofuel-Relevant Microalga Desmodesmus armatus

Abstract

A draft genome of 906 scaffolds of 115.8 Mb was created for Desmodesmus armatus, a diploid, lipid- and storage carbohydrate-accumulating microalga proven relevant for large-scale, outdoor cultivation, and serves as a model alga platform for improving photosynthetic efficiency and carbon assimilation for next-generation bioenergy production.

Authors:

^[1];

^[1]; Astling, David P. ^[2]; Douchi, Damien A. ^[1];

^[1]

National Renewable Energy Lab. (NREL), Golden, CO (United States)
Univ. of Colorado School of Medicine, Aurora, CO (United States)

Publication Date:: Thu Feb 06 00:00:00 EST 2020

Research Org.:: National Renewable Energy Laboratory (NREL), Golden, CO (United States)

Sponsoring Org.:: USDOE Office of Energy Efficiency and Renewable Energy (EERE), Sustainable Transportation Office. Bioenergy Technologies Office (BETO)

OSTI Identifier:: 1600126

Report Number(s):: NREL/JA-5100-74444
Journal ID: ISSN 2576-098X

Grant/Contract Number:: AC36-08GO28308

Resource Type:: Accepted Manuscript

Journal Name:: Microbiology Resource Announcements

Additional Journal Information:: Journal Volume: 9; Journal Issue: 6; Journal ID: ISSN 2576-098X

Publisher:: SSPA - American Society for Microbiology

Country of Publication:: United States

Language:: English

Subject:: 09 BIOMASS FUELS; algae; Desmodesmus genome; biofuels; ALPL

Citation Formats


                    Knoshaug, Eric P., Nag, Ambarish, Astling, David P., Douchi, Damien A., and Laurens, Lieve M. Draft Genome Sequence of the Biofuel-Relevant Microalga Desmodesmus armatus.  United States: N. p., 2020. 
Web.  doi:10.1128/MRA.00896-19.

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                    Knoshaug, Eric P., Nag, Ambarish, Astling, David P., Douchi, Damien A., & Laurens, Lieve M. Draft Genome Sequence of the Biofuel-Relevant Microalga Desmodesmus armatus.  United States.  https://doi.org/10.1128/MRA.00896-19

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                    Knoshaug, Eric P., Nag, Ambarish, Astling, David P., Douchi, Damien A., and Laurens, Lieve M. Thu .  
"Draft Genome Sequence of the Biofuel-Relevant Microalga Desmodesmus armatus".  United States.  https://doi.org/10.1128/MRA.00896-19.  https://www.osti.gov/servlets/purl/1600126.

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@article{osti_1600126,

  title        = {Draft Genome Sequence of the Biofuel-Relevant Microalga Desmodesmus armatus},

  author       = {Knoshaug, Eric P. and Nag, Ambarish and Astling, David P. and Douchi, Damien A. and Laurens, Lieve M.},

  abstractNote = {A draft genome of 906 scaffolds of 115.8 Mb was created for Desmodesmus armatus, a diploid, lipid- and storage carbohydrate-accumulating microalga proven relevant for large-scale, outdoor cultivation, and serves as a model alga platform for improving photosynthetic efficiency and carbon assimilation for next-generation bioenergy production.},

  doi          = {10.1128/MRA.00896-19},

  journal      = {Microbiology Resource Announcements},

  number       = 6,

  volume       = 9,

  place        = {United States},

  year         = {Thu Feb 06 00:00:00 EST 2020},

  month        = {Thu Feb 06 00:00:00 EST 2020}

}

Copy to clipboard

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Title: Draft Genome Sequence of the Biofuel-Relevant Microalga Desmodesmus armatus

Abstract

Citation Formats

Draft Genome Sequence of the Oleaginous Green Alga Tetradesmus obliquus UTEX 393 journal, January 2017

Phylogenetic Relationships of Scenedesmus and Scenedesmus-like Coccoid Green Algae as Inferred from ITS-2 rDNA Sequence Comparisons journal, July 1999

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Inferring Variation in Copy Number Using High Throughput Sequencing Data in R journal, April 2018

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Isolation of thermo-tolerant and high lipid content green microalgae: Oil accumulation is predominantly controlled by photosystem efficiency during stress treatments in Desmodesmus journal, November 2011

Microalgae as biodiesel & biomass feedstocks: Review & analysis of the biochemistry, energetics & economics journal, January 2010

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New combinations in the genus Desmodesmus (Chlorophyceae, Scenedesmaceae) [New combinations in the genus Desmodesmus (Chlorophyceae, Scenedesmaceae)] journal, January 2000

Combined algal processing: A novel integrated biorefinery process to produce algal biofuels and bioproducts journal, November 2016

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Acid-catalyzed algal biomass pretreatment for integrated lipid and carbohydrate-based biofuels production journal, January 2015

THE SYSTEMATICS OF A SMALL SPINELESS DESMODESMUS SPECIES, D. COSTATO-GRANULATUS (SPHAEROPLEALES, CHLOROPHYCEAE), BASED ON ITS2 rDNA SEQUENCE ANALYSES AND CELL WALL MORPHOLOGY journal, April 2007

Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: The existence of genes possibly involved in chloroplast division journal, May 1997

A revised secondary structure model for the internal transcribed spacer 2 of the green algae Scenedesmus and Desmodesmus and its implication for the phylogeny of these algae journal, April 2002

Draft Nuclear Genome, Complete Chloroplast Genome, and Complete Mitochondrial Genome for the Biofuel/Bioproduct Feedstock Species Scenedesmus obliquus Strain DOE0152z journal, August 2017

Genomic dna Isolation from Green and Brown Algae (Caulerpales and Fucales) for Microsatellite Library Construction1 journal, June 2006

Distribution of aliphatic, nonhydrolyzable biopolymers in marine microalgae journal, March 1999

NaCl as an effective inducer for lipid accumulation in freshwater microalgae Desmodesmus abundans journal, June 2014

Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production journal, January 2013

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Basis for the Resistance of Several Algae to Microbial Decomposition journal, January 1975

Phenotypic plasticity in the green algae Desmodesmus and Scenedesmus with special reference to the induction of defensive morphology journal, June 2003

Long-Term Cultivation of Algae in Open-Raceway Ponds: Lessons from the Field journal, August 2015

Multi-Level Light Capture Control in Plants and Green Algae journal, January 2016

Draft Genome Sequence of the Oleaginous Green Alga Tetradesmus obliquus UTEX 393
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Phylogenetic Relationships of Scenedesmus and Scenedesmus-like Coccoid Green Algae as Inferred from ITS-2 rDNA Sequence Comparisons
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Non-hydrolysable macromolecular constituents from outer walls of Chlorella fusca and Nanochlorum eucaryotum
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2017 Algae Harmonization Study: Evaluating the Potential for Future Algal Biofuel Costs, Sustainability, and Resource Assessment from Harmonized Modeling
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Selection of elite microalgae for biodiesel production in tropical conditions using a standardized platform
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Demonstrated large-scale production of marine microalgae for fuels and feed
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Growth and nitrogen removal capacity of Desmodesmus communis and of a natural microalgae consortium in a batch culture system in view of urban wastewater treatment: Part I
journal, February 2013

Unified field studies of the algae testbed public-private partnership as the benchmark for algae agronomics
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Isolation of thermo-tolerant and high lipid content green microalgae: Oil accumulation is predominantly controlled by photosystem efficiency during stress treatments in Desmodesmus
journal, November 2011

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journal, January 2010

Raman microscopy shows that nitrogen-rich cellular inclusions in microalgae are microcrystalline guanine
journal, April 2017

Phototrophic cultivation of a thermo-tolerant Desmodesmus sp. for lutein production: Effects of nitrate concentration, light intensity and fed-batch operation
journal, September 2013

New combinations in the genus Desmodesmus (Chlorophyceae, Scenedesmaceae) [New combinations in the genus Desmodesmus (Chlorophyceae, Scenedesmaceae)]
journal, January 2000

Combined algal processing: A novel integrated biorefinery process to produce algal biofuels and bioproducts
journal, November 2016

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journal, January 2015

THE SYSTEMATICS OF A SMALL SPINELESS DESMODESMUS SPECIES, D. COSTATO-GRANULATUS (SPHAEROPLEALES, CHLOROPHYCEAE), BASED ON ITS2 rDNA SEQUENCE ANALYSES AND CELL WALL MORPHOLOGY
journal, April 2007

Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: The existence of genes possibly involved in chloroplast division
journal, May 1997

A revised secondary structure model for the internal transcribed spacer 2 of the green algae Scenedesmus and Desmodesmus and its implication for the phylogeny of these algae
journal, April 2002

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journal, August 2017

Genomic dna Isolation from Green and Brown Algae (Caulerpales and Fucales) for Microsatellite Library Construction1
journal, June 2006

Distribution of aliphatic, nonhydrolyzable biopolymers in marine microalgae
journal, March 1999

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journal, June 2014

Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production
journal, January 2013

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journal, June 2003

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journal, August 2015

Multi-Level Light Capture Control in Plants and Green Algae
journal, January 2016