Conservation of Species- and Trait-Based Modeling Network Interactions in Extremely Acidic Microbial Community Assembly
Abstract
Understanding microbial interactions is essential to decipher the mechanisms of community assembly and their effects on ecosystem functioning, however, the conservation of species- and trait-based network interactions along environmental gradient remains largely unknown. Here, by using the network-based analyses with three paralleled data sets derived from 16S rRNA gene pyrosequencing, functional microarray, and predicted metagenome, we test our hypothesis that the network interactions of traits are more conserved than those of taxonomic measures, with significantly lower variation of network characteristics along the environmental gradient in acid mine drainage. The results showed that although the overall network characteristics remained similar, the structural variation was significantly lower at trait levels. The higher conserved individual node topological properties at trait level rather than at species level indicated that the responses of diverse traits remained relatively consistent even though different species played key roles under different environmental conditions. Additionally, the randomization tests revealed that it could not reject the null hypothesis that species-based correlations were random, while the tests suggested that correlation patterns of traits were non-random. Furthermore, relationships between trait-based network characteristics and environmental properties implied that trait-based networks might be more useful in reflecting the variation of ecosystem function. Taken together, ourmore »
- Authors:
-
- Sun Yat-Sen Univ., Guangzhou (China); Univ. of Oklahoma, Norman, OK (United States)
- Sun Yat-Sen Univ., Guangzhou (China); Univ. of Toronto-Scarborough, ON (Canada); Univ. of Toronto, ON (Canada)
- Sun Yat-Sen Univ., Guangzhou (China)
- Univ. of Oklahoma, Norman, OK (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Tsinghua Univ., Beijing (China)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC); National Natural Science Foundation of China (NSFC)
- OSTI Identifier:
- 1567095
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Microbiology
- Additional Journal Information:
- Journal Volume: 8; Journal Issue: AUG; Journal ID: ISSN 1664-302X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; community assembly; interacting relationship; network conservation; acid mine drainage
Citation Formats
Kuang, Jialiang, Cadotte, Marc W., Chen, Yongjian, Shu, Haoyue, Liu, Jun, Chen, Linxing, Hua, Zhengshuang, Shu, Wensheng, Zhou, Jizhong, and Huang, Linan. Conservation of Species- and Trait-Based Modeling Network Interactions in Extremely Acidic Microbial Community Assembly. United States: N. p., 2017.
Web. doi:10.3389/fmicb.2017.01486.
Kuang, Jialiang, Cadotte, Marc W., Chen, Yongjian, Shu, Haoyue, Liu, Jun, Chen, Linxing, Hua, Zhengshuang, Shu, Wensheng, Zhou, Jizhong, & Huang, Linan. Conservation of Species- and Trait-Based Modeling Network Interactions in Extremely Acidic Microbial Community Assembly. United States. https://doi.org/10.3389/fmicb.2017.01486
Kuang, Jialiang, Cadotte, Marc W., Chen, Yongjian, Shu, Haoyue, Liu, Jun, Chen, Linxing, Hua, Zhengshuang, Shu, Wensheng, Zhou, Jizhong, and Huang, Linan. Thu .
"Conservation of Species- and Trait-Based Modeling Network Interactions in Extremely Acidic Microbial Community Assembly". United States. https://doi.org/10.3389/fmicb.2017.01486. https://www.osti.gov/servlets/purl/1567095.
@article{osti_1567095,
title = {Conservation of Species- and Trait-Based Modeling Network Interactions in Extremely Acidic Microbial Community Assembly},
author = {Kuang, Jialiang and Cadotte, Marc W. and Chen, Yongjian and Shu, Haoyue and Liu, Jun and Chen, Linxing and Hua, Zhengshuang and Shu, Wensheng and Zhou, Jizhong and Huang, Linan},
abstractNote = {Understanding microbial interactions is essential to decipher the mechanisms of community assembly and their effects on ecosystem functioning, however, the conservation of species- and trait-based network interactions along environmental gradient remains largely unknown. Here, by using the network-based analyses with three paralleled data sets derived from 16S rRNA gene pyrosequencing, functional microarray, and predicted metagenome, we test our hypothesis that the network interactions of traits are more conserved than those of taxonomic measures, with significantly lower variation of network characteristics along the environmental gradient in acid mine drainage. The results showed that although the overall network characteristics remained similar, the structural variation was significantly lower at trait levels. The higher conserved individual node topological properties at trait level rather than at species level indicated that the responses of diverse traits remained relatively consistent even though different species played key roles under different environmental conditions. Additionally, the randomization tests revealed that it could not reject the null hypothesis that species-based correlations were random, while the tests suggested that correlation patterns of traits were non-random. Furthermore, relationships between trait-based network characteristics and environmental properties implied that trait-based networks might be more useful in reflecting the variation of ecosystem function. Taken together, our results suggest that deterministic trait-based community assembly results in greater conservation of network interaction, which may ensure ecosystem function across environmental regimes, emphasizing the potential importance of measuring the complexity and conservation of network interaction in evaluating the ecosystem stability and functioning.},
doi = {10.3389/fmicb.2017.01486},
journal = {Frontiers in Microbiology},
number = AUG,
volume = 8,
place = {United States},
year = {Thu Aug 10 00:00:00 EDT 2017},
month = {Thu Aug 10 00:00:00 EDT 2017}
}
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