Structural and biochemical characterization of 20β-hydroxysteroid dehydrogenase from Bifidobacterium adolescentis strain L2-32
Abstract
Anaerobic bacteria inhabiting the human gastrointestinal tract have evolved various enzymes that modify host-derived steroids. The bacterial steroid-17,20-desmolase pathway cleaves the cortisol side chain, forming pro-androgens predicted to impact host physiology. Bacterial 20β-hydroxysteroid dehydrogenase (20β-HSDH) regulates cortisol side-chain cleavage by reducing the C-20 carboxyl group on cortisol, yielding 20β-dihydrocortisol. Recently, the gene encoding 20β-HSDH in Butyricicoccus desmolans ATCC 43058 was reported, and a nonredundant protein search yielded a candidate 20β-HSDH gene in Bifidobacterium adolescentis strain L2-32. B. adolescentis 20β-HSDH could regulate cortisol side-chain cleavage by limiting pro-androgen formation in bacteria such as Clostridium scindens and 21-dehydroxylation by Eggerthella lenta. In this work, the putative B. adolescentis 20β-HSDH was cloned, overexpressed, and purified. 20β-HSDH activity was confirmed through whole-cell and pure enzymatic assays, and it is specific for cortisol. Next, we solved the structures of recombinant 20β-HSDH in both the apo- and holo-forms at 2.0–2.2 Å resolutions, revealing close overlap except for rearrangements near the active site. Interestingly, the structures contain a large, flexible N-terminal region that was investigated by gel-filtration chromatography and CD spectroscopy. This extended N terminus is important for protein stability because deletions of varying lengths caused structural changes and reduced enzymatic activity. A nonconserved extended N terminusmore »
- Authors:
-
- Carl R. Woese Inst. for Genomic Biology, Urbana, IL (United States); Univ. of Illinois at Urbana-Champaign, IL (United States)
- Univ. of Michigan Medical School, Ann Arbor, MI (United States)
- Northwestern Univ., Argonne, IL (United States). Northwestern Synchrotron Research Center–LS-CAT
- Publication Date:
- Research Org.:
- Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
- Sponsoring Org.:
- University of Illinois at Urbana-Champaign
- OSTI Identifier:
- 1557315
- Grant/Contract Number:
- Hatch ILLU-538-916
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Journal of Biological Chemistry
- Additional Journal Information:
- Journal Volume: 294; Journal Issue: 32; Journal ID: ISSN 0021-9258
- Publisher:
- American Society for Biochemistry and Molecular Biology
- Country of Publication:
- United States
- Language:
- ENGLISH
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; microbiome; probiotic; androgen; glucocorticoid; oxidation–reduction (redox); 20β-hydroxysteroid dehydrogenase; Bifidobacteria; C-20 reduction; cortisol; Steroid-17,20-desmolase
Citation Formats
Doden, Heidi L., Pollet, Rebecca M., Mythen, Sean M., Wawrzak, Zdzislaw, Devendran, Saravanan, Cann, Isaac, Koropatkin, Nicole M., and Ridlon, Jason M. Structural and biochemical characterization of 20β-hydroxysteroid dehydrogenase from Bifidobacterium adolescentis strain L2-32. United States: N. p., 2019.
Web. doi:10.1074/jbc.ra119.009390.
Doden, Heidi L., Pollet, Rebecca M., Mythen, Sean M., Wawrzak, Zdzislaw, Devendran, Saravanan, Cann, Isaac, Koropatkin, Nicole M., & Ridlon, Jason M. Structural and biochemical characterization of 20β-hydroxysteroid dehydrogenase from Bifidobacterium adolescentis strain L2-32. United States. https://doi.org/10.1074/jbc.ra119.009390
Doden, Heidi L., Pollet, Rebecca M., Mythen, Sean M., Wawrzak, Zdzislaw, Devendran, Saravanan, Cann, Isaac, Koropatkin, Nicole M., and Ridlon, Jason M. Mon .
"Structural and biochemical characterization of 20β-hydroxysteroid dehydrogenase from Bifidobacterium adolescentis strain L2-32". United States. https://doi.org/10.1074/jbc.ra119.009390. https://www.osti.gov/servlets/purl/1557315.
@article{osti_1557315,
title = {Structural and biochemical characterization of 20β-hydroxysteroid dehydrogenase from Bifidobacterium adolescentis strain L2-32},
author = {Doden, Heidi L. and Pollet, Rebecca M. and Mythen, Sean M. and Wawrzak, Zdzislaw and Devendran, Saravanan and Cann, Isaac and Koropatkin, Nicole M. and Ridlon, Jason M.},
abstractNote = {Anaerobic bacteria inhabiting the human gastrointestinal tract have evolved various enzymes that modify host-derived steroids. The bacterial steroid-17,20-desmolase pathway cleaves the cortisol side chain, forming pro-androgens predicted to impact host physiology. Bacterial 20β-hydroxysteroid dehydrogenase (20β-HSDH) regulates cortisol side-chain cleavage by reducing the C-20 carboxyl group on cortisol, yielding 20β-dihydrocortisol. Recently, the gene encoding 20β-HSDH in Butyricicoccus desmolans ATCC 43058 was reported, and a nonredundant protein search yielded a candidate 20β-HSDH gene in Bifidobacterium adolescentis strain L2-32. B. adolescentis 20β-HSDH could regulate cortisol side-chain cleavage by limiting pro-androgen formation in bacteria such as Clostridium scindens and 21-dehydroxylation by Eggerthella lenta. In this work, the putative B. adolescentis 20β-HSDH was cloned, overexpressed, and purified. 20β-HSDH activity was confirmed through whole-cell and pure enzymatic assays, and it is specific for cortisol. Next, we solved the structures of recombinant 20β-HSDH in both the apo- and holo-forms at 2.0–2.2 Å resolutions, revealing close overlap except for rearrangements near the active site. Interestingly, the structures contain a large, flexible N-terminal region that was investigated by gel-filtration chromatography and CD spectroscopy. This extended N terminus is important for protein stability because deletions of varying lengths caused structural changes and reduced enzymatic activity. A nonconserved extended N terminus was also observed in several short-chain dehydrogenase/reductase family members. B. adolescentis strains capable of 20β-HSDH activity could alter glucocorticoid metabolism in the gut and thereby serve as potential probiotics for the management of androgen-dependent diseases.},
doi = {10.1074/jbc.ra119.009390},
journal = {Journal of Biological Chemistry},
number = 32,
volume = 294,
place = {United States},
year = {Mon Jun 17 00:00:00 EDT 2019},
month = {Mon Jun 17 00:00:00 EDT 2019}
}
Web of Science
Works referenced in this record:
Corticosteroids in Human Blood. VIII. Cortisol Metabolites in Plasma of Normotensive Subjects and Patients with Essential Hypertension 1
journal, June 1975
- Kornel, Ludwig; Miyabo, Susumu; Saito, Zenzo
- The Journal of Clinical Endocrinology & Metabolism, Vol. 40, Issue 6
Protein secondary structure analyses from circular dichroism spectroscopy: Methods and reference databases
journal, May 2008
- Whitmore, Lee; Wallace, B. A.
- Biopolymers, Vol. 89, Issue 5, p. 392-400
Short-chain dehydrogenases/reductases (SDRs): Coenzyme-based functional assignments in completed genomes
journal, September 2002
- Kallberg, Yvonne; Oppermann, Udo; Jörnvall, Hans
- European Journal of Biochemistry, Vol. 269, Issue 18
Genomic Insights into Bifidobacteria
journal, August 2010
- Lee, J. -H.; O'Sullivan, D. J.
- Microbiology and Molecular Biology Reviews, Vol. 74, Issue 3
Overview of the CCP 4 suite and current developments
journal, March 2011
- Winn, Martyn D.; Ballard, Charles C.; Cowtan, Kevin D.
- Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4
Three-dimensional structure of holo 3 alpha,20 beta-hydroxysteroid dehydrogenase: a member of a short-chain dehydrogenase family.
journal, November 1991
- Ghosh, D.; Weeks, C. M.; Grochulski, P.
- Proceedings of the National Academy of Sciences, Vol. 88, Issue 22
Zebrafish 20β-Hydroxysteroid Dehydrogenase Type 2 Is Important for Glucocorticoid Catabolism in Stress Response
journal, January 2013
- Tokarz, Janina; Norton, William; Möller, Gabriele
- PLoS ONE, Vol. 8, Issue 1
Biosynthesis of Androgen from Cortisol by a Species of Clostridium Recovered From Human Fecal Flora
journal, April 1984
- Bokkenheuser, V. D.; Morris, G. N.; Ritchie, A. E.
- Journal of Infectious Diseases, Vol. 149, Issue 4
Deciphering key features in protein structures with the new ENDscript server
journal, April 2014
- Robert, Xavier; Gouet, Patrice
- Nucleic Acids Research, Vol. 42, Issue W1
Clostridium scindens : a human gut microbe with a high potential to convert glucocorticoids into androgens
journal, June 2013
- Ridlon, Jason M.; Ikegawa, Shigeo; Alves, João M. P.
- Journal of Lipid Research, Vol. 54, Issue 9
11-Ketotestosterone and 11-Ketodihydrotestosterone in Castration Resistant Prostate Cancer: Potent Androgens Which Can No Longer Be Ignored
journal, July 2016
- Pretorius, Elzette; Africander, Donita J.; Vlok, Maré
- PLOS ONE, Vol. 11, Issue 7
Glucocorticoids and gut bacteria: “The GALF Hypothesis” in the metagenomic era
journal, September 2017
- Morris, David J.; Ridlon, Jason M.
- Steroids, Vol. 125
Features and development of Coot
journal, March 2010
- Emsley, P.; Lohkamp, B.; Scott, W. G.
- Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 4
Endogenous selective inhibitors of 11β-hydroxysteroid dehydrogenase isoforms 1 and 2 of adrenal origin
journal, November 2005
- Latif, Syed A.; Pardo, Hector A.; Hardy, Matthew P.
- Molecular and Cellular Endocrinology, Vol. 243, Issue 1-2
Next-generation probiotics: the spectrum from probiotics to live biotherapeutics
journal, April 2017
- O’Toole, Paul W.; Marchesi, Julian R.; Hill, Colin
- Nature Microbiology, Vol. 2, Issue 5
Molecular symmetry of glyceraldehyde-3-phosphate dehydrogenase
journal, February 1972
- Rossmann, Michael G.; Ford, Geoffrey C.; Watson, Herman C.
- Journal of Molecular Biology, Vol. 64, Issue 1
Towards automated crystallographic structure refinement with phenix.refine
journal, March 2012
- Afonine, Pavel V.; Grosse-Kunstleve, Ralf W.; Echols, Nathaniel
- Acta Crystallographica Section D Biological Crystallography, Vol. 68, Issue 4
Characterization of a C21 neutral steroid hormone transforming enzyme, 21-dehydroxylase, in crude cell extracts of Eubacterium lentum
journal, July 1979
- Feighner, S. D.; Bokkenheuser, V. D.; Winter, J.
- Biochimica et Biophysica Acta (BBA) - Lipids and Lipid Metabolism, Vol. 574, Issue 1
Nuclear receptors, intestinal architecture and colon cancer: an intriguing link
journal, February 2008
- D’Errico, I.; Moschetta, A.
- Cellular and Molecular Life Sciences, Vol. 65, Issue 10
PHENIX: a comprehensive Python-based system for macromolecular structure solution
journal, January 2010
- Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor
- Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2, p. 213-221
11β-Hydroxydihydrotestosterone and 11-ketodihydrotestosterone, novel C19 steroids with androgenic activity: A putative role in castration resistant prostate cancer?
journal, September 2013
- Storbeck, Karl-Heinz; Bloem, Liezl M.; Africander, Donita
- Molecular and Cellular Endocrinology, Vol. 377, Issue 1-2
Mechanism of inhibition of 3α,20β-hydroxysteroid dehydrogenaseby a licorice-derived steroidal inhibitor
journal, October 1994
- Ghosh, Debashis; Erman, Mary; Wawrzak, Zdzislaw
- Structure, Vol. 2, Issue 10
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
journal, June 1998
- Cole, S. T.; Brosch, R.; Parkhill, J.
- Nature, Vol. 393, Issue 6685
Characterization of the Normal Temporal Pattern of Plasma Corticosteroid Levels
journal, February 1971
- Krieger, Dorothy T.; Allen, William; Rizzo, Frank
- The Journal of Clinical Endocrinology & Metabolism, Vol. 32, Issue 2
Consequences of bile salt biotransformations by intestinal bacteria
journal, January 2016
- Ridlon, Jason M.; Harris, Spencer C.; Bhowmik, Shiva
- Gut Microbes, Vol. 7, Issue 1
The desA and desB genes from Clostridium scindens ATCC 35704 encode steroid-17,20-desmolase
journal, March 2018
- Devendran, Saravanan; Mythen, Sean M.; Ridlon, Jason M.
- Journal of Lipid Research, Vol. 59, Issue 6
Crystal structure of a carbonyl reductase from Candida parapsilosis with anti-Prelog stereospecificity
journal, August 2008
- Zhang, Rongzhen; Zhu, Guangyu; Zhang, Wenchi
- Protein Science, Vol. 17, Issue 8
Formation of 20β-dihydrosteroids by anaerobic bacteria
journal, December 1982
- Winter, Jeanette; Cerone-McLernon, Anna; O'Rourke, Sheryl
- Journal of Steroid Biochemistry, Vol. 17, Issue 6
Development of the Normal Intestinal Flora and Clinical Significance in Infants and Children
journal, January 1991
- Yoshioka, Hajime; Fujita, Kozo; Sakata, Hiroshi
- Bifidobacteria and Microflora, Vol. 10, Issue 1
Molecular Endocrinology of Hydroxysteroid Dehydrogenases
journal, June 1997
- Penning, T. M.
- Endocrine Reviews, Vol. 18, Issue 3
A biosynthetic pathway for a prominent class of microbiota-derived bile acids
journal, July 2015
- Devlin, A. Sloan; Fischbach, Michael A.
- Nature Chemical Biology, Vol. 11, Issue 9
Identification and characterization of a 20β-HSDH from the anaerobic gut bacterium Butyricicoccus desmolans ATCC 43058
journal, March 2017
- Devendran, Saravanan; Méndez-García, Celia; Ridlon, Jason M.
- Journal of Lipid Research, Vol. 58, Issue 5
Structural basis of stereospecific reduction by quinuclidinone reductase
journal, January 2014
- Takeshita, Daijiro; Kataoka, Michihiko; Miyakawa, Takuya
- AMB Express, Vol. 4, Issue 1
The EMBL-EBI bioinformatics web and programmatic tools framework
journal, April 2015
- Li, Weizhong; Cowley, Andrew; Uludag, Mahmut
- Nucleic Acids Research, Vol. 43, Issue W1
Data processing and analysis with the autoPROC toolbox
journal, March 2011
- Vonrhein, Clemens; Flensburg, Claus; Keller, Peter
- Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4
Limb proportions show developmental plasticity in response to embryo movement
journal, February 2017
- Pollard, A. S.; Charlton, B. G.; Hutchinson, J. R.
- Scientific Reports, Vol. 7, Issue 1
A new dawn for androgens: Novel lessons from 11-oxygenated C19 steroids
journal, February 2017
- Pretorius, Elzette; Arlt, Wiebke; Storbeck, Karl-Heinz
- Molecular and Cellular Endocrinology, Vol. 441
[20] Processing of X-ray diffraction data collected in oscillation mode
book, January 1997
- Otwinowski, Zbyszek; Minor, Wladek
- Macromolecular Crystallography Part A, 307-326
Critical Residues for Structure and Catalysis in Short-chain Dehydrogenases/Reductases
journal, April 2002
- Filling, Charlotta; Berndt, Kurt D.; Benach, Jordi
- Journal of Biological Chemistry, Vol. 277, Issue 28
Phaser crystallographic software
journal, July 2007
- McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D.
- Journal of Applied Crystallography, Vol. 40, Issue 4
Quantitative metabolic profiling of 21 endogenous corticosteroids in urine by liquid chromatography–triple quadrupole-mass spectrometry
journal, January 2009
- Cho, Hye-Jin; Kim, Jong Dae; Lee, Won-Yong
- Analytica Chimica Acta, Vol. 632, Issue 1
Urinary Excretion of β-Cortolone (3α,17α, 20β,21-Tetrahydroxypregnane-11-One) in Young and Elderly men and Women*
journal, July 1959
- Romanoff, Louise P.; Parent, Claudette; Rodriguez, Rosa M.
- The Journal of Clinical Endocrinology & Metabolism, Vol. 19, Issue 7
Targeted Synthesis and Characterization of a Gene Cluster Encoding NAD(P)H-Dependent 3α-, 3β-, and 12α-Hydroxysteroid Dehydrogenases from Eggerthella CAG:298, a Gut Metagenomic Sequence
journal, January 2018
- Mythen, Sean M.; Devendran, Saravanan; Méndez-García, Celia
- Applied and Environmental Microbiology, Vol. 84, Issue 7