Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi

Mondo, Stephen J.; Lastovetsky, Olga A.; Gaspar, Maria L.; Schwardt, Nicole H.; Barber, Colin C.; Riley, Robert; Sun, Hui; Grigoriev, Igor V.; Pawlowska, Teresa E.

doi:10.1038/s41467-017-02052-8

Title: Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi

Abstract

Many heritable mutualisms, in which beneficial symbionts are transmitted vertically between host generations, originate as antagonisms with parasite dispersal constrained by the host. Only after the parasite gains control over its transmission is the symbiosis expected to transition from antagonism to mutualism. Here, we explore this prediction in the mutualism between the fungus Rhizopus microsporus (Rm, Mucoromycotina) and a beta-proteobacterium Burkholderia, which controls host asexual reproduction. We show that reproductive addiction of Rm to endobacteria extends to mating, and is mediated by the symbiont gaining transcriptional control of the fungal ras2 gene, which encodes a GTPase central to fungal reproductive development. We also discover candidate G-protein-coupled receptors for the perception of trisporic acids, mating pheromones unique to Mucoromycotina. Our results demonstrate that regulating host asexual proliferation and modifying its sexual reproduction are sufficient for the symbiont's control of its own transmission, needed for antagonism-to-mutualism transition in heritable symbioses. These properties establish the Rm-Burkholderia symbiosis as a powerful system for identifying reproductive genes in Mucoromycotina.

Authors:

Mondo, Stephen J. ^[1]; Lastovetsky, Olga A. ^[2]; Gaspar, Maria L. ^[2]; Schwardt, Nicole H. ^[2]; Barber, Colin C. ^[2]; Riley, Robert ^[3]; Sun, Hui ^[3];

^[4];

^[2]

Cornell Univ., Ithaca, NY (United States); USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
Cornell Univ., Ithaca, NY (United States)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Berkeley, CA (United States)

Publication Date:: Wed Nov 29 00:00:00 EST 2017

Research Org.:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC); Univ. of California, Oakland, CA (United States)

Sponsoring Org.:: USDOE Office of Science (SC)

OSTI Identifier:: 1543744

Alternate Identifier(s):: OSTI ID: 1619081

Grant/Contract Number:: AC02-05CH11231

Resource Type:: Accepted Manuscript

Journal Name:: Nature Communications

Additional Journal Information:: Journal Volume: 8; Journal Issue: 1; Journal ID: ISSN 2041-1723

Publisher:: Nature Publishing Group

Country of Publication:: United States

Language:: English

Subject:: 59 BASIC BIOLOGICAL SCIENCES; Science & Technology; Other Topics

Citation Formats


                    Mondo, Stephen J., Lastovetsky, Olga A., Gaspar, Maria L., Schwardt, Nicole H., Barber, Colin C., Riley, Robert, Sun, Hui, Grigoriev, Igor V., and Pawlowska, Teresa E. Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi.  United States: N. p., 2017. 
Web.  doi:10.1038/s41467-017-02052-8.

Copy to clipboard


                    Mondo, Stephen J., Lastovetsky, Olga A., Gaspar, Maria L., Schwardt, Nicole H., Barber, Colin C., Riley, Robert, Sun, Hui, Grigoriev, Igor V., & Pawlowska, Teresa E. Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi.  United States.  https://doi.org/10.1038/s41467-017-02052-8

Copy to clipboard


                    Mondo, Stephen J., Lastovetsky, Olga A., Gaspar, Maria L., Schwardt, Nicole H., Barber, Colin C., Riley, Robert, Sun, Hui, Grigoriev, Igor V., and Pawlowska, Teresa E. Wed .  
"Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi".  United States.  https://doi.org/10.1038/s41467-017-02052-8.  https://www.osti.gov/servlets/purl/1543744.

Copy to clipboard


                    
@article{osti_1543744,

  title        = {Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi},

  author       = {Mondo, Stephen J. and Lastovetsky, Olga A. and Gaspar, Maria L. and Schwardt, Nicole H. and Barber, Colin C. and Riley, Robert and Sun, Hui and Grigoriev, Igor V. and Pawlowska, Teresa E.},

  abstractNote = {Many heritable mutualisms, in which beneficial symbionts are transmitted vertically between host generations, originate as antagonisms with parasite dispersal constrained by the host. Only after the parasite gains control over its transmission is the symbiosis expected to transition from antagonism to mutualism. Here, we explore this prediction in the mutualism between the fungus Rhizopus microsporus (Rm, Mucoromycotina) and a beta-proteobacterium Burkholderia, which controls host asexual reproduction. We show that reproductive addiction of Rm to endobacteria extends to mating, and is mediated by the symbiont gaining transcriptional control of the fungal ras2 gene, which encodes a GTPase central to fungal reproductive development. We also discover candidate G-protein-coupled receptors for the perception of trisporic acids, mating pheromones unique to Mucoromycotina. Our results demonstrate that regulating host asexual proliferation and modifying its sexual reproduction are sufficient for the symbiont's control of its own transmission, needed for antagonism-to-mutualism transition in heritable symbioses. These properties establish the Rm-Burkholderia symbiosis as a powerful system for identifying reproductive genes in Mucoromycotina.},

  doi          = {10.1038/s41467-017-02052-8},

  journal      = {Nature Communications},

  number       = 1,

  volume       = 8,

  place        = {United States},

  year         = {Wed Nov 29 00:00:00 EST 2017},

  month        = {Wed Nov 29 00:00:00 EST 2017}

}

Copy to clipboard

Journal Article:

Free Publicly Available Full Text

Accepted Manuscript (DOE)

Publisher's Version of Record

https://doi.org/10.1038/s41467-017-02052-8

Other availability

Search WorldCat to find libraries that may hold this journal

Citation Metrics:

Cited by: 40 works

Citation information provided by
Web of Science

Save / Share:

Export Metadata

Save to My Library

Works referenced in this record:

Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
journal, January 1997

Nielsen, H.; Engelbrecht, J.; Brunak, S.
Protein Engineering Design and Selection, Vol. 10, Issue 1, p. 1-6
DOI: 10.1093/protein/10.1.1

The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont
journal, November 2011

Tisserant, E.; Kohler, A.; Dozolme-Seddas, P.
New Phytologist, Vol. 193, Issue 3
DOI: 10.1111/j.1469-8137.2011.03948.x

Ab initio Gene Finding in Drosophila Genomic DNA
journal, April 2000

Salamov, Asaf A.; Solovyev, Victor V.
Genome Research, Vol. 10, Issue 4, p. 516-522
DOI: 10.1101/gr.10.4.516

A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood Approach
journal, May 2001

Whelan, Simon; Goldman, Nick
Molecular Biology and Evolution, Vol. 18, Issue 5
DOI: 10.1093/oxfordjournals.molbev.a003851

[Ｒｈｉｚｏｐｕｓ　ｃｈｉｎｅｎｓｉｓ　Ｓａｉｔｏによるイネ苗立枯病り病根の組織学的観察]<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1980-01-01">January 1980</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Noda, Takahito; Hashiba, Teruyoshi; Sato, Zenji</span> </li> <li> Japanese Journal of Phytopathology, Vol. 46, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.3186/jjphytopath.46.40" class="text-muted" target="_blank" rel="noopener noreferrer">10.3186/jjphytopath.46.40<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1101/gr.1224503" target="_blank" rel="noopener noreferrer" class="name">OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2003-09-01">September 2003</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Li, L.</span> </li> <li> Genome Research, Vol. 13, Issue 9</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1101/gr.1224503" class="text-muted" target="_blank" rel="noopener noreferrer">10.1101/gr.1224503<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/molbev/msp077" target="_blank" rel="noopener noreferrer" class="name">FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2009-04-17">April 2009</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Price, M. N.; Dehal, P. S.; Arkin, A. P.</span> </li> <li> Molecular Biology and Evolution, Vol. 26, Issue 7</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/molbev/msp077" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/molbev/msp077<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/nature724" target="_blank" rel="noopener noreferrer" class="name">The genome sequence of Schizosaccharomyces pombe<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2002-02-01">February 2002</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Wood, V.; Gwilliam, R.; Rajandream, M. -A.</span> </li> <li> Nature, Vol. 415, Issue 6874</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/nature724" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/nature724<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1046/j.1365-294x.1998.00410.x" target="_blank" rel="noopener noreferrer" class="name">Characterization of root colonization profiles by a microcosm community of arbuscular mycorrhizal fungi using 25S rDNA‐targeted nested PCR<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1998-07-01">July 1998</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Van Tuinen, D.; Jacquot, E.; Zhao, B.</span> </li> <li> Molecular Ecology, Vol. 7, Issue 7</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1046/j.1365-294x.1998.00410.x" class="text-muted" target="_blank" rel="noopener noreferrer">10.1046/j.1365-294x.1998.00410.x<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/nar/gkm882" target="_blank" rel="noopener noreferrer" class="name">KEGG for linking genomes to life and the environment<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2007-12-23">December 2007</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Kanehisa, M.; Araki, M.; Goto, S.</span> </li> <li> Nucleic Acids Research, Vol. 36, Issue Database</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/nar/gkm882" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/nar/gkm882<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1186/gb-2010-11-10-r106" target="_blank" rel="noopener noreferrer" class="name">Differential expression analysis for sequence count data<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2010-10-01">October 2010</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Anders, Simon; Huber, Wolfgang</span> </li> <li> Genome Biology, Vol. 11, Issue 10</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1186/gb-2010-11-10-r106" class="text-muted" target="_blank" rel="noopener noreferrer">10.1186/gb-2010-11-10-r106<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1073/pnas.0510813103" target="_blank" rel="noopener noreferrer" class="name">Retinoic acid regulates sex-specific timing of meiotic initiation in mice<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2006-02-06">February 2006</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Koubova, J.; Menke, D. B.; Zhou, Q.</span> </li> <li> Proceedings of the National Academy of Sciences, Vol. 103, Issue 8</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1073/pnas.0510813103" class="text-muted" target="_blank" rel="noopener noreferrer">10.1073/pnas.0510813103<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1073/pnas.1017351108" target="_blank" rel="noopener noreferrer" class="name">High-quality draft assemblies of mammalian genomes from massively parallel sequence data<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2010-12-27">December 2010</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Gnerre, S.; MacCallum, I.; Przybylski, D.</span> </li> <li> Proceedings of the National Academy of Sciences, Vol. 108, Issue 4</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1073/pnas.1017351108" class="text-muted" target="_blank" rel="noopener noreferrer">10.1073/pnas.1017351108<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1111/j.1574-6976.2008.00131.x" target="_blank" rel="noopener noreferrer" class="name">Magnificent seven: roles of G protein-coupled receptors in extracellular sensing in fungi<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2008-11-01">November 2008</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Xue, Chaoyang; Hsueh, Yen-Ping; Heitman, Joseph</span> </li> <li> FEMS Microbiology Reviews, Vol. 32, Issue 6</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1111/j.1574-6976.2008.00131.x" class="text-muted" target="_blank" rel="noopener noreferrer">10.1111/j.1574-6976.2008.00131.x<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1073/pnas.1003391107" target="_blank" rel="noopener noreferrer" class="name">Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2010-06-14">June 2010</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Stajich, J. E.; Wilke, S. K.; Ahren, D.</span> </li> <li> Proceedings of the National Academy of Sciences, Vol. 107, Issue 26</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1073/pnas.1003391107" class="text-muted" target="_blank" rel="noopener noreferrer">10.1073/pnas.1003391107<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1002/anie.201204540" target="_blank" rel="noopener noreferrer" class="name">Symbiotic Cooperation in the Biosynthesis of a Phytotoxin<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2012-08-22">August 2012</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Scherlach, Kirstin; Busch, Benjamin; Lackner, Gerald</span> </li> <li> Angewandte Chemie International Edition, Vol. 51, Issue 38</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1002/anie.201204540" class="text-muted" target="_blank" rel="noopener noreferrer">10.1002/anie.201204540<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/nature04341" target="_blank" rel="noopener noreferrer" class="name">Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2005-12-01">December 2005</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Galagan, James E.; Calvo, Sarah E.; Cuomo, Christina</span> </li> <li> Nature, Vol. 438, Issue 7071</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/nature04341" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/nature04341<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/nar/gkw1218" target="_blank" rel="noopener noreferrer" class="name">GPCRdb: an information system for G protein-coupled receptors<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2016-12-06">December 2016</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Isberg, Vignir; Mordalski, Stefan; Munk, Christian</span> </li> <li> Nucleic Acids Research, Vol. 45, Issue 5</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/nar/gkw1218" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/nar/gkw1218<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.18154/rwth-2021-02761" target="_blank" rel="noopener noreferrer" class="name">Genome-scale model reconstruction of the methylotrophic yeast Ogataea polymorpha<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">text</span>, <span class="date" data-date="2021-01-01">January 2021</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Liebal, Ulf Winfried; Fabry, Brigida A.; Ravikrishnan, Aarthi</span> </li> <li> RWTH Aachen University</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.18154/rwth-2021-02761" class="text-muted" target="_blank" rel="noopener noreferrer">10.18154/rwth-2021-02761<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/nature01554" target="_blank" rel="noopener noreferrer" class="name">The genome sequence of the filamentous fungus Neurospora crassa<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2003-04-01">April 2003</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Galagan, James E.; Calvo, Sarah E.; Borkovich, Katherine A.</span> </li> <li> Nature, Vol. 422, Issue 6934</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/nature01554" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/nature01554<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1128/MCB.00117-06" target="_blank" rel="noopener noreferrer" class="name">Actin-Induced Hyperactivation of the Ras Signaling Pathway Leads to Apoptosis in Saccharomyces cerevisiae<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2006-08-16">August 2006</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Gourlay, C. W.; Ayscough, K. R.</span> </li> <li> Molecular and Cellular Biology, Vol. 26, Issue 17</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1128/MCB.00117-06" class="text-muted" target="_blank" rel="noopener noreferrer">10.1128/MCB.00117-06<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1016/j.cell.2008.09.002" target="_blank" rel="noopener noreferrer" class="name">Retinoic Acid Synthesis and Signaling during Early Organogenesis<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2008-09-01">September 2008</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Duester, Gregg</span> </li> <li> Cell, Vol. 134, Issue 6</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1016/j.cell.2008.09.002" class="text-muted" target="_blank" rel="noopener noreferrer">10.1016/j.cell.2008.09.002<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/nar/25.5.0955" target="_blank" rel="noopener noreferrer" class="name">tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1997-03-01">March 1997</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Lowe, Todd M.; Eddy, Sean R.</span> </li> <li> Nucleic Acids Research, Vol. 25, Issue 5</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/nar/25.5.0955" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/nar/25.5.0955<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1128/jb.114.3.1074-1082.1973" target="_blank" rel="noopener noreferrer" class="name">Trisporic Acid Biosynthesis in Separate Plus and Minus Cultures of Blakeslea trispora: Identification by Mucor Assay of Two Mating-Type-Specific Components<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1973-01-01">January 1973</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Sutter, Richard P.; Capage, Domenick A.; Harrison, Thomas L.</span> </li> <li> Journal of Bacteriology, Vol. 114, Issue 3</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1128/jb.114.3.1074-1082.1973" class="text-muted" target="_blank" rel="noopener noreferrer">10.1128/jb.114.3.1074-1082.1973<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/s42003-022-03461-2" target="_blank" rel="noopener noreferrer" class="name">Salinity tolerance mechanisms of an Arctic Pelagophyte using comparative transcriptomic and gene expression analysis<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2022-05-25">May 2022</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Freyria, Nastasia J.; Kuo, Alan; Chovatia, Mansi</span> </li> <li> Communications Biology, Vol. 5, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/s42003-022-03461-2" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/s42003-022-03461-2<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1016/j.fgb.2011.04.001" target="_blank" rel="noopener noreferrer" class="name">Fungal mating pheromones: Choreographing the dating game<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2011-07-01">July 2011</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Jones, Stephen K.; Bennett, Richard J.</span> </li> <li> Fungal Genetics and Biology, Vol. 48, Issue 7</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1016/j.fgb.2011.04.001" class="text-muted" target="_blank" rel="noopener noreferrer">10.1016/j.fgb.2011.04.001<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1128/AEM.70.6.3600-3608.2004" target="_blank" rel="noopener noreferrer" class="name">Vertical Transmission of Endobacteria in the Arbuscular Mycorrhizal Fungus Gigaspora margarita through Generation of Vegetative Spores<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2004-06-01">June 2004</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Bianciotto, V.; Genre, A.; Jargeat, P.</span> </li> <li> Applied and Environmental Microbiology, Vol. 70, Issue 6</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1128/AEM.70.6.3600-3608.2004" class="text-muted" target="_blank" rel="noopener noreferrer">10.1128/AEM.70.6.3600-3608.2004<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/nar/gks456" target="_blank" rel="noopener noreferrer" class="name">InterPro in 2011: new developments in the family and domain prediction database<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2012-05-01">May 2012</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Hunter, S.; Jones, P.; Mitchell, A.</span> </li> <li> Nucleic Acids Research, Vol. 40, Issue 10</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/nar/gks456" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/nar/gks456<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1016/j.tree.2007.08.007" target="_blank" rel="noopener noreferrer" class="name">The evolution of obligate mutualism: if you can’t beat ’em, join ’em<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2007-10-01">October 2007</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Aanen, Duur K.; Hoekstra, Rolf F.</span> </li> <li> Trends in Ecology & Evolution, Vol. 22, Issue 10</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1016/j.tree.2007.08.007" class="text-muted" target="_blank" rel="noopener noreferrer">10.1016/j.tree.2007.08.007<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1111/j.1558-5646.2012.01611.x" target="_blank" rel="noopener noreferrer" class="name">Evolutionary Stability in a 400-Million-Year-Old Heritable Facultative Mutualism: Evolution in Glomeromycota-Glomeribacter Symbiosis<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2012-03-27">March 2012</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Mondo, Stephen J.; Toomer, Kevin H.; Morton, Joseph B.</span> </li> <li> Evolution, Vol. 66, Issue 8</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1111/j.1558-5646.2012.01611.x" class="text-muted" target="_blank" rel="noopener noreferrer">10.1111/j.1558-5646.2012.01611.x<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/nature05248" target="_blank" rel="noopener noreferrer" class="name">Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2006-11-01">November 2006</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Kämper, Jörg; Kahmann, Regine; Bölker, Michael</span> </li> <li> Nature, Vol. 444, Issue 7115</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/nature05248" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/nature05248<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1006/tpbi.1993.1020" target="_blank" rel="noopener noreferrer" class="name">Vertical Transmission and Evolution of Mutualism from Parasitism<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1993-08-01">August 1993</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Yamamura, N.</span> </li> <li> Theoretical Population Biology, Vol. 44, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1006/tpbi.1993.1020" class="text-muted" target="_blank" rel="noopener noreferrer">10.1006/tpbi.1993.1020<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1002/ange.201204540" target="_blank" rel="noopener noreferrer" class="name">Symbiotic Cooperation in the Biosynthesis of a Phytotoxin<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2012-08-22">August 2012</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Scherlach, Kirstin; Busch, Benjamin; Lackner, Gerald</span> </li> <li> Angewandte Chemie, Vol. 124, Issue 38</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1002/ange.201204540" class="text-muted" target="_blank" rel="noopener noreferrer">10.1002/ange.201204540<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1073/pnas.0607845104" target="_blank" rel="noopener noreferrer" class="name">Parasitic inhibition of cell death facilitates symbiosis<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2006-12-26">December 2006</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Pannebakker, B. A.; Loppin, B.; Elemans, C. P. H.</span> </li> <li> Proceedings of the National Academy of Sciences, Vol. 104, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1073/pnas.0607845104" class="text-muted" target="_blank" rel="noopener noreferrer">10.1073/pnas.0607845104<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1073/pnas.1615148113" target="_blank" rel="noopener noreferrer" class="name">Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2016-12-12">December 2016</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Lastovetsky, Olga A.; Gaspar, Maria L.; Mondo, Stephen J.</span> </li> <li> Proceedings of the National Academy of Sciences, Vol. 113, Issue 52</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1073/pnas.1615148113" class="text-muted" target="_blank" rel="noopener noreferrer">10.1073/pnas.1615148113<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/bioinformatics/btm071" target="_blank" rel="noopener noreferrer" class="name">CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2007-03-01">March 2007</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Parra, G.; Bradnam, K.; Korf, I.</span> </li> <li> Bioinformatics, Vol. 23, Issue 9</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/bioinformatics/btm071" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/bioinformatics/btm071<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1101/gr.081612.108" target="_blank" rel="noopener noreferrer" class="name">Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2008-10-03">October 2008</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Ter-Hovhannisyan, V.; Lomsadze, A.; Chernoff, Y. O.</span> </li> <li> Genome Research, Vol. 18, Issue 12</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1101/gr.081612.108" class="text-muted" target="_blank" rel="noopener noreferrer">10.1101/gr.081612.108<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/s41467-021-23002-5" target="_blank" rel="noopener noreferrer" class="name">A sand fly salivary protein acts as a neutrophil chemoattractant<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2021-05-28">May 2021</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Guimaraes-Costa, Anderson B.; Shannon, John P.; Waclawiak, Ingrid</span> </li> <li> Nature Communications, Vol. 12, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/s41467-021-23002-5" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/s41467-021-23002-5<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.2307/20021962" target="_blank" rel="noopener noreferrer" class="name">Sexual Reproduction in the Mucorineae<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1904-01-01">January 1904</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Blakeslee, Albert Francis</span> </li> <li> Proceedings of the American Academy of Arts and Sciences, Vol. 40, Issue 4</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.2307/20021962" class="text-muted" target="_blank" rel="noopener noreferrer">10.2307/20021962<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1007/BF01928363" target="_blank" rel="noopener noreferrer" class="name">Die zygotropische Reaktion der Mucorineen: III. Mitteilung<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1962-07-01">July 1962</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Plempel, M.</span> </li> <li> Planta, Vol. 58, Issue 5</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1007/BF01928363" class="text-muted" target="_blank" rel="noopener noreferrer">10.1007/BF01928363<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/nrg2480" target="_blank" rel="noopener noreferrer" class="name">The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2008-12-01">December 2008</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Nei, Masatoshi; Niimura, Yoshihito; Nozawa, Masafumi</span> </li> <li> Nature Reviews Genetics, Vol. 9, Issue 12</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/nrg2480" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/nrg2480<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1371/journal.pgen.1003233" target="_blank" rel="noopener noreferrer" class="name">Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2013-01-24">January 2013</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Condon, Bradford J.; Leng, Yueqiang; Wu, Dongliang</span> </li> <li> PLoS Genetics, Vol. 9, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1371/journal.pgen.1003233" class="text-muted" target="_blank" rel="noopener noreferrer">10.1371/journal.pgen.1003233<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1186/1471-2105-5-113" target="_blank" rel="noopener noreferrer" class="name">MUSCLE: a multiple sequence alignment method with reduced time and space complexity<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2004-08-19">August 2004</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Edgar, Robert C.</span> </li> <li> BMC Bioinformatics, Vol. 5, Issue 1, p. 113</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1186/1471-2105-5-113" class="text-muted" target="_blank" rel="noopener noreferrer">10.1186/1471-2105-5-113<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/sysbio/sys029" target="_blank" rel="noopener noreferrer" class="name">MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2012-02-22">February 2012</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Ronquist, Fredrik; Teslenko, Maxim; van der Mark, Paul</span> </li> <li> Systematic Biology, Vol. 61, Issue 3</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/sysbio/sys029" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/sysbio/sys029<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/nar/25.5.955" target="_blank" rel="noopener noreferrer" class="name">tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1997-03-01">March 1997</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Lowe, Todd M.; Eddy, Sean R.</span> </li> <li> Nucleic Acids Research, Vol. 25, Issue 5</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/nar/25.5.955" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/nar/25.5.955<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/nature03997" target="_blank" rel="noopener noreferrer" class="name">Pathogenic fungus harbours endosymbiotic bacteria for toxin production<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2005-10-01">October 2005</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Partida-Martinez, Laila P.; Hertweck, Christian</span> </li> <li> Nature, Vol. 437, Issue 7060</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/nature03997" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/nature03997<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1016/j.cub.2016.04.038" target="_blank" rel="noopener noreferrer" class="name">Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2016-06-01">June 2016</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Corrochano, Luis M.; Kuo, Alan; Marcet-Houben, Marina</span> </li> <li> Current Biology, Vol. 26, Issue 12</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1016/j.cub.2016.04.038" class="text-muted" target="_blank" rel="noopener noreferrer">10.1016/j.cub.2016.04.038<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1007/s004380050435" target="_blank" rel="noopener noreferrer" class="name">A ras homologue of Neurospora crassa regulates morphology<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1997-04-28">April 1997</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Yamashiro, A. Kana-uchi, C. T.</span> </li> <li> Molecular and General Genetics MGG, Vol. 254, Issue 4</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1007/s004380050435" class="text-muted" target="_blank" rel="noopener noreferrer">10.1007/s004380050435<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1073/pnas.0701291104" target="_blank" rel="noopener noreferrer" class="name">Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2007-07-25">July 2007</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Wei, W.; McCusker, J. H.; Hyman, R. W.</span> </li> <li> Proceedings of the National Academy of Sciences, Vol. 104, Issue 31</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1073/pnas.0701291104" class="text-muted" target="_blank" rel="noopener noreferrer">10.1073/pnas.0701291104<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/nature724" target="_blank" rel="noopener noreferrer" class="name">The genome sequence of Schizosaccharomyces pombe<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2002-02-01">February 2002</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Wood, V.; Gwilliam, R.; Rajandream, M. -A.</span> </li> <li> Nature, Vol. 415, Issue 6874</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/nature724" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/nature724<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/nar/gks456" target="_blank" rel="noopener noreferrer" class="name">InterPro in 2011: new developments in the family and domain prediction database<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2012-05-01">May 2012</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Hunter, S.; Jones, P.; Mitchell, A.</span> </li> <li> Nucleic Acids Research, Vol. 40, Issue 10</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/nar/gks456" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/nar/gks456<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/molbev/msp077" target="_blank" rel="noopener noreferrer" class="name">FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2009-04-17">April 2009</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Price, M. N.; Dehal, P. S.; Arkin, A. P.</span> </li> <li> Molecular Biology and Evolution, Vol. 26, Issue 7</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/molbev/msp077" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/molbev/msp077<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/nar/gkv1178" target="_blank" rel="noopener noreferrer" class="name">GPCRdb: an information system for G protein-coupled receptors<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2015-11-17">November 2015</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Isberg, Vignir; Mordalski, Stefan; Munk, Christian</span> </li> <li> Nucleic Acids Research, Vol. 44, Issue D1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/nar/gkv1178" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/nar/gkv1178<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1046/j.1365-2958.2000.01954.x" target="_blank" rel="noopener noreferrer" class="name">c-Jun and RACK1 homologues regulate a control point for sexual development in Aspergillus nidulans<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2000-07-01">July 2000</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Hoffmann, Bernd; Wanke, Christoph; LaPaglia, S. Kirsten</span> </li> <li> Molecular Microbiology, Vol. 37, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1046/j.1365-2958.2000.01954.x" class="text-muted" target="_blank" rel="noopener noreferrer">10.1046/j.1365-2958.2000.01954.x<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1111/j.1574-6976.2001.tb00582.x" target="_blank" rel="noopener noreferrer" class="name">Conserved cAMP signaling cascades regulate fungal development and virulence<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2001-05-01">May 2001</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> D'Souza, Cletus A.; Heitman, Joseph</span> </li> <li> FEMS Microbiology Reviews, Vol. 25, Issue 3</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1111/j.1574-6976.2001.tb00582.x" class="text-muted" target="_blank" rel="noopener noreferrer">10.1111/j.1574-6976.2001.tb00582.x<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/nar/gkt1183" target="_blank" rel="noopener noreferrer" class="name">MycoCosm portal: gearing up for 1000 fungal genomes<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2013-12-01">December 2013</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Grigoriev, Igor V.; Nikitin, Roman; Haridas, Sajeet</span> </li> <li> Nucleic Acids Research, Vol. 42, Issue D1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/nar/gkt1183" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/nar/gkt1183<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1073/pnas.0510813103" target="_blank" rel="noopener noreferrer" class="name">Retinoic acid regulates sex-specific timing of meiotic initiation in mice<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2006-02-06">February 2006</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Koubova, J.; Menke, D. B.; Zhou, Q.</span> </li> <li> Proceedings of the National Academy of Sciences, Vol. 103, Issue 8</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1073/pnas.0510813103" class="text-muted" target="_blank" rel="noopener noreferrer">10.1073/pnas.0510813103<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1016/j.cub.2007.03.039" target="_blank" rel="noopener noreferrer" class="name">Endosymbiont-Dependent Host Reproduction Maintains Bacterial-Fungal Mutualism<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2007-05-01">May 2007</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Partida-Martinez, Laila P.; Monajembashi, Shamci; Greulich, Karl-Otto</span> </li> <li> Current Biology, Vol. 17, Issue 9</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1016/j.cub.2007.03.039" class="text-muted" target="_blank" rel="noopener noreferrer">10.1016/j.cub.2007.03.039<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1159/000084979" target="_blank" rel="noopener noreferrer" class="name">Repbase Update, a database of eukaryotic repetitive elements<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2005-01-01">January 2005</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Jurka, J.; Kapitonov, V. V.; Pavlicek, A.</span> </li> <li> Cytogenetic and Genome Research, Vol. 110, Issue 1-4</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1159/000084979" class="text-muted" target="_blank" rel="noopener noreferrer">10.1159/000084979<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1073/pnas.1003391107" target="_blank" rel="noopener noreferrer" class="name">Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2010-06-14">June 2010</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Stajich, J. E.; Wilke, S. K.; Ahren, D.</span> </li> <li> Proceedings of the National Academy of Sciences, Vol. 107, Issue 26</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1073/pnas.1003391107" class="text-muted" target="_blank" rel="noopener noreferrer">10.1073/pnas.1003391107<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/nar/gki442" target="_blank" rel="noopener noreferrer" class="name">InterProScan: protein domains identifier<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2005-07-01">July 2005</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Quevillon, E.; Silventoinen, V.; Pillai, S.</span> </li> <li> Nucleic Acids Research, Vol. 33, Issue Web Server</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/nar/gki442" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/nar/gki442<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1111/j.1469-8137.2011.03948.x" target="_blank" rel="noopener noreferrer" class="name">The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2011-11-16">November 2011</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Tisserant, E.; Kohler, A.; Dozolme-Seddas, P.</span> </li> <li> New Phytologist, Vol. 193, Issue 3</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1111/j.1469-8137.2011.03948.x" class="text-muted" target="_blank" rel="noopener noreferrer">10.1111/j.1469-8137.2011.03948.x<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1126/science.1103773" target="_blank" rel="noopener noreferrer" class="name">The Genome of the Basidiomycetous Yeast and Human Pathogen Cryptococcus neoformans<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2005-02-25">February 2005</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Loftus, B. J.</span> </li> <li> Science, Vol. 307, Issue 5713</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1126/science.1103773" class="text-muted" target="_blank" rel="noopener noreferrer">10.1126/science.1103773<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1101/gr.10.4.516" target="_blank" rel="noopener noreferrer" class="name">Ab initio Gene Finding in <i>Drosophila</i> Genomic DNA<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2000-04-01">April 2000</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Salamov, Asaf A.; Solovyev, Victor V.</span> </li> <li> Genome Research, Vol. 10, Issue 4, p. 516-522</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1101/gr.10.4.516" class="text-muted" target="_blank" rel="noopener noreferrer">10.1101/gr.10.4.516<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/nar/gkm882" target="_blank" rel="noopener noreferrer" class="name">KEGG for linking genomes to life and the environment<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2007-12-23">December 2007</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Kanehisa, M.; Araki, M.; Goto, S.</span> </li> <li> Nucleic Acids Research, Vol. 36, Issue Database</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/nar/gkm882" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/nar/gkm882<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1371/journal.pgen.1000549" target="_blank" rel="noopener noreferrer" class="name">Genomic Analysis of the Basal Lineage Fungus Rhizopus oryzae Reveals a Whole-Genome Duplication<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2009-07-03">July 2009</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Ma, Li-Jun; Ibrahim, Ashraf S.; Skory, Christopher</span> </li> <li> PLoS Genetics, Vol. 5, Issue 7</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1371/journal.pgen.1000549" class="text-muted" target="_blank" rel="noopener noreferrer">10.1371/journal.pgen.1000549<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/s41598-020-61738-0" target="_blank" rel="noopener noreferrer" class="name">Transcriptomic analysis of female and male gonads in juvenile snakeskin gourami (Trichopodus pectoralis)<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2020-03-23">March 2020</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Boonanuntanasarn, Surintorn; Jangprai, Araya; Na-Nakorn, Uthairat</span> </li> <li> Scientific Reports, Vol. 10, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/s41598-020-61738-0" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/s41598-020-61738-0<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1007/s004380050435" target="_blank" rel="noopener noreferrer" class="name">A ras homologue of Neurospora crassa regulates morphology<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1997-04-28">April 1997</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Yamashiro, A. Kana-uchi, C. T.</span> </li> <li> Molecular and General Genetics MGG, Vol. 254, Issue 4</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1007/s004380050435" class="text-muted" target="_blank" rel="noopener noreferrer">10.1007/s004380050435<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1016/j.cub.2007.03.039" target="_blank" rel="noopener noreferrer" class="name">Endosymbiont-Dependent Host Reproduction Maintains Bacterial-Fungal Mutualism<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2007-05-01">May 2007</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Partida-Martinez, Laila P.; Monajembashi, Shamci; Greulich, Karl-Otto</span> </li> <li> Current Biology, Vol. 17, Issue 9</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1016/j.cub.2007.03.039" class="text-muted" target="_blank" rel="noopener noreferrer">10.1016/j.cub.2007.03.039<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1083/jcb.137.1.5" target="_blank" rel="noopener noreferrer" class="name">Telomeres Cluster De Novo before the Initiation of Synapsis: A Three-dimensional Spatial Analysis of Telomere Positions before and during Meiotic Prophase<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1997-04-07">April 1997</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Bass, Hank W.; Marshall, Wallace F.; Sedat, John W.</span> </li> <li> The Journal of Cell Biology, Vol. 137, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1083/jcb.137.1.5" class="text-muted" target="_blank" rel="noopener noreferrer">10.1083/jcb.137.1.5<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1016/j.cell.2008.09.002" target="_blank" rel="noopener noreferrer" class="name">Retinoic Acid Synthesis and Signaling during Early Organogenesis<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2008-09-01">September 2008</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Duester, Gregg</span> </li> <li> Cell, Vol. 134, Issue 6</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1016/j.cell.2008.09.002" class="text-muted" target="_blank" rel="noopener noreferrer">10.1016/j.cell.2008.09.002<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/nature04341" target="_blank" rel="noopener noreferrer" class="name">Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2005-12-01">December 2005</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Galagan, James E.; Calvo, Sarah E.; Cuomo, Christina</span> </li> <li> Nature, Vol. 438, Issue 7071</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/nature04341" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/nature04341<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/nar/gkr948" target="_blank" rel="noopener noreferrer" class="name">InterPro in 2011: new developments in the family and domain prediction database<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2011-11-16">November 2011</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Hunter, S.; Jones, P.; Mitchell, A.</span> </li> <li> Nucleic Acids Research, Vol. 40, Issue D1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/nar/gkr948" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/nar/gkr948<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/75556" target="_blank" rel="noopener noreferrer" class="name">Gene Ontology: tool for the unification of biology<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2000-05-01">May 2000</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Ashburner, Michael; Ball, Catherine A.; Blake, Judith A.</span> </li> <li> Nature Genetics, Vol. 25, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/75556" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/75556<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1371/journal.pone.0015273" target="_blank" rel="noopener noreferrer" class="name">Structure, Function, and Phylogeny of the Mating Locus in the Rhizopus oryzae Complex<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2010-12-09">December 2010</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Gryganskyi, Andrii P.; Lee, Soo Chan; Litvintseva, Anastasia P.</span> </li> <li> PLoS ONE, Vol. 5, Issue 12</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1371/journal.pone.0015273" class="text-muted" target="_blank" rel="noopener noreferrer">10.1371/journal.pone.0015273<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/215211a0" target="_blank" rel="noopener noreferrer" class="name">Sexual Factor of the Mucorales<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1967-07-01">July 1967</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Van Den Ende, H.</span> </li> <li> Nature, Vol. 215, Issue 5097</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/215211a0" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/215211a0<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1371/journal.pone.0075443" target="_blank" rel="noopener noreferrer" class="name">Targeting Fungal Genes by Diced siRNAs: A Rapid Tool to Decipher Gene Function in Aspergillus nidulans<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2013-10-10">October 2013</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Kalleda, Natarajaswamy; Naorem, Aruna; Manchikatla, Rajam V.</span> </li> <li> PLoS ONE, Vol. 8, Issue 10</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1371/journal.pone.0075443" class="text-muted" target="_blank" rel="noopener noreferrer">10.1371/journal.pone.0075443<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.3186/jjphytopath.46.40" target="_blank" rel="noopener noreferrer" class="name"><title/> [Ｒｈｉｚｏｐｕｓ　ｃｈｉｎｅｎｓｉｓ　Ｓａｉｔｏによるイネ苗立枯病り病根の組織学的観察]<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1980-01-01">January 1980</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Noda, Takahito; Hashiba, Teruyoshi; Sato, Zenji</span> </li> <li> Japanese Journal of Phytopathology, Vol. 46, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.3186/jjphytopath.46.40" class="text-muted" target="_blank" rel="noopener noreferrer">10.3186/jjphytopath.46.40<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1073/pnas.0701291104" target="_blank" rel="noopener noreferrer" class="name">Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2007-07-25">July 2007</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Wei, W.; McCusker, J. H.; Hyman, R. W.</span> </li> <li> Proceedings of the National Academy of Sciences, Vol. 104, Issue 31</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1073/pnas.0701291104" class="text-muted" target="_blank" rel="noopener noreferrer">10.1073/pnas.0701291104<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1101/gr.1224503" target="_blank" rel="noopener noreferrer" class="name">OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2003-09-01">September 2003</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Li, L.</span> </li> <li> Genome Research, Vol. 13, Issue 9</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1101/gr.1224503" class="text-muted" target="_blank" rel="noopener noreferrer">10.1101/gr.1224503<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/s41559-019-0905-3" target="_blank" rel="noopener noreferrer" class="name">Publisher Correction: Medusozoan genomes inform the evolution of the jellyfish body plan<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2019-05-02">May 2019</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Khalturin, Konstantin; Shinzato, Chuya; Khalturina, Maria</span> </li> <li> Nature Ecology & Evolution, Vol. 3, Issue 6</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/s41559-019-0905-3" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/s41559-019-0905-3<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1111/j.1574-6976.2008.00131.x" target="_blank" rel="noopener noreferrer" class="name">Magnificent seven: roles of G protein-coupled receptors in extracellular sensing in fungi<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2008-11-01">November 2008</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Xue, Chaoyang; Hsueh, Yen-Ping; Heitman, Joseph</span> </li> <li> FEMS Microbiology Reviews, Vol. 32, Issue 6</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1111/j.1574-6976.2008.00131.x" class="text-muted" target="_blank" rel="noopener noreferrer">10.1111/j.1574-6976.2008.00131.x<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1186/gb-2013-14-4-r36" target="_blank" rel="noopener noreferrer" class="name">TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2013-01-01">January 2013</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Kim, Daehwan; Pertea, Geo; Trapnell, Cole</span> </li> <li> Genome Biology, Vol. 14, Issue 4</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1186/gb-2013-14-4-r36" class="text-muted" target="_blank" rel="noopener noreferrer">10.1186/gb-2013-14-4-r36<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/nature06453" target="_blank" rel="noopener noreferrer" class="name">Identification of the sex genes in an early diverged fungus<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2008-01-01">January 2008</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Idnurm, Alexander; Walton, Felicia J.; Floyd, Anna</span> </li> <li> Nature, Vol. 451, Issue 7175</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/nature06453" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/nature06453<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1046/j.1365-294x.1998.00410.x" target="_blank" rel="noopener noreferrer" class="name">Characterization of root colonization profiles by a microcosm community of arbuscular mycorrhizal fungi using 25S rDNA‐targeted nested PCR<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1998-07-01">July 1998</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Van Tuinen, D.; Jacquot, E.; Zhao, B.</span> </li> <li> Molecular Ecology, Vol. 7, Issue 7</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1046/j.1365-294x.1998.00410.x" class="text-muted" target="_blank" rel="noopener noreferrer">10.1046/j.1365-294x.1998.00410.x<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1002/ange.201204540" target="_blank" rel="noopener noreferrer" class="name">Symbiotic Cooperation in the Biosynthesis of a Phytotoxin<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2012-08-22">August 2012</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Scherlach, Kirstin; Busch, Benjamin; Lackner, Gerald</span> </li> <li> Angewandte Chemie, Vol. 124, Issue 38</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1002/ange.201204540" class="text-muted" target="_blank" rel="noopener noreferrer">10.1002/ange.201204540<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/protein/10.1.1" target="_blank" rel="noopener noreferrer" class="name">Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1997-01-01">January 1997</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Nielsen, H.; Engelbrecht, J.; Brunak, S.</span> </li> <li> Protein Engineering Design and Selection, Vol. 10, Issue 1, p. 1-6</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/protein/10.1.1" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/protein/10.1.1<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1006/tpbi.1993.1020" target="_blank" rel="noopener noreferrer" class="name">Vertical Transmission and Evolution of Mutualism from Parasitism<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1993-08-01">August 1993</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Yamamura, N.</span> </li> <li> Theoretical Population Biology, Vol. 44, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1006/tpbi.1993.1020" class="text-muted" target="_blank" rel="noopener noreferrer">10.1006/tpbi.1993.1020<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/s41467-019-12901-3" target="_blank" rel="noopener noreferrer" class="name">Persistence of adoptively transferred T cells with a kinetically engineered IL-2 receptor agonist<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2020-01-31">January 2020</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Parisi, Giulia; Saco, Justin D.; Salazar, Felix B.</span> </li> <li> Nature Communications, Vol. 11, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/s41467-019-12901-3" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/s41467-019-12901-3<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/nature06453" target="_blank" rel="noopener noreferrer" class="name">Identification of the sex genes in an early diverged fungus<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2008-01-01">January 2008</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Idnurm, Alexander; Walton, Felicia J.; Floyd, Anna</span> </li> <li> Nature, Vol. 451, Issue 7175</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/nature06453" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/nature06453<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1074/jbc.M403853200" target="_blank" rel="noopener noreferrer" class="name">The Pho80-like Cyclin of <em>Aspergillus nidulans</em> Regulates Development Independently of Its Role in Phosphate Acquisition<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2004-07-06">July 2004</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Wu, Dongliang; Dou, Xiaowei; Hashmi, Shahr B.</span> </li> <li> Journal of Biological Chemistry, Vol. 279, Issue 36</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1074/jbc.M403853200" class="text-muted" target="_blank" rel="noopener noreferrer">10.1074/jbc.M403853200<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/nar/gkt1183" target="_blank" rel="noopener noreferrer" class="name">MycoCosm portal: gearing up for 1000 fungal genomes<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2013-12-01">December 2013</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Grigoriev, Igor V.; Nikitin, Roman; Haridas, Sajeet</span> </li> <li> Nucleic Acids Research, Vol. 42, Issue D1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/nar/gkt1183" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/nar/gkt1183<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1046/j.1365-2958.2000.01954.x" target="_blank" rel="noopener noreferrer" class="name">c-Jun and RACK1 homologues regulate a control point for sexual development in Aspergillus nidulans<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2000-07-01">July 2000</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Hoffmann, Bernd; Wanke, Christoph; LaPaglia, S. Kirsten</span> </li> <li> Molecular Microbiology, Vol. 37, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1046/j.1365-2958.2000.01954.x" class="text-muted" target="_blank" rel="noopener noreferrer">10.1046/j.1365-2958.2000.01954.x<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/bioinformatics/btu638" target="_blank" rel="noopener noreferrer" class="name">HTSeq--a Python framework to work with high-throughput sequencing data<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2014-09-25">September 2014</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Anders, S.; Pyl, P. T.; Huber, W.</span> </li> <li> Bioinformatics, Vol. 31, Issue 2</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/bioinformatics/btu638" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/bioinformatics/btu638<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/npre.2010.4282.2" target="_blank" rel="noopener noreferrer" class="name">Differential expression analysis for sequence count data<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2010-04-30">April 2010</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Anders, Simon; Huber, Wolfgang</span> </li> <li> Nature Precedings</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/npre.2010.4282.2" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/npre.2010.4282.2<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1371/journal.pone.0075443" target="_blank" rel="noopener noreferrer" class="name">Targeting Fungal Genes by Diced siRNAs: A Rapid Tool to Decipher Gene Function in Aspergillus nidulans<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2013-10-10">October 2013</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Kalleda, Natarajaswamy; Naorem, Aruna; Manchikatla, Rajam V.</span> </li> <li> PLoS ONE, Vol. 8, Issue 10</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1371/journal.pone.0075443" class="text-muted" target="_blank" rel="noopener noreferrer">10.1371/journal.pone.0075443<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1111/j.1574-6976.2001.tb00582.x" target="_blank" rel="noopener noreferrer" class="name">Conserved cAMP signaling cascades regulate fungal development and virulence<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2001-05-01">May 2001</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> D'Souza, Cletus A.; Heitman, Joseph</span> </li> <li> FEMS Microbiology Reviews, Vol. 25, Issue 3</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1111/j.1574-6976.2001.tb00582.x" class="text-muted" target="_blank" rel="noopener noreferrer">10.1111/j.1574-6976.2001.tb00582.x<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1073/pnas.0607845104" target="_blank" rel="noopener noreferrer" class="name">Parasitic inhibition of cell death facilitates symbiosis<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2006-12-26">December 2006</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Pannebakker, B. A.; Loppin, B.; Elemans, C. P. H.</span> </li> <li> Proceedings of the National Academy of Sciences, Vol. 104, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1073/pnas.0607845104" class="text-muted" target="_blank" rel="noopener noreferrer">10.1073/pnas.0607845104<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/bioinformatics/btm071" target="_blank" rel="noopener noreferrer" class="name">CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2007-03-01">March 2007</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Parra, G.; Bradnam, K.; Korf, I.</span> </li> <li> Bioinformatics, Vol. 23, Issue 9</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/bioinformatics/btm071" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/bioinformatics/btm071<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/nature01554" target="_blank" rel="noopener noreferrer" class="name">The genome sequence of the filamentous fungus Neurospora crassa<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2003-04-01">April 2003</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Galagan, James E.; Calvo, Sarah E.; Borkovich, Katherine A.</span> </li> <li> Nature, Vol. 422, Issue 6934</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/nature01554" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/nature01554<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/bioinformatics/bti1018" target="_blank" rel="noopener noreferrer" class="name">De novo identification of repeat families in large genomes<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2005-06-01">June 2005</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Price, A. L.; Jones, N. C.; Pevzner, P. A.</span> </li> <li> Bioinformatics, Vol. 21, Issue Suppl 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/bioinformatics/bti1018" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/bioinformatics/bti1018<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/sysbio/sys029" target="_blank" rel="noopener noreferrer" class="name">MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2012-02-22">February 2012</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Ronquist, Fredrik; Teslenko, Maxim; van der Mark, Paul</span> </li> <li> Systematic Biology, Vol. 61, Issue 3</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/sysbio/sys029" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/sysbio/sys029<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/s41586-021-04075-0" target="_blank" rel="noopener noreferrer" class="name">Dietary palmitic acid promotes a prometastatic memory via Schwann cells<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2021-11-10">November 2021</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Pascual, Gloria; Domínguez, Diana; Elosúa-Bayes, Marc</span> </li> <li> Nature, Vol. 599, Issue 7885</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/s41586-021-04075-0" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/s41586-021-04075-0<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1111/j.1558-5646.2012.01611.x" target="_blank" rel="noopener noreferrer" class="name">Evolutionary Stability in a 400-Million-Year-Old Heritable Facultative Mutualism: Evolution in Glomeromycota-Glomeribacter Symbiosis<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2012-03-27">March 2012</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Mondo, Stephen J.; Toomer, Kevin H.; Morton, Joseph B.</span> </li> <li> Evolution, Vol. 66, Issue 8</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1111/j.1558-5646.2012.01611.x" class="text-muted" target="_blank" rel="noopener noreferrer">10.1111/j.1558-5646.2012.01611.x<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1128/EC.1.6.954-966.2002" target="_blank" rel="noopener noreferrer" class="name"><em>ras2</em> Controls Morphogenesis, Pheromone Response, and Pathogenicity in the Fungal Pathogen <em>Ustilago maydis</em><span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2002-12-01">December 2002</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Lee, Nancy; Kronstad, James W.</span> </li> <li> Eukaryotic Cell, Vol. 1, Issue 6</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1128/EC.1.6.954-966.2002" class="text-muted" target="_blank" rel="noopener noreferrer">10.1128/EC.1.6.954-966.2002<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/nature03997" target="_blank" rel="noopener noreferrer" class="name">Pathogenic fungus harbours endosymbiotic bacteria for toxin production<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2005-10-01">October 2005</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Partida-Martinez, Laila P.; Hertweck, Christian</span> </li> <li> Nature, Vol. 437, Issue 7060</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/nature03997" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/nature03997<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.2307/20021962" target="_blank" rel="noopener noreferrer" class="name">Sexual Reproduction in the Mucorineae<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1904-01-01">January 1904</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Blakeslee, Albert Francis</span> </li> <li> Proceedings of the American Academy of Arts and Sciences, Vol. 40, Issue 4</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.2307/20021962" class="text-muted" target="_blank" rel="noopener noreferrer">10.2307/20021962<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1016/j.cub.2016.04.038" target="_blank" rel="noopener noreferrer" class="name">Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2016-06-01">June 2016</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Corrochano, Luis M.; Kuo, Alan; Marcet-Houben, Marina</span> </li> <li> Current Biology, Vol. 26, Issue 12</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1016/j.cub.2016.04.038" class="text-muted" target="_blank" rel="noopener noreferrer">10.1016/j.cub.2016.04.038<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1101/gr.081612.108" target="_blank" rel="noopener noreferrer" class="name">Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2008-10-03">October 2008</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Ter-Hovhannisyan, V.; Lomsadze, A.; Chernoff, Y. O.</span> </li> <li> Genome Research, Vol. 18, Issue 12</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1101/gr.081612.108" class="text-muted" target="_blank" rel="noopener noreferrer">10.1101/gr.081612.108<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1016/S0022-2836(03)00182-7" target="_blank" rel="noopener noreferrer" class="name">Reliability Measures for Membrane Protein Topology Prediction Algorithms<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2003-03-01">March 2003</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Melén, Karin; Krogh, Anders; von Heijne, Gunnar</span> </li> <li> Journal of Molecular Biology, Vol. 327, Issue 3</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1016/S0022-2836(03)00182-7" class="text-muted" target="_blank" rel="noopener noreferrer">10.1016/S0022-2836(03)00182-7<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/215211a0" target="_blank" rel="noopener noreferrer" class="name">Sexual Factor of the Mucorales<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1967-07-01">July 1967</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Van Den Ende, H.</span> </li> <li> Nature, Vol. 215, Issue 5097</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/215211a0" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/215211a0<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/nrg2480" target="_blank" rel="noopener noreferrer" class="name">The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2008-12-01">December 2008</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Nei, Masatoshi; Niimura, Yoshihito; Nozawa, Masafumi</span> </li> <li> Nature Reviews Genetics, Vol. 9, Issue 12</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/nrg2480" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/nrg2480<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1128/jb.114.3.1074-1082.1973" target="_blank" rel="noopener noreferrer" class="name">Trisporic Acid Biosynthesis in Separate Plus and Minus Cultures of Blakeslea trispora: Identification by Mucor Assay of Two Mating-Type-Specific Components<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="1973-01-01">January 1973</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Sutter, Richard P.; Capage, Domenick A.; Harrison, Thomas L.</span> </li> <li> Journal of Bacteriology, Vol. 114, Issue 3</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1128/jb.114.3.1074-1082.1973" class="text-muted" target="_blank" rel="noopener noreferrer">10.1128/jb.114.3.1074-1082.1973<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1186/gb-2013-14-4-r36" target="_blank" rel="noopener noreferrer" class="name">TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2013-01-01">January 2013</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Kim, Daehwan; Pertea, Geo; Trapnell, Cole</span> </li> <li> Genome Biology, Vol. 14, Issue 4</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1186/gb-2013-14-4-r36" class="text-muted" target="_blank" rel="noopener noreferrer">10.1186/gb-2013-14-4-r36<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> </div> <div class="pagination-container small"> <a class="pure-button prev page" href="#" rel="prev"><span class="sr-only">Previous Page</span><span class="fa fa-angle-left"></span></a> <ul class="pagination d-inline-block" style="padding-left:.2em;"></ul> <a class="pure-button next page" href="#" rel="next"><span class="sr-only">Next Page</span><span class="fa fa-angle-right"></span></a> </div> </div> </div> <div class="col-sm-3 order-sm-3"> <ul class="nav nav-stacked"> <li class="active"><a href="" class="reference-type-filter tab-nav" data-tab="biblio-references" data-filter="type" data-pattern=""><span class="fa fa-angle-right"></span> All References</a></li> <li class="small" style="margin-left:.75em; text-transform:capitalize;"><a href="" class="reference-type-filter tab-nav" data-tab="biblio-references" data-filter="type" data-pattern="journal"><span class="fa fa-angle-right"></span> journal<small class="text-muted"> (113)</small></a></li> <li class="small" style="margin-left:.75em; text-transform:capitalize;"><a href="" class="reference-type-filter tab-nav" data-tab="biblio-references" data-filter="type" data-pattern="text"><span class="fa fa-angle-right"></span> text<small class="text-muted"> (1)</small></a></li> </ul> <div style="margin-top:2em;"> <form class="pure-form small text-muted reference-search"> <label for="reference-search-text" class="sr-only">Search</label> <input class="search form-control pure-input-1" id="reference-search-text" placeholder="Search" style="margin-bottom:10px;" /> <fieldset aria-label="Sort By"> <legend class="legend-filters sr-only">Sort by:</legend> <div style="margin-left:1em; font-weight:normal; line-height: 1.6em;"><input type="radio" class="sort" name="references-sort" data-sort="name" style="position:relative;top:2px;" id="reference-search-sort-name"><label for="reference-search-sort-name" style="margin-left: .3em;">Sort by title</label></div> <div style="margin-left:1em; font-weight:normal; line-height: 1.6em;"><input type="radio" class="sort" name="references-sort" data-sort="date" data-order="desc" style="position:relative;top:2px;" id="reference-search-sort-date"><label for="reference-search-sort-date" style="margin-left: .3em;">Sort by date</label></div> </fieldset> <div class="text-left" style="margin-left:1em;"> <a href="" class="filter-clear clearfix" title="Clear filter / sort" style="font-weight:normal; float:none;">[ × clear filter / sort ]</a> </div> <input type="submit" id="sort_submit_references" name="submit" aria-label="submit" style="display: none;"/> </form> </div> </div> </div> </section> <section id="biblio-citations" class="tab-content tab-content-sec osti-curated" data-tab="biblio"> <div class="row"> <div class="col-sm-9 order-sm-9"> <div class="padding"> <p class="lead text-muted" style="font-size: 18px; margin-top:0px;">Works referencing / citing this record:</p> <div class="list"> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1371/journal.pone.0224051" target="_blank" rel="noopener noreferrer" class="name">Mechanism of interaction of an endofungal bacterium Serratia marcescens D1 with its host and non-host fungi<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2020-04-22">April 2020</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Hazarika, Dibya Jyoti; Gautom, Trishnamoni; Parveen, Assma</span> </li> <li> PLOS ONE, Vol. 15, Issue 4</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1371/journal.pone.0224051" class="text-muted" target="_blank" rel="noopener noreferrer">10.1371/journal.pone.0224051<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1093/femsre/fuy008" target="_blank" rel="noopener noreferrer" class="name">Bacterial–fungal interactions: ecology, mechanisms and challenges<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2018-02-19">February 2018</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Deveau, Aurélie; Bonito, Gregory; Uehling, Jessie</span> </li> <li> FEMS Microbiology Reviews, Vol. 42, Issue 3</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1093/femsre/fuy008" class="text-muted" target="_blank" rel="noopener noreferrer">10.1093/femsre/fuy008<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/s41396-018-0053-9" target="_blank" rel="noopener noreferrer" class="name">Mycoplasma-related endobacteria within Mortierellomycotina fungi: diversity, distribution and functional insights into their lifestyle<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2018-02-23">February 2018</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Desirò, Alessandro; Hao, Zhen; Liber, Julian A.</span> </li> <li> The ISME Journal, Vol. 12, Issue 7</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/s41396-018-0053-9" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/s41396-018-0053-9<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1038/s41396-020-0587-5" target="_blank" rel="noopener noreferrer" class="name">Mycelial network-mediated rhizobial dispersal enhances legume nodulation<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2020-01-23">January 2020</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Zhang, Wei; Li, Xiao-Gang; Sun, Kai</span> </li> <li> The ISME Journal, Vol. 14, Issue 4</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1038/s41396-020-0587-5" class="text-muted" target="_blank" rel="noopener noreferrer">10.1038/s41396-020-0587-5<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> <div> <h2 class="title" style="margin-bottom:0;" data-apporder=""> <a href="https://doi.org/10.1111/1462-2920.14827" target="_blank" rel="noopener noreferrer" class="name">At the nexus of three kingdoms: the genome of the mycorrhizal fungus <em>Gigaspora margarita</em> provides insights into plant, endobacterial and fungal interactions<span class="fa fa-external-link" aria-hidden="true"></span></a> <small class="text-muted" style="text-transform:uppercase; font-size:0.75rem;"><br/> <span class="type">journal</span>, <span class="date" data-date="2019-10-31">October 2019</span></small> </h2> <ul class="small references-list" style="list-style-type:none; margin-top: 0.5em; padding-left: 0; line-height:1.8em;"> <li> <span style="color:#5C7B2D;"> Venice, Francesco; Ghignone, Stefano; Salvioli di Fossalunga, Alessandra</span> </li> <li> Environmental Microbiology, Vol. 22, Issue 1</li> <li> <span class="text-muted related-url">DOI: <a href="https://doi.org/10.1111/1462-2920.14827" class="text-muted" target="_blank" rel="noopener noreferrer">10.1111/1462-2920.14827<span class="fa fa-external-link" aria-hidden="true"></span></a></span> </li> </ul> <hr/> </div> </div> <div class="pagination-container small"> <a class="pure-button prev page" href="#" rel="prev"><span class="sr-only">Previous Page</span><span class="fa fa-angle-left"></span></a> <ul class="pagination d-inline-block" style="padding-left:.2em;"></ul> <a class="pure-button next page" href="#" rel="next"><span class="sr-only">Next Page</span><span class="fa fa-angle-right"></span></a> </div> </div> </div> <div class="col-sm-3 order-sm-3"> <ul class="nav nav-stacked"> <li class="active"><a href="" class="reference-type-filter tab-nav" data-filter="type" data-pattern=""><span class="fa fa-angle-right"></span> All Cited By</a></li> <li class="small" style="margin-left:.75em; text-transform:capitalize;"><a href="" class="reference-type-filter tab-nav" data-filter="type" data-pattern="journal"><span class="fa fa-angle-right"></span> journal<small class="text-muted"> (5)</small></a></li> </ul> <div style="margin-top:2em;"> <form class="pure-form small text-muted citation-search"> <label for="citation-search-text" class="sr-only">Search</label> <input class="search form-control pure-input-1" id="citation-search-text" placeholder="Search" style="margin-bottom:10px;" /> <fieldset aria-label="Sort By"> <legend class="legend-filters sr-only">Sort by:</legend> <div style="margin-left:1em; font-weight:normal; line-height: 1.6em;"><input type="radio" class="sort" name="references-sort" data-sort="name" style="position:relative;top:2px;" id="citation-search-sort-name"><label for="citation-search-sort-name" style="margin-left: .3em;">Sort by title</label></div> <div style="margin-left:1em; font-weight:normal; line-height: 1.6em;"><input type="radio" class="sort" name="references-sort" data-sort="date" data-order="desc" style="position:relative;top:2px;" id="citation-search-sort-date"><label for="citation-search-sort-date" style="margin-left: .3em;">Sort by date</label></div> </fieldset> <div class="text-left" style="margin-left:1em;"> <a href="" class="filter-clear clearfix" title="Clear filter / sort" style="font-weight:normal; float:none;">[ × clear filter / sort ]</a> </div> <input type="submit" id="sort_submit_citations" name="submit" aria-label="submit" style="display: none;"/> </form> </div> </div> </div> </section> <section id="biblio-related" class="tab-content tab-content-sec " data-tab="biblio"> <div class="row"> <div class="col-sm-9 order-sm-9"> <section id="biblio-similar" class="tab-content tab-content-sec active" data-tab="related"> <div class="padding"> <p class="lead text-muted" style="font-size: 18px; margin-top:0px;">Similar Records in DOE PAGES and OSTI.GOV collections:</p> <aside> <ul class="item-list" itemscope itemtype="http://schema.org/ItemList" style="padding-left:0; list-style-type: none;"> <li> <div class="article item document" itemprop="itemListElement" itemscope itemtype="http://schema.org/WebPage"><meta itemprop="position" content="1" /><div class="item-info"> <h2 class="title" itemprop="name headline"><a href="/pages/biblio/1658427-molecular-dialogues-between-early-divergent-fungi-bacteria-antagonism-versus-mutualism" itemprop="url">Molecular Dialogues between Early Divergent Fungi and Bacteria in an Antagonism versus a Mutualism</a></h2> <div class="metadata"> <small class="text-muted" style="text-transform:uppercase;display:block;line-height:2.5em;">Journal Article</small><span class="authors"> <span class="author">Lastovetsky, Olga A.</span> ; <span class="author">Krasnovsky, Lev D.</span> ; <span class="author">Qin, Xiaotian</span> ; <span class="author">...</span> <span class="text-muted pubdata"> - mBio</span> </span> </div> <div class="abstract">Fungal-bacterial symbioses range from antagonisms to mutualisms and remain one of the least understood interdomain interactions despite their ubiquity as well as ecological and medical importance. To build a predictive conceptual framework for understanding interactions between fungi and bacteria in different types of symbioses, we surveyed fungal and bacterial transcriptional responses in the mutualism between Rhizopus microsporus (Rm) (ATCC 52813, host) and its Mycetohabitans (formerly Burkholderia) endobacteria versus the antagonism between a nonhost Rm (ATCC 11559) and Mycetohabitans isolated from the host, at two time points, before and after partner physical contact. We found that bacteria and fungi sensed each<a href='#' onclick='$(this).hide().next().show().next().show();return false;' style='margin-left:10px;'>more »</a><span style='display:none;'> other before contact and altered gene expression patterns accordingly. Mycetohabitans did not discriminate between the host and nonhost and engaged a common set of genes encoding known as well as novel symbiosis factors. In contrast, responses of the host versus nonhost to endobacteria were dramatically different, converging on the altered expression of genes involved in cell wall biosynthesis and reactive oxygen species (ROS) metabolism. On the basis of the observed patterns, we formulated a set of hypotheses describing fungal-bacterial interactions and tested some of them. By conducting ROS measurements, we confirmed that nonhost fungi increased production of ROS in response to endobacteria, whereas host fungi quenched their ROS output, suggesting that ROS metabolism contributes to the nonhost resistance to bacterial infection and the host ability to form a mutualism. Overall, our study offers a testable framework of predictions describing interactions of early divergent Mucoromycotina fungi with bacteria.</span><a href='#' onclick='$(this).hide().prev().hide().prev().show();return false;' style='margin-left:10px;display:none;'>« less</a></div><div class="metadata-links small clearfix text-muted" style="margin-top:15px;"> <div class="pure-menu pure-menu-horizontal pull-right" style="width:unset;"> <ul class="pure-menu-list"> <li class="pure-menu-item"><span class="item-info-ftlink"><a class="misc doi-link " href="https://doi.org/10.1128/mBio.02088-20" target="_blank" rel="noopener" title="Link to document DOI" data-ostiid="1658427" data-product-type="Journal Article" data-product-subtype="PA" >https://doi.org/10.1128/mBio.02088-20</a></span></li> </ul> </div> </div> </div> <div class="clearfix"></div> </div> </li> <li> <div class="article item document" itemprop="itemListElement" itemscope itemtype="http://schema.org/WebPage"><meta itemprop="position" content="3" /><div class="item-info"> <h2 class="title" itemprop="name headline"><a href="/pages/biblio/1335527-lipid-metabolic-changes-early-divergent-fungus-govern-establishment-mutualistic-symbiosis-endobacteria" itemprop="url">Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria</a></h2> <div class="metadata"> <small class="text-muted" style="text-transform:uppercase;display:block;line-height:2.5em;">Journal Article</small><span class="authors"> <span class="author">Lastovetsky, Olga A.</span> ; <span class="author">Gaspar, Maria L.</span> ; <span class="author">Mondo, Stephen J.</span> ; <span class="author">...</span> <span class="text-muted pubdata"> - Proceedings of the National Academy of Sciences of the United States of America</span> </span> </div> <div class="abstract">Significance Mutually beneficial interactions of fungi with bacteria are increasingly recognized as ubiquitous and economically important. However, little is known about their establishment and maintenance. Utilizing the association between the fungus Rhizopus microsporus and its endosymbiont Burkholderia as a model, we provide first insights into fungal molecular mechanisms governing symbiosis establishment with bacteria. We show that specific changes in fungal lipid metabolism, mediated by diacylgycerol kinase enzymes, are required to maintain a mutualistic outcome of interaction with bacteria, a pattern consistent with the addiction model of mutualism evolution. We also offer insights into genetics and biochemistry of lipid metabolism in<a href='#' onclick='$(this).hide().next().show().next().show();return false;' style='margin-left:10px;'>more »</a><span style='display:none;'> an understudied group of oleaginous fungi, which are a promising source of oils for biodiesel production.</span><a href='#' onclick='$(this).hide().prev().hide().prev().show();return false;' style='margin-left:10px;display:none;'>« less</a></div><div class="metadata-links small clearfix text-muted" style="margin-top:15px;"> <span class="fa fa-book text-muted" aria-hidden="true"></span> Cited by 49<div class="pure-menu pure-menu-horizontal pull-right" style="width:unset;"> <ul class="pure-menu-list"> <li class="pure-menu-item"><span class="item-info-ftlink"><a class="misc doi-link " href="https://doi.org/10.1073/pnas.1615148113" target="_blank" rel="noopener" title="Link to document DOI" data-ostiid="1335527" data-product-type="Journal Article" data-product-subtype="PA" >https://doi.org/10.1073/pnas.1615148113</a></span></li> </ul> </div> </div> </div> <div class="clearfix"></div> </div> </li> <li> <div class="article item document" itemprop="itemListElement" itemscope itemtype="http://schema.org/WebPage"><meta itemprop="position" content="4" /><div class="item-info"> <h2 class="title" itemprop="name headline"><a href="/pages/biblio/1544040-whole-genome-analyses-suggests-burkholderia-sensu-lato-contains-two-additional-novel-genera-mycetohabitans-gen-nov-trinickia-gen-nov-implications-evolution-diazotrophy-nodulation-burkholderiaceae" itemprop="url">Whole Genome Analyses Suggests that <em>Burkholderia</em> sensu lato Contains Two Additional Novel Genera (<em>Mycetohabitans</em> gen. nov., and <em>Trinickia</em> gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the <em>Burkholderiaceae</em></a></h2> <div class="metadata"> <small class="text-muted" style="text-transform:uppercase;display:block;line-height:2.5em;">Journal Article</small><span class="authors"> <span class="author">Estrada-de los Santos, Paulina</span> ; <span class="author">Palmer, Marike</span> ; <span class="author">Chávez-Ramírez, Belén</span> ; <span class="author">...</span> <span class="text-muted pubdata"> - Genes</span> </span> </div> <div class="abstract"><em>Burkholderia</em> sensu lato is a large and complex group, containing pathogenic, phytopathogenic, symbiotic and non-symbiotic strains from a very wide range of environmental (soil, water, plants, fungi) and clinical (animal, human) habitats. Its taxonomy has been evaluated several times through the analysis of 16S rRNA sequences, concantenated 4–7 housekeeping gene sequences, and lately by genome sequences. Currently, the division of this group into <em>Burkholderia</em>, <em>Caballeronia</em>, <em>Paraburkholderia</em>, and <em>Robbsia</em> is strongly supported by genome analysis. These new genera broadly correspond to the various habitats/lifestyles of <em>Burkholderia</em> s.l., e.g., all the plant beneficial and environmental (PBE) strains are included in <em>Paraburkholderia</em> (which<a href='#' onclick='$(this).hide().next().show().next().show();return false;' style='margin-left:10px;'>more »</a><span style='display:none;'> also includes all the N<sub>2</sub>-fixing legume symbionts) and <em>Caballeronia</em>, while most of the human and animal pathogens are retained in <em>Burkholderia</em> sensu stricto. However, none of these genera can accommodate two important groups of species. One of these includes the closely related <em>Paraburkholderia rhizoxinica</em> and <em>Paraburkholderia endofungorum</em>, which are both symbionts of the fungal phytopathogen <em>Rhizopus microsporus</em>.</span><a href='#' onclick='$(this).hide().prev().hide().prev().show();return false;' style='margin-left:10px;display:none;'>« less</a></div><div class="metadata-links small clearfix text-muted" style="margin-top:15px;"> <span class="fa fa-book text-muted" aria-hidden="true"></span> Cited by 131<div class="pure-menu pure-menu-horizontal pull-right" style="width:unset;"> <ul class="pure-menu-list"> <li class="pure-menu-item"><span class="item-info-ftlink"><a class="misc doi-link " href="https://doi.org/10.3390/genes9080389" target="_blank" rel="noopener" title="Link to document DOI" data-ostiid="1544040" data-product-type="Journal Article" data-product-subtype="AM" >https://doi.org/10.3390/genes9080389</a></span></li> <li class="pure-menu-item"><span class="item-info-ftlink"><a class="misc fulltext-link " href="/pages/servlets/purl/1544040" title="Link to document media" target="_blank" rel="noopener" data-ostiid="1544040" data-product-type="Journal Article" data-product-subtype="AM" >Full Text Available</a></span></li> </ul> </div> </div> </div> <div class="clearfix"></div> </div> </li> <li> <div class="article item document" itemprop="itemListElement" itemscope itemtype="http://schema.org/WebPage"><meta itemprop="position" content="5" /><div class="item-info"> <h2 class="title" itemprop="name headline"><a href="/biblio/20942943-book-review-insect-symbiosis-volume-bourtzis-miller-editros-crc-press-taylor-francis-group-boca-raton-fl-pp-isbn" itemprop="url">Book review of Insect Symbiosis. Volume 2. Bourtzis, K.A. and Miller, T.A. editros. 2006 CRC Press, Taylor and Francis Group, Boca Raton, FL, 276 pp. ISBN 0-8493-1286-8</a></h2> <div class="metadata"> <small class="text-muted" style="text-transform:uppercase;display:block;line-height:2.5em;">Journal Article</small><span class="authors"> <span class="author">Hoy, M A</span> <span class="text-muted pubdata"> - Florida Entomologist</span> </span> </div> <div class="abstract">There are several definitions of symbiosis, but in this book it involves an association where one organism (the symbiont) lives within or on the body of another organism (the host), regardless of the actual effect on the host. Some symbioses are mutualistic, some parasitic, and some involve commensalism, in which one partner derives some benefit without either harming or benefiting the other. This is the second volume in this exciting and rapidly advancing topic by these editors. The first volume was published in 2003 and during the intervening three years additional data have been produced that make this book a<a href='#' onclick='$(this).hide().next().show().next().show();return false;' style='margin-left:10px;'>more »</a><span style='display:none;'> useful addition to your library. The first book provided chapters that provided an overview of insect symbiosis, discussions of the primary aphid symbiont Buchnera and other aphid symbionts, symbiosis in tsetse, symbionts in the weevil Sitophilus , the possible use of paratransgenic symbionts of Rhodnius prolixis to prevent disease transmission, bark beetle and fungal symbiosis, symbionts of tephritid fruit flies, symbionts affecting termite behavior, an overview of microsporidia as symbionts (parasites?) of insects, an overview of a newly discovered bacterium that causes sex-ratio distortion in insects and mites (from the Bacteroides group), symbionts that selectively kill male insects, and several chapters on the ubiquitous endosymbiont Wolbachia.</span><a href='#' onclick='$(this).hide().prev().hide().prev().show();return false;' style='margin-left:10px;display:none;'>« less</a></div><div class="metadata-links small clearfix text-muted" style="margin-top:15px;"> <div class="pure-menu pure-menu-horizontal pull-right" style="width:unset;"> </div> </div> </div> <div class="clearfix"></div> </div> </li> <li> <div class="article item document" itemprop="itemListElement" itemscope itemtype="http://schema.org/WebPage"><meta itemprop="position" content="6" /><div class="item-info"> <h2 class="title" itemprop="name headline"><a href="/pages/biblio/1342658-comparative-genomics-mortierella-elongata-its-bacterial-endosymbiont-mycoavidus-cysteinexigens" itemprop="url">Comparative genomics of <i>Mortierella elongata</i> and its bacterial endosymbiont <i>Mycoavidus cysteinexigens</i></a></h2> <div class="metadata"> <small class="text-muted" style="text-transform:uppercase;display:block;line-height:2.5em;">Journal Article</small><span class="authors"> <span class="author">Uehling, J.</span> ; <span class="author">Gryganskyi, A.</span> ; <span class="author">Hameed, K.</span> ; <span class="author">...</span> <span class="text-muted pubdata"> - Environmental Microbiology</span> </span> </div> <div class="abstract">One defining feature of cellular evolution is endosymbiosis of bacteria by eukaryotes. In addition to well-known bacterial origins for mitochondria and chloroplasts, multiple origins of bacterial endosymbiosis are known within the cells of diverse animals, plants and fungi. Early-diverging lineages of terrestrial fungi harbor endosymbiotic bacteria belonging to the Burkholderiaceae. We sequenced the metagenome of the soil-inhabiting fungus Mortierella elongata and assembled the complete circular chromosome of its endosymbiont, Mycoavidus cysteinexigens, which we place within a lineage of endofungal symbionts that are sister clade to Burkholderia. Furthermore, the genome of M. elongata strain AG77 features a core set of primary<a href='#' onclick='$(this).hide().next().show().next().show();return false;' style='margin-left:10px;'>more »</a><span style='display:none;'> metabolic pathways for degradation of simple carbohydrates and lipid biosynthesis, while the M. cysteinexigens (AG77) genome is reduced in size and function. Our experiments using antibiotics to cure the endobacterium from the host demonstrate that the fungal host metabolism is highly modulated by presence/absence of M. cysteinexigens. Independent comparative phylogenomic analyses of fungal and bacterial genomes are consistent with an ancient origin for M. elongata – M. cysteinexigens symbiosis, most likely over 350 million years ago and concomitant with the terrestrialization of Earth and diversification of land fungi and plants.</span><a href='#' onclick='$(this).hide().prev().hide().prev().show();return false;' style='margin-left:10px;display:none;'>« less</a></div><div class="metadata-links small clearfix text-muted" style="margin-top:15px;"> <span class="fa fa-book text-muted" aria-hidden="true"></span> Cited by 102<div class="pure-menu pure-menu-horizontal pull-right" style="width:unset;"> <ul class="pure-menu-list"> <li class="pure-menu-item"><span class="item-info-ftlink"><a class="misc doi-link " href="https://doi.org/10.1111/1462-2920.13669" target="_blank" rel="noopener" title="Link to document DOI" data-ostiid="1342658" data-product-type="Journal Article" data-product-subtype="AM" >https://doi.org/10.1111/1462-2920.13669</a></span></li> <li class="pure-menu-item"><span class="item-info-ftlink"><a class="misc fulltext-link " href="/pages/servlets/purl/1342658" title="Link to document media" target="_blank" rel="noopener" data-ostiid="1342658" data-product-type="Journal Article" data-product-subtype="AM" >Full Text Available</a></span></li> </ul> </div> </div> </div> <div class="clearfix"></div> </div> </li> </ul> </aside> </div> </section> </div> <div class="col-sm-3 order-sm-3"> <ul class="nav nav-stacked"> <li class="active"><a class="tab-nav disabled" data-tab="related" style="color: #636c72 !important; opacity: 1;"><span class="fa fa-angle-right"></span> Similar Records</a></li> </ul> </div> </div> </section> </div></div> </div> </div> </section> <footer class="" style="background-color:#f9f9f9;"> <div class="footer-minor"> <div class="container"> <hr class="footer-separator"/> <br/> <div class="col text-center mt-3"> <div class="pure-menu pure-menu-horizontal"> <ul class="pure-menu-list" id="footer-org-menu"> <li class="pure-menu-item"> <a href="https://energy.gov" target="_blank" rel="noopener noreferrer"> <img src="data:image/gif;base64,R0lGODlhAQABAIAAAP///wAAACH5BAEAAAAALAAAAAABAAEAAAICRAEAOw==" class="sprite sprite-footer-us-doe-min" alt="U.S. Department of Energy" /> </a> </li> <li class="pure-menu-item"> <a href="https://www.energy.gov/science/office-science" target="_blank" rel="noopener noreferrer"> <img src="data:image/gif;base64,R0lGODlhAQABAIAAAP///wAAACH5BAEAAAAALAAAAAABAAEAAAICRAEAOw==" class="sprite sprite-footer-office-of-science-min" alt="Office of Science" /> </a> </li> <li class="pure-menu-item"> <a href="https://www.osti.gov" target="_blank" rel="noopener noreferrer"> <img src="data:image/gif;base64,R0lGODlhAQABAIAAAP///wAAACH5BAEAAAAALAAAAAABAAEAAAICRAEAOw==" class="sprite sprite-footer-osti-min" alt="Office of Scientific and Technical Information" /> </a> </li> </ul> </div> </div> <div class="col text-center small" style="margin-top: 0.5em;margin-bottom:2.0rem;"> <div class="row justify-content-center" style="color:white"> <div class="pure-menu pure-menu-horizontal" style='white-space:normal'> <ul class="pure-menu-list"> <li class="pure-menu-item"><a href="https://www.osti.gov/disclaim" class="pure-menu-link" target="_blank" ref="noopener noreferrer"><span class="fa fa-institution"></span> Website Policies <span class="d-none d-sm-inline d-print-none" style="color:#737373;">/ Important Links</span></a></li> <li class="pure-menu-item" style='float:none;'><a href="/pages/contact" class="pure-menu-link"><span class="fa fa-comments-o"></span>Contact Us</a></li> <li class="d-block d-md-none mb-1"></li> <li class="pure-menu-item" style='float:none;'><a target="_blank" title="Vulnerability Disclosure Program" class="pure-menu-link" href="https://doe.responsibledisclosure.com/hc/en-us" rel="noopener noreferrer">Vulnerability Disclosure Program</a></li> <li class="d-block d-lg-none mb-1"></li> <li class="pure-menu-item" style="float:none;"><a href="https://www.facebook.com/ostigov" target="_blank" class="pure-menu-link social ext fa fa-facebook" rel="noopener noreferrer"><span class="sr-only" style="background-color: #fff; color: #333;">Facebook</span></a></li> <li class="pure-menu-item" style="float:none;"><a href="https://twitter.com/OSTIgov" target="_blank" class="pure-menu-link social ext fa fa-twitter" rel="noopener noreferrer"><span class="sr-only" style="background-color: #fff; color: #333;">Twitter</span></a></li> <li class="pure-menu-item" style="float:none;"><a href="https://www.youtube.com/user/ostigov" target="_blank" class="pure-menu-link social ext fa fa-youtube-play" rel="noopener noreferrer"><span class="sr-only" style="background-color: #fff; color: #333;">Youtube</span></a></li> </ul> </div> </div> </div> </div> </div> </footer> <link href="/pages/css/pages.fonts.240327.0205.css" rel="stylesheet"> <script src="/pages/js/pages.240327.0205.js"></script><noscript></noscript> <script defer src="/pages/js/pages.biblio.240327.0205.js"></script><noscript></noscript> <script defer src="/pages/js/lity.js"></script><noscript></noscript> <script async type="text/javascript" src="/pages/js/Universal-Federated-Analytics-Min.js?agency=DOE" id="_fed_an_ua_tag"></script><noscript></noscript> </body>  </html>

Title: Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi

Abstract

Citation Formats

Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites journal, January 1997

The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont journal, November 2011

Ab initio Gene Finding in Drosophila Genomic DNA journal, April 2000

A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood Approach journal, May 2001

Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
journal, January 1997

The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont
journal, November 2011

Ab initio Gene Finding in Drosophila Genomic DNA
journal, April 2000

A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood Approach
journal, May 2001