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Title: Crystallization by particle attachment in synthetic, biogenic, and geologic environments

Abstract

Field and laboratory observations show that crystals commonly form by the addition and attachment of particles that range from multi-ion complexes to fully formed nanoparticles. The particles involved in these nonclassical pathways to crystallization are diverse, in contrast to classical models that consider only the addition of monomeric chemical species. We review progress toward understanding crystal growth by particle-attachment processes and show that multiple pathways result from the interplay of free-energy landscapes and reaction dynamics. Much remains unknown about the fundamental aspects, particularly the relationships between solution structure, interfacial forces, and particle motion. Developing a predictive description that connects molecular details to ensemble behavior will require revisiting long-standing interpretations of crystal formation in synthetic systems, biominerals, and patterns of mineralization in natural environments.

Authors:
 [1];  [2];  [3];  [4];  [5];  [6];  [7];  [8];  [9];  [7];  [10];  [11];  [12];  [13];  [11]
+ Show Author Affiliations
  1. Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Univ. of Washington, Seattle, WA (United States)
  2. Univ. of Wisconsin, Madison, WI (United States); Harvard Univ., Cambridge, MA (United States)
  3. Eindhoven Univ. of Technology, Eindhoven (Netherlands)
  4. Univ. of Minnesota, Minneapolis, MN (United States)
  5. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  6. Northwestern Univ., Evanston, IL (United States)
  7. Univ. of California, Berkeley, CA (United States)
  8. Univ. of Houston, Houston, TX (United States)
  9. Univ. of California, Davis, CA (United States)
  10. Univ. of Delaware, Newark, DE (United States)
  11. Virginia Polytechnic Inst. and State Univ. (Virginia Tech), Blacksburg, VA (United States)
  12. Univ. of Leeds, West Yorkshire (England)
  13. Univ. of Konstanz, Constance (Germany)
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1512223
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Accepted Manuscript
Journal Name:
Science
Additional Journal Information:
Journal Volume: 349; Journal Issue: 6247; Journal ID: ISSN 0036-8075
Publisher:
AAAS
Country of Publication:
United States
Language:
English
Subject:
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY

Citation Formats

De Yoreo, James J., Gilbert, Pupa U. P. A., Sommerdijk, Nico A. J. M., Penn, R. Lee, Whitelam, Stephen, Joester, Derk, Zhang, Hengzhong, Rimer, Jeffrey D., Navrotsky, Alexandra, Banfield, Jillian F., Wallace, Adam F., Michel, F. Marc, Meldrum, Fiona C., Colfen, Helmut, and Dove, Patricia M. Crystallization by particle attachment in synthetic, biogenic, and geologic environments. United States: N. p., 2015. Web. doi:10.1126/science.aaa6760.
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De Yoreo, James J., Gilbert, Pupa U. P. A., Sommerdijk, Nico A. J. M., Penn, R. Lee, Whitelam, Stephen, Joester, Derk, Zhang, Hengzhong, Rimer, Jeffrey D., Navrotsky, Alexandra, Banfield, Jillian F., Wallace, Adam F., Michel, F. Marc, Meldrum, Fiona C., Colfen, Helmut, & Dove, Patricia M. Crystallization by particle attachment in synthetic, biogenic, and geologic environments. United States. https://doi.org/10.1126/science.aaa6760
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De Yoreo, James J., Gilbert, Pupa U. P. A., Sommerdijk, Nico A. J. M., Penn, R. Lee, Whitelam, Stephen, Joester, Derk, Zhang, Hengzhong, Rimer, Jeffrey D., Navrotsky, Alexandra, Banfield, Jillian F., Wallace, Adam F., Michel, F. Marc, Meldrum, Fiona C., Colfen, Helmut, and Dove, Patricia M. Fri . "Crystallization by particle attachment in synthetic, biogenic, and geologic environments". United States. https://doi.org/10.1126/science.aaa6760. https://www.osti.gov/servlets/purl/1512223.
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@article{osti_1512223,
title = {Crystallization by particle attachment in synthetic, biogenic, and geologic environments},
author = {De Yoreo, James J. and Gilbert, Pupa U. P. A. and Sommerdijk, Nico A. J. M. and Penn, R. Lee and Whitelam, Stephen and Joester, Derk and Zhang, Hengzhong and Rimer, Jeffrey D. and Navrotsky, Alexandra and Banfield, Jillian F. and Wallace, Adam F. and Michel, F. Marc and Meldrum, Fiona C. and Colfen, Helmut and Dove, Patricia M.},
abstractNote = {Field and laboratory observations show that crystals commonly form by the addition and attachment of particles that range from multi-ion complexes to fully formed nanoparticles. The particles involved in these nonclassical pathways to crystallization are diverse, in contrast to classical models that consider only the addition of monomeric chemical species. We review progress toward understanding crystal growth by particle-attachment processes and show that multiple pathways result from the interplay of free-energy landscapes and reaction dynamics. Much remains unknown about the fundamental aspects, particularly the relationships between solution structure, interfacial forces, and particle motion. Developing a predictive description that connects molecular details to ensemble behavior will require revisiting long-standing interpretations of crystal formation in synthetic systems, biominerals, and patterns of mineralization in natural environments.},
doi = {10.1126/science.aaa6760},
journal = {Science},
number = 6247,
volume = 349,
place = {United States},
year = {Fri Jul 31 00:00:00 EDT 2015},
month = {Fri Jul 31 00:00:00 EDT 2015}
}
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    • Gilbert, Pupa U. P. A.; Porter, Susannah M.; Sun, Chang-Yu
    • Proceedings of the National Academy of Sciences, Vol. 116, Issue 36
    • DOI: 10.1073/pnas.1902273116

    Biological control of aragonite formation in stony corals
    journal, June 2017

    • Von Euw, Stanislas; Zhang, Qihong; Manichev, Viacheslav
    • Science, Vol. 356, Issue 6341
    • DOI: 10.1126/science.aam6371

    Aqueous ball milling of nacre constituents facilitates directional self-assembly of aragonite nanoparticles of the gastropod Haliotis glabra
    journal, November 2017

    • Lemloh, Marie-Louise; Verch, Andreas; Weiss, Ingrid M.
    • Journal of The Royal Society Interface, Vol. 14, Issue 136
    • DOI: 10.1098/rsif.2017.0450

    Shape-preserving amorphous-to-crystalline transformation of CaCO 3 revealed by in situ TEM
    journal, February 2020

    • Liu, Zhaoming; Zhang, Zhisen; Wang, Zheming
    • Proceedings of the National Academy of Sciences, Vol. 117, Issue 7
    • DOI: 10.1073/pnas.1914813117

    Size-dependent thermodynamic structural selection in colloidal crystallization
    journal, September 2019

    Bioinspired Materials: From Living Systems to New Concepts in Materials Chemistry
    journal, July 2019

    • Böhm, Corinna F.; Harris, Joe; Schodder, Philipp I.
    • Materials, Vol. 12, Issue 13
    • DOI: 10.3390/ma12132117

    Precipitation of silver particles with controlled morphologies from aqueous solutions
    journal, January 2020

    • Wang, Lijuan; Andreassen, Jens-Petter; Ucar, Seniz
    • CrystEngComm, Vol. 22, Issue 3
    • DOI: 10.1039/c9ce01601e

    Phosphorylated chitosan to promote biomimetic mineralization of type I collagen as a strategy for dentin repair and bone tissue engineering
    journal, January 2019

    • Zheng, Bo; Mao, Caiyun; Gu, Tianyi
    • New Journal of Chemistry, Vol. 43, Issue 4
    • DOI: 10.1039/c8nj04889d

    Solid-State Transformation of Amorphous Calcium Carbonate to Aragonite Captured by CryoTEM
    journal, August 2017

    • Walker, Jessica M.; Marzec, Bartosz; Nudelman, Fabio
    • Angewandte Chemie International Edition, Vol. 56, Issue 39
    • DOI: 10.1002/anie.201703158

    Crystallization Mechanism of 9,9‐Diphenyl‐dibenzosilole from Solids
    journal, January 2020

    Formation dynamics of mesocrystals composed of organically modified CeO 2 nanoparticles: analogy to a particle formation model
    journal, January 2019

    • Litwinowicz, Andrzej-Alexander; Takami, Seiichi; Asahina, Shunsuke
    • CrystEngComm, Vol. 21, Issue 25
    • DOI: 10.1039/c9ce00473d

    Hydrodynamic assembly of two-dimensional layered double hydroxide nanostructures
    journal, November 2018

    Correlations of crystal shape and lateral orientation in bioinspired CaCO 3 mineralization
    journal, January 2018

    • Liu, Ming-Feng; Lu, Zihao; Zhang, Zhisen
    • CrystEngComm, Vol. 20, Issue 35
    • DOI: 10.1039/c8ce00491a

    Lateral water structure connects metal oxide nanoparticle faces
    journal, January 2019

    • Zarzycki, Piotr; Colla, Christopher A.; Gilbert, Benjamin
    • Journal of Materials Research, Vol. 34, Issue 3
    • DOI: 10.1557/jmr.2018.478

    Shape-controlled synthesis and in situ characterisation of anisotropic Au nanomaterials using liquid cell transmission electron microscopy
    journal, January 2019

    • Wang, Shih-Ting; Lin, Yiyang; Nielsen, Michael H.
    • Nanoscale, Vol. 11, Issue 36
    • DOI: 10.1039/c9nr01474h

    Complementarity and Uncertainty in Intrafibrillar Mineralization of Collagen
    journal, August 2016

    • Jiao, Kai; Niu, Li-Na; Ma, Chu-Fan
    • Advanced Functional Materials, Vol. 26, Issue 38
    • DOI: 10.1002/adfm.201602207

    Programing Performance of Silk Fibroin Materials by Controlled Nucleation
    journal, October 2016

    • Chen, Zhengwei; Zhang, Honghao; Lin, Zaifu
    • Advanced Functional Materials, Vol. 26, Issue 48
    • DOI: 10.1002/adfm.201602908

    Precrystalline Aggregates Enable Control over Organic Crystallization in Solution
    journal, November 2015

    • Shahar, Chen; Dutta, Sounak; Weissman, Haim
    • Angewandte Chemie International Edition, Vol. 55, Issue 1
    • DOI: 10.1002/anie.201507659

    Diverse Nanoassemblies of Graphene Quantum Dots and Their Mineralogical Counterparts
    journal, October 2019

    • Qu, Zhi‐bei; Feng, Wei‐Jie; Wang, Yichun
    • Angewandte Chemie International Edition, Vol. 59, Issue 22
    • DOI: 10.1002/anie.201908216

    Periodic Nucleation of Calcium Phosphate in a Stirred Biocatalytic Reaction
    journal, February 2020

    • Bohner, Bíborka; Bánsági, Tamás; Tóth, Ágota
    • Angewandte Chemie International Edition, Vol. 59, Issue 7
    • DOI: 10.1002/anie.201911213

    Crystallization by particle attachment is a colloidal assembly process
    journal, October 2019

    • Mirabello, Giulia; Ianiro, Alessandro; Bomans, Paul H. H.
    • Nature Materials, Vol. 19, Issue 4
    • DOI: 10.1038/s41563-019-0511-4

    Oxidation-assisted alkaline precipitation: the effect of H 2 O 2 on the size of CuO and FeOOH nanoparticles
    journal, January 2019

    • Eggermont, Sam G. F.; Rua-Ibarz, Ana; Tirez, Kristof
    • RSC Advances, Vol. 9, Issue 51
    • DOI: 10.1039/c9ra03086g

    Ultrahigh piezoelectric coefficient of a lead-free K 0.5 Na 0.5 NbO 3 -based single crystal fabricated by a simple seed-free solid-state growth method
    journal, January 2019

    • Jiang, Minhong; Zhang, Jingwei; Rao, Guanghui
    • Journal of Materials Chemistry C, Vol. 7, Issue 47
    • DOI: 10.1039/c9tc05143k

    Trends in mica–mica adhesion reflect the influence of molecular details on long-range dispersion forces underlying aggregation and coalignment
    journal, July 2017

    • Li, Dongsheng; Chun, Jaehun; Xiao, Dongdong
    • Proceedings of the National Academy of Sciences, Vol. 114, Issue 29
    • DOI: 10.1073/pnas.1621186114

    Amorphous calcium carbonate particles form coral skeletons
    journal, August 2017

    • Mass, Tali; Giuffre, Anthony J.; Sun, Chang-Yu
    • Proceedings of the National Academy of Sciences, Vol. 114, Issue 37
    • DOI: 10.1073/pnas.1707890114

    Recombinant Escherichia coli as a biofactory for various single- and multi-element nanomaterials
    journal, May 2018

    • Choi, Yoojin; Park, Tae Jung; Lee, Doh C.
    • Proceedings of the National Academy of Sciences, Vol. 115, Issue 23
    • DOI: 10.1073/pnas.1804543115

    Entropic colloidal crystallization pathways via fluid–fluid transitions and multidimensional prenucleation motifs
    journal, July 2019

    • Lee, Sangmin; Teich, Erin G.; Engel, Michael
    • Proceedings of the National Academy of Sciences, Vol. 116, Issue 30
    • DOI: 10.1073/pnas.1905929116

    The 2019 materials by design roadmap
    journal, October 2018

    • Alberi, Kirstin; Nardelli, Marco Buongiorno; Zakutayev, Andriy
    • Journal of Physics D: Applied Physics, Vol. 52, Issue 1
    • DOI: 10.1088/1361-6463/aad926

    Microvasculopathy, Luminal Calcification and Premature Aging in Fetuin-A Deficient Mice
    posted_content, October 2019

    • Herrmann, Marietta; Babler, Anne; Moshkova, Irina
    • bioRxiv
    • DOI: 10.1101/577098

    Biomimetic mineral self-organization from silica-rich spring waters
    journal, March 2017

    • García-Ruiz, Juan Manuel; Nakouzi, Elias; Kotopoulou, Electra
    • Science Advances, Vol. 3, Issue 3
    • DOI: 10.1126/sciadv.1602285

    Nanostructure, osteopontin, and mechanical properties of calcitic avian eggshell
    journal, March 2018

    • Athanasiadou, Dimitra; Jiang, Wenge; Goldbaum, Dina
    • Science Advances, Vol. 4, Issue 3
    • DOI: 10.1126/sciadv.aar3219

    A Novel Class of Injectable Bioceramics That Glue Tissues and Biomaterials
    journal, December 2018

    • Pujari-Palmer, Michael; Guo, Hua; Wenner, David
    • Materials, Vol. 11, Issue 12
    • DOI: 10.3390/ma11122492

    Polymer-Functionalised Nanograins of Mg-Doped Amorphous Calcium Carbonate via a Flow-Chemistry Approach
    journal, June 2019

    • Demmert, Benedikt; Schinzel, Frank; Schüßler, Martina
    • Materials, Vol. 12, Issue 11
    • DOI: 10.3390/ma12111818

    Nanocrystalline Principal Slip Zones and Their Role in Controlling Crustal Fault Rheology
    journal, May 2019

    • Verberne, Berend A.; Plümper, Oliver; Spiers, Christopher J.
    • Minerals, Vol. 9, Issue 6
    • DOI: 10.3390/min9060328

    Au Catalyzed Carbon Diffusion in Ni: A Case of Lattice Compatibility Stabilized Metastable Intermediates
    journal, March 2018

    • Kang, Jian-Xin; Zhang, Dong-Feng; Guo, Gen-Cai
    • Advanced Functional Materials, Vol. 28, Issue 21
    • DOI: 10.1002/adfm.201706434

    Strategy to control magnetic coercivity by elucidating crystallization pathway-dependent microstructural evolution of magnetite mesocrystals
    journal, January 2020

    Shape-controlled synthesis of nanostructured Co-doped ZnO thin films and their magnetic properties
    journal, January 2018

    Oriented attachment growth of hundred-nanometer-size LaTaON 2 single crystals in molten salts for enhanced photoelectrochemical water splitting
    journal, January 2018

    • Zhou, Junkang; Zhou, Chenguang; Shi, Zhan
    • Journal of Materials Chemistry A, Vol. 6, Issue 17
    • DOI: 10.1039/c8ta02233j

    The mechanism of structural changes and crystallization kinetics of amorphous red phosphorus to black phosphorus under high pressure
    journal, January 2019

    • Xiang, Heng; Nie, Yuting; Zheng, Hechuang
    • Chemical Communications, Vol. 55, Issue 56
    • DOI: 10.1039/c9cc02194a

    Natural, incidental, and engineered nanomaterials and their impacts on the Earth system
    journal, March 2019

    Preparation of ZnO Nanoparticles with High Dispersibility Based on Oriented Attachment (OA) Process
    journal, June 2019

    Periodic Nucleation of Calcium Phosphate in a Stirred Biocatalytic Reaction
    journal, January 2020

    • Bohner, Bíborka; Bánsági, Tamás; Tóth, Ágota
    • Angewandte Chemie, Vol. 132, Issue 7
    • DOI: 10.1002/ange.201911213

    Evaluating structure selection in the hydrothermal growth of FeS2 pyrite and marcasite
    journal, December 2016

    • Kitchaev, Daniil A.; Ceder, Gerbrand
    • Nature Communications, Vol. 7, Issue 1
    • DOI: 10.1038/ncomms13799

    From spinodal decomposition to alternating layered structure within single crystals of biogenic magnesium calcite
    journal, October 2019

    Characterizing the length-dependence of DNA nanotube end-to-end joining rates
    journal, January 2020

    • Pacella, Michael S.; Mardanlou, Vahid; Agarwal, Siddharth
    • Molecular Systems Design & Engineering, Vol. 5, Issue 2
    • DOI: 10.1039/c9me00068b

    Controlling the spatio-temporal dose distribution during STEM imaging by subsampled acquisition: In-situ observations of kinetic processes in liquids
    journal, August 2019

    • Mehdi, B. L.; Stevens, A.; Kovarik, L.
    • Applied Physics Letters, Vol. 115, Issue 6
    • DOI: 10.1063/1.5096595

    Oriented attachment induces fivefold twins by forming and decomposing high-energy grain boundaries
    journal, November 2019

    Struvite Crystallisation and the Effect of Co2+ Ions
    journal, August 2019

    • Hövelmann, Jörn; Stawski, Tomasz M.; Freeman, Helen M.
    • Minerals, Vol. 9, Issue 9
    • DOI: 10.3390/min9090503

    Architecture of crossed-lamellar bivalve shells: the southern giant clam (Tridacna derasa, Roding, 1798)
    text, January 2017

    Defining Aluminum-Zoning during Synthesis of ZSM-5 Zeolites
    text, January 2020

    Local Structure Order Assisted Two-step Crystal Nucleation in Polyethylene
    text, January 2017

    The Crystallization of Amorphous Calcium Carbonate is Kinetically Governed by Ion Impurities and Water
    journal, February 2018

    • Albéric, Marie; Bertinetti, Luca; Zou, Zhaoyong
    • Advanced Science, Vol. 5, Issue 5
    • DOI: 10.1002/advs.201701000

    Calcium sulfate precipitation pathways in natural and engineered environments
    journal, December 2019

    Reactive crystallization: From mixing to control of kinetics by additives
    journal, April 2020

    • Teychené, Sébastien; Rodríguez-Ruiz, Isaac; Ramamoorthy, Raj Kumar
    • Current Opinion in Colloid & Interface Science, Vol. 46
    • DOI: 10.1016/j.cocis.2020.01.003

    Mineral self-organization on a lifeless planet
    journal, December 2020

    Structure Factor of EuCl3 Aqueous Solutions via Coupled Molecular Dynamics Simulations and Integral Equations
    journal, February 2020

    • Ramamoorthy, Raj Kumar; Levesque, Maximilien; Belloni, Luc
    • The Journal of Physical Chemistry B
    • DOI: 10.1021/acs.jpcb.9b11537

    Combined Experimental and Theoretical Approach to the Kinetics of Magnetite Crystal Growth from Primary Particles
    journal, February 2017

    • Widdrat, Marc; Schneck, Emanuel; Reichel, Victoria
    • The Journal of Physical Chemistry Letters, Vol. 8, Issue 6
    • DOI: 10.1021/acs.jpclett.6b02977

    Crystallization within Intermediate Amorphous Phases Determines the Polycrystallinity of Nanoparticles from Coprecipitation
    journal, December 2021

    Direct TEM observations of growth mechanisms of two-dimensional MoS2 flakes
    journal, July 2016

    • Fei, Linfeng; Lei, Shuijin; Zhang, Wei-Bing
    • Nature Communications, Vol. 7, Issue 1
    • DOI: 10.1038/ncomms12206

    Evaluating structure selection in the hydrothermal growth of FeS2 pyrite and marcasite
    journal, December 2016

    • Kitchaev, Daniil A.; Ceder, Gerbrand
    • Nature Communications, Vol. 7, Issue 1
    • DOI: 10.1038/ncomms13799

    Chiral acidic amino acids induce chiral hierarchical structure in calcium carbonate
    journal, April 2017

    • Jiang, Wenge; Pacella, Michael S.; Athanasiadou, Dimitra
    • Nature Communications, Vol. 8, Issue 1
    • DOI: 10.1038/ncomms15066

    Coupled morphological and structural evolution of δ-MnO 2 to α-MnO 2 through multistage oriented assembly processes: the role of Mn( iii )
    journal, January 2020

    • Liang, Xinran; Post, Jeffrey E.; Lanson, Bruno
    • Environmental Science: Nano, Vol. 7, Issue 1
    • DOI: 10.1039/c9en01000a

    Biomineralization by particle attachment in early animals
    journal, August 2019

    • Gilbert, Pupa U. P. A.; Porter, Susannah M.; Sun, Chang-Yu
    • Proceedings of the National Academy of Sciences, Vol. 116, Issue 36
    • DOI: 10.1073/pnas.1902273116

    Microvasculopathy, Luminal Calcification and Premature Aging in Fetuin-A Deficient Mice
    posted_content, October 2019

    • Herrmann, Marietta; Babler, Anne; Moshkova, Irina
    • bioRxiv
    • DOI: 10.1101/577098

    Self-organization in precipitation reactions far from the equilibrium
    journal, August 2016

    Biomimetic mineral self-organization from silica-rich spring waters
    journal, March 2017

    • García-Ruiz, Juan Manuel; Nakouzi, Elias; Kotopoulou, Electra
    • Science Advances, Vol. 3, Issue 3
    • DOI: 10.1126/sciadv.1602285

    Crystal nucleation initiated by transient ion-surface interactions at aerosol interfaces
    journal, July 2017

    Nanostructure, osteopontin, and mechanical properties of calcitic avian eggshell
    journal, March 2018

    • Athanasiadou, Dimitra; Jiang, Wenge; Goldbaum, Dina
    • Science Advances, Vol. 4, Issue 3
    • DOI: 10.1126/sciadv.aar3219

    Repair of tooth enamel by a biomimetic mineralization frontier ensuring epitaxial growth
    journal, August 2019

    Amorphous Phase Mediated Crystallization: Fundamentals of Biomineralization
    journal, January 2018

    Polymer-Functionalised Nanograins of Mg-Doped Amorphous Calcium Carbonate via a Flow-Chemistry Approach
    journal, June 2019

    • Demmert, Benedikt; Schinzel, Frank; Schüßler, Martina
    • Materials, Vol. 12, Issue 11
    • DOI: 10.3390/ma12111818

    Metal Sequestration through Coupled Dissolution–Precipitation at the Brucite–Water Interface
    journal, August 2018

    • Hövelmann, Jörn; Putnis, Christine; Benning, Liane
    • Minerals, Vol. 8, Issue 8
    • DOI: 10.3390/min8080346

    The Onset of Phase Separation in the Double Perovskite Oxide La$_2$MnNiO$_6$
    text, January 2017

    Impact of salinity on element incorporation in two benthic foraminiferal species with contrasting Magnesium contents
    posted_content, December 2017

    • Geerken, Esmee; de Nooijer, Lennart Jan; van Dijk, Inge
    • Biogeosciences Discussions
    • DOI: 10.5194/bg-2017-481
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