DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: ROY Revisited, Again: The Eighth Solved Structure

Abstract

X-ray powder diffraction and crystal structure prediction algorithms are used in synergy to establish the crystal structure of the eighth polymorph of ROY, form R05.

Authors:
 [1];  [1];  [2];  [3];  [4];  [5];  [1];  [6];  [2]
  1. New York Univ. (NYU), NY (United States). Dept. of Chemistry and Molecular Design Inst.
  2. Univ. of Nevada, Las Vegas, NV (United States). High Pressure Science and Engineering Center (HiPSEC), and Dept. of Physics and Astronomy
  3. Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS), X-ray Science Division
  4. Brookhaven National Lab. (BNL), Upton, NY (United States). National Synchrotron Light Source II (NSLS-II), Photon Sciences Division
  5. New York Univ. (NYU), NY (United States). Dept. of Chemistry and Molecular Design Inst.; Harvard Univ., Cambridge, MA (United States). Dept. of Chemistry and Chemical Biology
  6. New York Univ. (NYU), NY (United States). Dept. of Chemistry and Molecular Design Inst.; Waseda Univ., Shinjuku (Japan). Dept. of Advanced Science and Engineering
Publication Date:
Research Org.:
Brookhaven National Lab. (BNL), Upton, NY (United States); Argonne National Lab. (ANL), Argonne, IL (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES); National Science Foundation (NSF); National Institutes of Health (NIH); USDOE National Nuclear Security Administration (NNSA)
OSTI Identifier:
1436447
Alternate Identifier(s):
OSTI ID: 1461212; OSTI ID: 1487030
Report Number(s):
BNL-203633-2018-JAAM
Journal ID: ISSN 1359-6640; FDISE6
Grant/Contract Number:  
SC0012704; NA0001982; AC02-06CH11357
Resource Type:
Accepted Manuscript
Journal Name:
Faraday Discussions
Additional Journal Information:
Journal Volume: 211; Journal ID: ISSN 1359-6640
Publisher:
Royal Society of Chemistry
Country of Publication:
United States
Language:
English
Subject:
36 MATERIALS SCIENCE

Citation Formats

Tan, Melissa, Shtukenberg, Alexander G., Zhu, Shengcai, Xu, Wenqian, Dooryhee, Eric, Nichols, Shane M., Ward, Michael David, Kahr, Bart, and Zhu, Qiang. ROY Revisited, Again: The Eighth Solved Structure. United States: N. p., 2018. Web. doi:10.1039/C8FD00039E.
Tan, Melissa, Shtukenberg, Alexander G., Zhu, Shengcai, Xu, Wenqian, Dooryhee, Eric, Nichols, Shane M., Ward, Michael David, Kahr, Bart, & Zhu, Qiang. ROY Revisited, Again: The Eighth Solved Structure. United States. https://doi.org/10.1039/C8FD00039E
Tan, Melissa, Shtukenberg, Alexander G., Zhu, Shengcai, Xu, Wenqian, Dooryhee, Eric, Nichols, Shane M., Ward, Michael David, Kahr, Bart, and Zhu, Qiang. Mon . "ROY Revisited, Again: The Eighth Solved Structure". United States. https://doi.org/10.1039/C8FD00039E. https://www.osti.gov/servlets/purl/1436447.
@article{osti_1436447,
title = {ROY Revisited, Again: The Eighth Solved Structure},
author = {Tan, Melissa and Shtukenberg, Alexander G. and Zhu, Shengcai and Xu, Wenqian and Dooryhee, Eric and Nichols, Shane M. and Ward, Michael David and Kahr, Bart and Zhu, Qiang},
abstractNote = {X-ray powder diffraction and crystal structure prediction algorithms are used in synergy to establish the crystal structure of the eighth polymorph of ROY, form R05.},
doi = {10.1039/C8FD00039E},
journal = {Faraday Discussions},
number = ,
volume = 211,
place = {United States},
year = {Mon Jan 01 00:00:00 EST 2018},
month = {Mon Jan 01 00:00:00 EST 2018}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Citation Metrics:
Cited by: 42 works
Citation information provided by
Web of Science

Figures / Tables:

Fig. 1 Fig. 1: ROY molecule (left). The torsion angles are indicated by θthio and θphen. Optical micrograph of spherulites of three ROY phases (YN, ON, R05) grown from the melt viewed with polarized light microscope (right).

Save / Share:

Works referenced in this record:

The Third Ambient Aspirin Polymorph
journal, May 2017

  • Shtukenberg, Alexander G.; Hu, Chunhua T.; Zhu, Qiang
  • Crystal Growth & Design, Vol. 17, Issue 6
  • DOI: 10.1021/acs.cgd.7b00673

Powder diffraction and crystal structure prediction identify four new coumarin polymorphs
journal, January 2017

  • Shtukenberg, Alexander G.; Zhu, Qiang; Carter, Damien J.
  • Chemical Science, Vol. 8, Issue 7
  • DOI: 10.1039/C7SC00168A

Projector augmented-wave method
journal, December 1994


The General Utility Lattice Program ( GULP )
journal, May 2003


DFTB+, a Sparse Matrix-Based Implementation of the DFTB Method
journal, July 2007

  • Aradi, B.; Hourahine, B.; Frauenheim, Th.
  • The Journal of Physical Chemistry A, Vol. 111, Issue 26
  • DOI: 10.1021/jp070186p

Charge equilibration for molecular dynamics simulations
journal, April 1991

  • Rappe, Anthony K.; Goddard, William A.
  • The Journal of Physical Chemistry, Vol. 95, Issue 8
  • DOI: 10.1021/j100161a070

Comparison of Polymorphic Molecular Crystal Structures through Hirshfeld Surface Analysis
journal, April 2007

  • McKinnon, Joshua J.; Fabbiani, Francesca P. A.; Spackman, Mark A.
  • Crystal Growth & Design, Vol. 7, Issue 4
  • DOI: 10.1021/cg060773k

New developments in evolutionary structure prediction algorithm USPEX
journal, April 2013

  • Lyakhov, Andriy O.; Oganov, Artem R.; Stokes, Harold T.
  • Computer Physics Communications, Vol. 184, Issue 4
  • DOI: 10.1016/j.cpc.2012.12.009

COMPACK : a program for identifying crystal structure similarity using distances
journal, January 2005

  • Chisholm, James Alexander; Motherwell, Sam
  • Journal of Applied Crystallography, Vol. 38, Issue 1
  • DOI: 10.1107/S0021889804027074

DDT Polymorphism and the Lethality of Crystal Forms
journal, June 2017

  • Yang, Jingxiang; Hu, C. T.; Zhu, Xiaolong
  • Angewandte Chemie International Edition, Vol. 56, Issue 34
  • DOI: 10.1002/anie.201703028

DREIDING: a generic force field for molecular simulations
journal, December 1990

  • Mayo, Stephen L.; Olafson, Barry D.; Goddard, William A.
  • The Journal of Physical Chemistry, Vol. 94, Issue 26, p. 8897-8909
  • DOI: 10.1021/j100389a010

Nonamorphism in Flufenamic Acid and a New Record for a Polymorphic Compound with Solved Structures
journal, June 2012

  • López-Mejías, Vilmalí; Kampf, Jeff W.; Matzger, Adam J.
  • Journal of the American Chemical Society, Vol. 134, Issue 24
  • DOI: 10.1021/ja302601f

Efficient iterative schemes for ab initio total-energy calculations using a plane-wave basis set
journal, October 1996


Perspective: Advances and challenges in treating van der Waals dispersion forces in density functional theory
journal, September 2012

  • Klimeš, Jiří; Michaelides, Angelos
  • The Journal of Chemical Physics, Vol. 137, Issue 12
  • DOI: 10.1063/1.4754130

Accurate and Efficient Method for Many-Body van der Waals Interactions
journal, June 2012


Constrained evolutionary algorithm for structure prediction of molecular crystals: methodology and applications
journal, May 2012

  • Zhu, Qiang; Oganov, Artem R.; Glass, Colin W.
  • Acta Crystallographica Section B Structural Science, Vol. 68, Issue 3
  • DOI: 10.1107/S0108768112017466

Resorcinol Crystallization from the Melt: A New Ambient Phase and New “Riddles”
journal, March 2016

  • Zhu, Qiang; Shtukenberg, Alexander G.; Carter, Damien J.
  • Journal of the American Chemical Society, Vol. 138, Issue 14
  • DOI: 10.1021/jacs.6b01120

Fingerprinting intermolecular interactions in molecular crystals
journal, January 2002

  • Spackman, Mark A.; McKinnon, Joshua J.
  • CrystEngComm, Vol. 4, Issue 66
  • DOI: 10.1039/B203191B

Static and lattice vibrational energy differences between polymorphs
journal, January 2015


Thermochemistry and Conformational Polymorphism of a Hexamorphic Crystal System
journal, February 2000

  • Yu, Lian; Stephenson, Gregory A.; Mitchell, Christine A.
  • Journal of the American Chemical Society, Vol. 122, Issue 4
  • DOI: 10.1021/ja9930622

Growth Actuated Bending and Twisting of Single Crystals
journal, January 2014

  • Shtukenberg, Alexander G.; Punin, Yurii O.; Gujral, Ankit
  • Angewandte Chemie International Edition, Vol. 53, Issue 3
  • DOI: 10.1002/anie.201301223

Ab initio determination of the crystalline benzene lattice energy to sub-kilojoule/mole accuracy
journal, August 2014


Ab initio molecular simulations with numeric atom-centered orbitals
journal, November 2009

  • Blum, Volker; Gehrke, Ralf; Hanke, Felix
  • Computer Physics Communications, Vol. 180, Issue 11
  • DOI: 10.1016/j.cpc.2009.06.022

Mueller matrix microscope with a dual continuous rotating compensator setup and digital demodulation
journal, January 2014

  • Arteaga, Oriol; Baldrís, Marta; Antó, Joan
  • Applied Optics, Vol. 53, Issue 10
  • DOI: 10.1364/AO.53.002236

Parametrization and Benchmark of DFTB3 for Organic Molecules
journal, November 2012

  • Gaus, Michael; Goez, Albrecht; Elstner, Marcus
  • Journal of Chemical Theory and Computation, Vol. 9, Issue 1
  • DOI: 10.1021/ct300849w

Evaluating the Roles of Conformational Strain and Cohesive Binding in Crystalline Polymorphs of Aripiprazole
journal, June 2013

  • Delaney, Sean P.; Pan, Duohai; Yin, Shawn X.
  • Crystal Growth & Design, Vol. 13, Issue 7
  • DOI: 10.1021/cg400358e

Report on the sixth blind test of organic crystal structure prediction methods
journal, August 2016

  • Reilly, Anthony M.; Cooper, Richard I.; Adjiman, Claire S.
  • Acta Crystallographica Section B Structural Science, Crystal Engineering and Materials, Vol. 72, Issue 4
  • DOI: 10.1107/S2052520616007447

Photopolarimetric measurement of the Mueller matrix by Fourier analysis of a single detected signal
journal, January 1978


The polymorphs of ROY: application of a systematic crystal structure prediction technique
journal, November 2012

  • Vasileiadis, Manolis; Kazantsev, Andrei V.; Karamertzanis, Panagiotis G.
  • Acta Crystallographica Section B Structural Science, Vol. 68, Issue 6
  • DOI: 10.1107/S0108768112045636

Cross-Nucleation between ROY Polymorphs
journal, December 2005

  • Chen, Shuang; Xi, Hanmi; Yu, Lian
  • Journal of the American Chemical Society, Vol. 127, Issue 49
  • DOI: 10.1021/ja056072d

New Polymorphs of ROY and New Record for Coexisting Polymorphs of Solved Structures
journal, July 2005

  • Chen, Shuang; Guzei, Ilia A.; Yu, Lian
  • Journal of the American Chemical Society, Vol. 127, Issue 27
  • DOI: 10.1021/ja052098t

Monte Carlo indexing with McMaille
journal, September 2004


Modeling Polymorphic Molecular Crystals with Electronic Structure Theory
journal, March 2016


Conformational and Color Polymorphism of 5-Methyl-2-[(2-nitrophenyl)amino]-3-thiophenecarbonitrile
journal, November 1995

  • Stephenson, G. A.; Borchardt, T. B.; Byrn, S. R.
  • Journal of Pharmaceutical Sciences, Vol. 84, Issue 11
  • DOI: 10.1002/jps.2600841122

Crystallization Force-A Density Functional Theory Concept for Revealing Intermolecular Interactions and Molecular Packing in Organic Crystals
journal, November 2008

  • Li, Tonglei; Ayers, Paul W.; Liu, Shubin
  • Chemistry - A European Journal, Vol. 15, Issue 2
  • DOI: 10.1002/chem.200801056

A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu
journal, April 2010

  • Grimme, Stefan; Antony, Jens; Ehrlich, Stephan
  • The Journal of Chemical Physics, Vol. 132, Issue 15
  • DOI: 10.1063/1.3382344

Dichroism in Helicoidal Crystals
journal, September 2016

  • Cui, Xiaoyan; Nichols, Shane M.; Arteaga, Oriol
  • Journal of the American Chemical Society, Vol. 138, Issue 37
  • DOI: 10.1021/jacs.6b06278

Bonded-atom fragments for describing molecular charge densities
journal, January 1977


Multichannel Mueller matrix ellipsometer based on the dual rotating compensator principle
journal, May 2004


Polymorphism in Molecular Solids: An Extraordinary System of Red, Orange, and Yellow Crystals
journal, September 2010


DDT Polymorphism and the Lethality of Crystal Forms
journal, June 2017


Electronic structure of AlFeN films exhibiting crystallographic orientation change from c- to a-axis with Fe concentrations and annealing effect
journal, February 2020


Computational exploration of copper catalyzed vinylogous aerobic oxidation of unsaturated compounds
journal, January 2021


Works referencing / citing this record:

Accuracy and reproducibility in crystal structure prediction: the curious case of ROY
journal, January 2019

  • Nyman, Jonas; Yu, Lian; Reutzel-Edens, Susan M.
  • CrystEngComm, Vol. 21, Issue 13
  • DOI: 10.1039/c8ce01902a

Experimental and computational approaches to rationalise multicomponent supramolecular assemblies: dapsone monosolvates
journal, January 2019

  • Braun, Doris E.
  • Physical Chemistry Chemical Physics, Vol. 21, Issue 31
  • DOI: 10.1039/c9cp02572c

Overcoming the difficulties of predicting conformational polymorph energetics in molecular crystals via correlated wavefunction methods
journal, January 2020

  • Greenwell, Chandler; McKinley, Jessica L.; Zhang, Peiyu
  • Chemical Science, Vol. 11, Issue 8
  • DOI: 10.1039/c9sc05689k

ROY confined in hydrogen-bonded frameworks: coercing conformation of a chromophore
journal, January 2020

  • Tang, Sishuang; Yusov, Anna; Li, Yuantao
  • Materials Chemistry Frontiers, Vol. 4, Issue 8
  • DOI: 10.1039/d0qm00200c

Figures/Tables have been extracted from DOE-funded journal article accepted manuscripts.