DistributedFBA.jl: High-level, high-performance flux balance analysis in Julia
Abstract
Flux balance analysis and its variants are widely used methods for predicting steady-state reaction rates in biochemical reaction networks. The exploration of high dimensional networks with such methods is currently hampered by software performance limitations. DistributedFBA.jl is a high-level, high-performance, open-source implementation of flux balance analysis in Julia. It is tailored to solve multiple flux balance analyses on a subset or all the reactions of large and huge-scale networks, on any number of threads or nodes. DistributedFBA.jl is a high-level, high-performance, open-source implementation of flux balance analysis in Julia. It is tailored to solve multiple flux balance analyses on a subset or all the reactions of large and huge-scale networks, on any number of threads or nodes.
- Authors:
-
- University of Luxembourg, Esch-sur-Alzette (Luxembourg). Luxembourg Centre for Systems Biomedicine
- Publication Date:
- Research Org.:
- University of Luxembourg, Esch-sur-Alzette (Luxembourg)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division; USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR)
- OSTI Identifier:
- 1424909
- Grant/Contract Number:
- SC0010429
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Bioinformatics
- Additional Journal Information:
- Journal Volume: 33; Journal Issue: 9; Journal ID: ISSN 1367-4803
- Publisher:
- Oxford University Press
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; 97 MATHEMATICS AND COMPUTING
Citation Formats
Heirendt, Laurent, Thiele, Ines, and Fleming, Ronan M. T. DistributedFBA.jl: High-level, high-performance flux balance analysis in Julia. United States: N. p., 2017.
Web. doi:10.1093/bioinformatics/btw838.
Heirendt, Laurent, Thiele, Ines, & Fleming, Ronan M. T. DistributedFBA.jl: High-level, high-performance flux balance analysis in Julia. United States. https://doi.org/10.1093/bioinformatics/btw838
Heirendt, Laurent, Thiele, Ines, and Fleming, Ronan M. T. Mon .
"DistributedFBA.jl: High-level, high-performance flux balance analysis in Julia". United States. https://doi.org/10.1093/bioinformatics/btw838. https://www.osti.gov/servlets/purl/1424909.
@article{osti_1424909,
title = {DistributedFBA.jl: High-level, high-performance flux balance analysis in Julia},
author = {Heirendt, Laurent and Thiele, Ines and Fleming, Ronan M. T.},
abstractNote = {Flux balance analysis and its variants are widely used methods for predicting steady-state reaction rates in biochemical reaction networks. The exploration of high dimensional networks with such methods is currently hampered by software performance limitations. DistributedFBA.jl is a high-level, high-performance, open-source implementation of flux balance analysis in Julia. It is tailored to solve multiple flux balance analyses on a subset or all the reactions of large and huge-scale networks, on any number of threads or nodes. DistributedFBA.jl is a high-level, high-performance, open-source implementation of flux balance analysis in Julia. It is tailored to solve multiple flux balance analyses on a subset or all the reactions of large and huge-scale networks, on any number of threads or nodes.},
doi = {10.1093/bioinformatics/btw838},
journal = {Bioinformatics},
number = 9,
volume = 33,
place = {United States},
year = {Mon Jan 16 00:00:00 EST 2017},
month = {Mon Jan 16 00:00:00 EST 2017}
}
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Works referencing / citing this record:
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